Ggra1394.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1394.t1
Unique NameGgra1394.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:516748..517561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10026805
PFAMsMoaE
Max annot lvl35493|Streptophyta
KEGG rclassRC02507
KEGG koko:K03635
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0019538,GO:0019637,GO:0019693,GO:0030366,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Evalue6.73e-44
EggNOG OGsCOG0314@1|root,KOG3307@2759|Eukaryota,37RDP@33090|Viridiplantae,3GD8E@35493|Streptophyta,4JI70@91835|fabids
EC2.8.1.12
DescriptionCatalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1394Ggra1394Gracilaria gracilis GNS1m malegenetig00000092_pilon 516748..517561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1394.t1Ggra1394.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 516748..517561 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1394.t1.start1Ggra1394.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 516748..516750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1394.t1.CDS1Ggra1394.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 516748..516945 +
Ggra1394.t1.CDS2Ggra1394.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 517138..517363 +
Ggra1394.t1.CDS3Ggra1394.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000092_pilon 517452..517561 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1394.t1.exon1Ggra1394.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 516748..516945 +
Ggra1394.t1.exon2Ggra1394.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 517138..517363 +
Ggra1394.t1.exon3Ggra1394.t1.exon3Gracilaria gracilis GNS1m maleexontig00000092_pilon 517452..517561 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1394.t1.intron1Ggra1394.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 516946..517137 +
Ggra1394.t1.intron2Ggra1394.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000092_pilon 517364..517451 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1394.t1.stop1Ggra1394.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 517559..517561 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1394.t1 ID=Ggra1394.t1|Name=Ggra1394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MTDVESISVTVIFFAKARELASQASIAIQLPSGTLPYAALNKTILPRFPQ
LEPIIPHLILAVNHTYNATTRDNFDGKTVLRLEYEAYNPMAIKEMKALCT
TARATWAQITAIAVMHRLGVVPVREASVIIAVSSPHRKDAIEACHSLIDE
LKARVPIWKKEIYENGSEWKENKEFKV*
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spliced messenger RNA

>Ggra1394.t1 ID=Ggra1394.t1|Name=Ggra1394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000092_pilon:516748..517561+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACGTCGAATCCATCTCCGTCACCGTCATCTTCTTCGCAAAGGC
GCGCGAATTGGCGTCTCAAGCGTCCATTGCGATCCAGCTTCCGTCCGGAA
CGCTGCCATACGCCGCGCTCAACAAGACGATTCTTCCCCGTTTCCCACAG
CTTGAGCCTATCATTCCGCACCTAATTCTCGCCGTCAACCACACGTACAA
CGCTACCACCAGGGATAATTTTGATGGAAAGACCGTATTGCGCTTGGAGT
ATGAAGCGTATAATCCCATGGCCATCAAGGAGATGAAAGCCTTGTGTACC
ACAGCACGAGCTACGTGGGCGCAGATCACCGCCATCGCTGTCATGCATCG
CTTGGGTGTAGTCCCAGTGCGCGAGGCCTCCGTCATCATTGCAGTTTCAT
CTCCGCATCGAAAGGATGCAATTGAGGCTTGTCACTCGCTTATTGACGAG
CTGAAAGCCCGTGTTCCGATATGGAAGAAAGAGATTTACGAGAACGGTTC
AGAATGGAAAGAGAACAAGGAATTCAAAGTATAA
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protein sequence of Ggra1394.t1

>Ggra1394.t1 ID=Ggra1394.t1|Name=Ggra1394.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MTDVESISVTVIFFAKARELASQASIAIQLPSGTLPYAALNKTILPRFPQ
LEPIIPHLILAVNHTYNATTRDNFDGKTVLRLEYEAYNPMAIKEMKALCT
TARATWAQITAIAVMHRLGVVPVREASVIIAVSSPHRKDAIEACHSLIDE
LKARVPIWKKEIYENGSEWKENKEFKV*
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mRNA from alignment at tig00000092_pilon:516748..517561+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1394.t1 ID=Ggra1394.t1|Name=Ggra1394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=814bp|location=Sequence derived from alignment at tig00000092_pilon:516748..517561+ (Gracilaria gracilis GNS1m male)
ATGACTGACGTCGAATCCATCTCCGTCACCGTCATCTTCTTCGCAAAGGC
GCGCGAATTGGCGTCTCAAGCGTCCATTGCGATCCAGCTTCCGTCCGGAA
CGCTGCCATACGCCGCGCTCAACAAGACGATTCTTCCCCGTTTCCCACAG
CTTGAGCCTATCATTCCGCACCTAATTCTCGCCGTCAACCACACGTACGT
CACCGATTCGTCAAAGCCGCTTCAAAACGGAGACGAACTCGCACTCATTC
CTCCGATAAGCGGTGGCTGATCGCAACATGGCTGAACAACAAGATACTGT
GCTGCTCACCGAGGAGCCACTCAGCGTGGAATCTGCCATGAGCTCAGTGT
CTCGAGATTGTGCAGGCGCTGTTTCTTTGTTTGTGGGTAGAACGCTACCA
CCAGGGATAATTTTGATGGAAAGACCGTATTGCGCTTGGAGTATGAAGCG
TATAATCCCATGGCCATCAAGGAGATGAAAGCCTTGTGTACCACAGCACG
AGCTACGTGGGCGCAGATCACCGCCATCGCTGTCATGCATCGCTTGGGTG
TAGTCCCAGTGCGCGAGGCCTCCGTCATCATTGCAGTTTCATCTCCGCAT
CGAAAGGATGCAATTGGTACGTGCTTATTAGCCAATTAGCTTTATATCAT
CCCCCATCAAAAATGCTTACCAGAAGCAATGTTTCGTTTTTGAATTACTT
GCAGAGGCTTGTCACTCGCTTATTGACGAGCTGAAAGCCCGTGTTCCGAT
ATGGAAGAAAGAGATTTACGAGAACGGTTCAGAATGGAAAGAGAACAAGG
AATTCAAAGTATAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:516748..517561+

>Ggra1394.t1 ID=Ggra1394.t1|Name=Ggra1394.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000092_pilon:516748..517561+ (Gracilaria gracilis GNS1m male)
ATGACTGACGTCGAATCCATCTCCGTCACCGTCATCTTCTTCGCAAAGGC
GCGCGAATTGGCGTCTCAAGCGTCCATTGCGATCCAGCTTCCGTCCGGAA
CGCTGCCATACGCCGCGCTCAACAAGACGATTCTTCCCCGTTTCCCACAG
CTTGAGCCTATCATTCCGCACCTAATTCTCGCCGTCAACCACACGTACAA
CGCTACCACCAGGGATAATTTTGATGGAAAGACCGTATTGCGCTTGGAGT
ATGAAGCGTATAATCCCATGGCCATCAAGGAGATGAAAGCCTTGTGTACC
ACAGCACGAGCTACGTGGGCGCAGATCACCGCCATCGCTGTCATGCATCG
CTTGGGTGTAGTCCCAGTGCGCGAGGCCTCCGTCATCATTGCAGTTTCAT
CTCCGCATCGAAAGGATGCAATTGAGGCTTGTCACTCGCTTATTGACGAG
CTGAAAGCCCGTGTTCCGATATGGAAGAAAGAGATTTACGAGAACGGTTC
AGAATGGAAAGAGAACAAGGAATTCAAAGTATAA
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