Ggra1397.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1397.t1
Unique NameGgra1397.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:114360..114929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog61853.ENSNLEP00000019168
Preferred nameBMS1
PFAMsAARP2CN,RIBIOP_C
Max annot lvl33208|Metazoa
KEGG koko:K14569
KEGG Pathwayko03008,map03008
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Evalue8.29e-16
EggNOG OGsCOG5192@1|root,KOG1951@2759|Eukaryota,38WKY@33154|Opisthokonta,3BB6A@33208|Metazoa,3CVNZ@33213|Bilateria,489R2@7711|Chordata,48VPE@7742|Vertebrata,3JBSF@40674|Mammalia,35I1P@314146|Euarchontoglires,4M7HC@9443|Primates
DescriptionRibosome biogenesis
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1397Ggra1397Gracilaria gracilis GNS1m malegenetig00000169_pilon 114360..114929 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1397.t1.start1Ggra1397.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 114360..114362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1397.t1.CDS1Ggra1397.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 114360..114929 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1397.t1.exon1Ggra1397.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 114360..114929 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1397.t1.stop1Ggra1397.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 114927..114929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1397.t1Ggra1397.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 114360..114929 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1397.t1 ID=Ggra1397.t1|Name=Ggra1397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MSETQKGEDSDDNELLDGDLEDLETGKEHVGKAPDLTKIDAEEGERSYME
SIKKKKIKKKQHFDMDWDTREIGDNDLDSKEPVNSTQEGHPHVKSRKALR
DASMRAPDPRKLERKKFEKLSVQEFGERDTESRIALEGIPPGQYMTMELQ
DVPVEFVNFFDPNFPIVLCGLKSSDDEGKTYIRARIRRH*
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spliced messenger RNA

>Ggra1397.t1 ID=Ggra1397.t1|Name=Ggra1397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000169_pilon:114360..114929+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAAACGCAAAAAGGAGAAGACAGTGATGATAATGAACTTCTTGA
TGGTGATCTCGAGGATCTTGAAACTGGTAAGGAGCATGTTGGAAAGGCTC
CTGATCTTACAAAGATTGATGCGGAGGAAGGCGAGAGAAGTTACATGGAG
AGCATAAAGAAAAAGAAAATCAAGAAGAAACAGCACTTTGATATGGATTG
GGACACAAGAGAAATAGGAGACAACGACCTAGATTCCAAAGAGCCAGTGA
ATTCGACGCAAGAAGGGCATCCACATGTAAAGTCTCGTAAAGCTCTACGG
GATGCATCGATGCGTGCTCCGGATCCAAGGAAGCTGGAAAGGAAGAAATT
TGAGAAGTTGAGTGTTCAAGAGTTTGGTGAACGTGACACAGAATCACGTA
TAGCGCTTGAAGGCATACCTCCTGGACAATATATGACAATGGAGCTCCAG
GATGTCCCAGTAGAGTTTGTGAATTTCTTCGATCCTAATTTCCCGATTGT
TCTTTGTGGGTTGAAGTCCTCTGATGACGAAGGGAAGACATATATAAGAG
CAAGAATCCGACGCCATTGA
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protein sequence of Ggra1397.t1

>Ggra1397.t1 ID=Ggra1397.t1|Name=Ggra1397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MSETQKGEDSDDNELLDGDLEDLETGKEHVGKAPDLTKIDAEEGERSYME
SIKKKKIKKKQHFDMDWDTREIGDNDLDSKEPVNSTQEGHPHVKSRKALR
DASMRAPDPRKLERKKFEKLSVQEFGERDTESRIALEGIPPGQYMTMELQ
DVPVEFVNFFDPNFPIVLCGLKSSDDEGKTYIRARIRRH*
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mRNA from alignment at tig00000169_pilon:114360..114929+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1397.t1 ID=Ggra1397.t1|Name=Ggra1397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000169_pilon:114360..114929+ (Gracilaria gracilis GNS1m male)
ATGTCAGAAACGCAAAAAGGAGAAGACAGTGATGATAATGAACTTCTTGA
TGGTGATCTCGAGGATCTTGAAACTGGTAAGGAGCATGTTGGAAAGGCTC
CTGATCTTACAAAGATTGATGCGGAGGAAGGCGAGAGAAGTTACATGGAG
AGCATAAAGAAAAAGAAAATCAAGAAGAAACAGCACTTTGATATGGATTG
GGACACAAGAGAAATAGGAGACAACGACCTAGATTCCAAAGAGCCAGTGA
ATTCGACGCAAGAAGGGCATCCACATGTAAAGTCTCGTAAAGCTCTACGG
GATGCATCGATGCGTGCTCCGGATCCAAGGAAGCTGGAAAGGAAGAAATT
TGAGAAGTTGAGTGTTCAAGAGTTTGGTGAACGTGACACAGAATCACGTA
TAGCGCTTGAAGGCATACCTCCTGGACAATATATGACAATGGAGCTCCAG
GATGTCCCAGTAGAGTTTGTGAATTTCTTCGATCCTAATTTCCCGATTGT
TCTTTGTGGGTTGAAGTCCTCTGATGACGAAGGGAAGACATATATAAGAG
CAAGAATCCGACGCCATTGA
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Coding sequence (CDS) from alignment at tig00000169_pilon:114360..114929+

>Ggra1397.t1 ID=Ggra1397.t1|Name=Ggra1397.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000169_pilon:114360..114929+ (Gracilaria gracilis GNS1m male)
ATGTCAGAAACGCAAAAAGGAGAAGACAGTGATGATAATGAACTTCTTGA
TGGTGATCTCGAGGATCTTGAAACTGGTAAGGAGCATGTTGGAAAGGCTC
CTGATCTTACAAAGATTGATGCGGAGGAAGGCGAGAGAAGTTACATGGAG
AGCATAAAGAAAAAGAAAATCAAGAAGAAACAGCACTTTGATATGGATTG
GGACACAAGAGAAATAGGAGACAACGACCTAGATTCCAAAGAGCCAGTGA
ATTCGACGCAAGAAGGGCATCCACATGTAAAGTCTCGTAAAGCTCTACGG
GATGCATCGATGCGTGCTCCGGATCCAAGGAAGCTGGAAAGGAAGAAATT
TGAGAAGTTGAGTGTTCAAGAGTTTGGTGAACGTGACACAGAATCACGTA
TAGCGCTTGAAGGCATACCTCCTGGACAATATATGACAATGGAGCTCCAG
GATGTCCCAGTAGAGTTTGTGAATTTCTTCGATCCTAATTTCCCGATTGT
TCTTTGTGGGTTGAAGTCCTCTGATGACGAAGGGAAGACATATATAAGAG
CAAGAATCCGACGCCATTGA
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