Ggra1393.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1393.t1
Unique Name	Ggra1393.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	674

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:514226..516247 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705789.1
PFAMs	EF-hand_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20045
Evalue	4.25e-29
EggNOG OGs	KOG0998@1\|root,KOG0998@2759\|Eukaryota
Description	endocytosis
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1393	Ggra1393	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 514226..516247 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1393.t1.stop1	Ggra1393.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 514226..514228 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1393.t1.CDS1	Ggra1393.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 514226..516247 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1393.t1.exon1	Ggra1393.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 514226..516247 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1393.t1.start1	Ggra1393.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 516245..516247 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1393.t1	Ggra1393.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 514226..516247 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:514226..516247-
coding sequence from alignment at tig00000092_pilon:514226..516247-

mRNA sequence

>Ggra1393.t1 ID=Ggra1393.t1|Name=Ggra1393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=674bp
MNYGGGPHGNGSFQNPNFGAFSQSTQMPYPGMPMFPMPSLHPMQPVQPSM
MPPVQNAYPPGQGPLADRPVTRGANGLYEAPEPEGPEQHPASQHMALNPG
EVSKYMEFWGQACDGADTVGGADAVAFLSRASKVSKGQLRKIWDIADHRK
EGKLEQNQFFIALRLIALAQRGAALSEAGLRNFRGIQLIPNIAPPPVKEQ
PVEQQPLSTAASHQQTNAFSWTVPKQIVHRYDSFFHQLDDRKHGMIDGKQ
GVTFFGKSGLPRSTLKVIWQLADVTRDGKLSLDEFRAAMHMVTNIRNKKL
SVEALPTALDPSGPNWFRIEGEQQPQMPMAPNPQQVSPIAPNPAHSHASP
TTQIPPIPQLSPTAHTVQRPGHRRQPSSSGARTPRRAAQRSAAISPQPHL
ASQHAIVPPPPQQAAIITPPPPQQPLVPPPPPAPQHNEAAQEQMREALRK
EREEVDRARREMEEMRAEMEKLRLEKEALAKKSSAHSTAHRASSHSRQPS
GSSIPLSSQHSGYGGSRKPAATQALPDLLSGSHTTAPVVRSPVKTPERSS
TGFKTSPAMHARNVAAVGQISPVKPLNTPDRNKPIDLGLDDDDIWDQPSP
KASALPGPAKLANKTGTIQSKDSVSSDDDDDDFWGAVGMGKKPTLGPPGG
GSSGAGGGTGKGFGGSELDDWAF*

spliced messenger RNA

>Ggra1393.t1 ID=Ggra1393.t1|Name=Ggra1393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2022bp|location=Sequence derived from alignment at tig00000092_pilon:514226..516247- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTACGGAGGTGGACCGCACGGAAATGGCTCCTTTCAGAACCCCAA
CTTCGGCGCCTTTTCCCAGTCCACTCAGATGCCCTACCCCGGCATGCCCA
TGTTCCCCATGCCCTCCTTGCATCCAATGCAACCTGTGCAGCCTTCAATG
ATGCCTCCAGTTCAAAACGCATATCCTCCAGGACAGGGTCCGCTCGCGGA
TCGCCCGGTAACGCGCGGTGCCAACGGTCTGTATGAAGCGCCTGAACCAG
AAGGTCCCGAACAACACCCAGCCAGTCAGCACATGGCTCTCAACCCTGGC
GAGGTTTCAAAGTACATGGAGTTCTGGGGACAGGCTTGTGATGGTGCTGA
TACTGTTGGTGGCGCTGATGCGGTCGCGTTTCTTTCCAGGGCTTCCAAGG
TTTCAAAGGGACAGTTGAGAAAGATTTGGGATATTGCAGATCATCGAAAA
GAAGGAAAACTCGAACAGAATCAATTCTTCATTGCACTGCGATTGATTGC
ACTGGCTCAAAGAGGCGCCGCGCTTTCCGAAGCTGGGCTCAGAAATTTCC
GTGGAATCCAACTCATCCCAAACATTGCTCCTCCTCCCGTCAAGGAACAG
CCCGTTGAACAGCAGCCTTTGTCTACAGCTGCTTCGCACCAACAAACCAA
CGCCTTCTCATGGACGGTGCCCAAGCAAATAGTTCACCGATACGATTCGT
TCTTTCATCAGTTGGATGATCGCAAGCATGGAATGATTGATGGTAAACAG
GGGGTCACTTTTTTCGGAAAGAGTGGTCTTCCTCGGTCGACTTTGAAGGT
AATATGGCAGCTTGCAGATGTCACCAGGGACGGAAAGCTCTCGCTTGATG
AGTTCCGCGCAGCGATGCATATGGTCACTAACATTCGTAACAAGAAGTTG
TCTGTGGAGGCGTTGCCCACCGCTTTGGACCCATCAGGACCAAACTGGTT
CAGAATTGAAGGAGAACAACAGCCGCAAATGCCAATGGCGCCAAACCCAC
AACAGGTATCCCCGATAGCTCCCAATCCTGCGCATTCTCACGCATCGCCC
ACAACGCAAATTCCTCCCATACCACAGCTATCACCAACGGCTCATACTGT
GCAAAGACCTGGTCATAGAAGACAACCATCATCTTCTGGAGCACGCACCC
CCAGAAGAGCAGCACAGCGATCAGCAGCAATTTCTCCTCAACCTCATTTA
GCGTCCCAACATGCGATAGTACCGCCACCTCCGCAACAAGCAGCAATCAT
AACTCCCCCTCCGCCGCAACAGCCCCTTGTTCCACCACCGCCACCTGCTC
CGCAGCATAATGAAGCTGCGCAAGAGCAGATGCGCGAAGCCCTTCGAAAA
GAGCGAGAAGAAGTAGATCGTGCGAGGCGCGAAATGGAAGAAATGAGGGC
AGAAATGGAGAAGCTGCGCCTCGAGAAGGAAGCGTTAGCGAAGAAGTCCT
CGGCACATAGCACGGCACATCGCGCATCTTCTCATTCGAGACAGCCATCA
GGCTCTTCCATACCACTCTCATCCCAACATTCTGGATACGGAGGAAGCCG
GAAACCAGCGGCGACGCAAGCCCTCCCTGATTTGCTGAGTGGTTCTCATA
CTACCGCTCCGGTTGTGCGTTCGCCAGTCAAAACACCGGAGAGGTCATCG
ACCGGCTTTAAGACCTCCCCCGCCATGCATGCTAGAAACGTGGCTGCCGT
TGGTCAAATATCACCCGTGAAGCCATTGAATACCCCAGATCGCAACAAGC
CGATAGATCTTGGACTAGACGATGATGATATTTGGGATCAACCGTCGCCA
AAAGCTAGTGCCCTTCCTGGCCCTGCGAAACTAGCAAACAAGACCGGTAC
GATTCAGTCAAAGGACAGCGTGTCATCTGATGATGATGACGATGACTTTT
GGGGTGCTGTGGGAATGGGTAAGAAGCCCACACTTGGTCCGCCAGGAGGC
GGTAGCTCTGGAGCAGGCGGAGGCACAGGAAAAGGTTTTGGTGGATCGGA
GCTTGATGATTGGGCTTTCTAA

protein sequence of Ggra1393.t1

>Ggra1393.t1 ID=Ggra1393.t1|Name=Ggra1393.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=674bp
MNYGGGPHGNGSFQNPNFGAFSQSTQMPYPGMPMFPMPSLHPMQPVQPSM
MPPVQNAYPPGQGPLADRPVTRGANGLYEAPEPEGPEQHPASQHMALNPG
EVSKYMEFWGQACDGADTVGGADAVAFLSRASKVSKGQLRKIWDIADHRK
EGKLEQNQFFIALRLIALAQRGAALSEAGLRNFRGIQLIPNIAPPPVKEQ
PVEQQPLSTAASHQQTNAFSWTVPKQIVHRYDSFFHQLDDRKHGMIDGKQ
GVTFFGKSGLPRSTLKVIWQLADVTRDGKLSLDEFRAAMHMVTNIRNKKL
SVEALPTALDPSGPNWFRIEGEQQPQMPMAPNPQQVSPIAPNPAHSHASP
TTQIPPIPQLSPTAHTVQRPGHRRQPSSSGARTPRRAAQRSAAISPQPHL
ASQHAIVPPPPQQAAIITPPPPQQPLVPPPPPAPQHNEAAQEQMREALRK
EREEVDRARREMEEMRAEMEKLRLEKEALAKKSSAHSTAHRASSHSRQPS
GSSIPLSSQHSGYGGSRKPAATQALPDLLSGSHTTAPVVRSPVKTPERSS
TGFKTSPAMHARNVAAVGQISPVKPLNTPDRNKPIDLGLDDDDIWDQPSP
KASALPGPAKLANKTGTIQSKDSVSSDDDDDDFWGAVGMGKKPTLGPPGG
GSSGAGGGTGKGFGGSELDDWAF*

mRNA from alignment at tig00000092_pilon:514226..516247-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1393.t1 ID=Ggra1393.t1|Name=Ggra1393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2022bp|location=Sequence derived from alignment at tig00000092_pilon:514226..516247- (Gracilaria gracilis GNS1m male)
ATGAATTACGGAGGTGGACCGCACGGAAATGGCTCCTTTCAGAACCCCAA
CTTCGGCGCCTTTTCCCAGTCCACTCAGATGCCCTACCCCGGCATGCCCA
TGTTCCCCATGCCCTCCTTGCATCCAATGCAACCTGTGCAGCCTTCAATG
ATGCCTCCAGTTCAAAACGCATATCCTCCAGGACAGGGTCCGCTCGCGGA
TCGCCCGGTAACGCGCGGTGCCAACGGTCTGTATGAAGCGCCTGAACCAG
AAGGTCCCGAACAACACCCAGCCAGTCAGCACATGGCTCTCAACCCTGGC
GAGGTTTCAAAGTACATGGAGTTCTGGGGACAGGCTTGTGATGGTGCTGA
TACTGTTGGTGGCGCTGATGCGGTCGCGTTTCTTTCCAGGGCTTCCAAGG
TTTCAAAGGGACAGTTGAGAAAGATTTGGGATATTGCAGATCATCGAAAA
GAAGGAAAACTCGAACAGAATCAATTCTTCATTGCACTGCGATTGATTGC
ACTGGCTCAAAGAGGCGCCGCGCTTTCCGAAGCTGGGCTCAGAAATTTCC
GTGGAATCCAACTCATCCCAAACATTGCTCCTCCTCCCGTCAAGGAACAG
CCCGTTGAACAGCAGCCTTTGTCTACAGCTGCTTCGCACCAACAAACCAA
CGCCTTCTCATGGACGGTGCCCAAGCAAATAGTTCACCGATACGATTCGT
TCTTTCATCAGTTGGATGATCGCAAGCATGGAATGATTGATGGTAAACAG
GGGGTCACTTTTTTCGGAAAGAGTGGTCTTCCTCGGTCGACTTTGAAGGT
AATATGGCAGCTTGCAGATGTCACCAGGGACGGAAAGCTCTCGCTTGATG
AGTTCCGCGCAGCGATGCATATGGTCACTAACATTCGTAACAAGAAGTTG
TCTGTGGAGGCGTTGCCCACCGCTTTGGACCCATCAGGACCAAACTGGTT
CAGAATTGAAGGAGAACAACAGCCGCAAATGCCAATGGCGCCAAACCCAC
AACAGGTATCCCCGATAGCTCCCAATCCTGCGCATTCTCACGCATCGCCC
ACAACGCAAATTCCTCCCATACCACAGCTATCACCAACGGCTCATACTGT
GCAAAGACCTGGTCATAGAAGACAACCATCATCTTCTGGAGCACGCACCC
CCAGAAGAGCAGCACAGCGATCAGCAGCAATTTCTCCTCAACCTCATTTA
GCGTCCCAACATGCGATAGTACCGCCACCTCCGCAACAAGCAGCAATCAT
AACTCCCCCTCCGCCGCAACAGCCCCTTGTTCCACCACCGCCACCTGCTC
CGCAGCATAATGAAGCTGCGCAAGAGCAGATGCGCGAAGCCCTTCGAAAA
GAGCGAGAAGAAGTAGATCGTGCGAGGCGCGAAATGGAAGAAATGAGGGC
AGAAATGGAGAAGCTGCGCCTCGAGAAGGAAGCGTTAGCGAAGAAGTCCT
CGGCACATAGCACGGCACATCGCGCATCTTCTCATTCGAGACAGCCATCA
GGCTCTTCCATACCACTCTCATCCCAACATTCTGGATACGGAGGAAGCCG
GAAACCAGCGGCGACGCAAGCCCTCCCTGATTTGCTGAGTGGTTCTCATA
CTACCGCTCCGGTTGTGCGTTCGCCAGTCAAAACACCGGAGAGGTCATCG
ACCGGCTTTAAGACCTCCCCCGCCATGCATGCTAGAAACGTGGCTGCCGT
TGGTCAAATATCACCCGTGAAGCCATTGAATACCCCAGATCGCAACAAGC
CGATAGATCTTGGACTAGACGATGATGATATTTGGGATCAACCGTCGCCA
AAAGCTAGTGCCCTTCCTGGCCCTGCGAAACTAGCAAACAAGACCGGTAC
GATTCAGTCAAAGGACAGCGTGTCATCTGATGATGATGACGATGACTTTT
GGGGTGCTGTGGGAATGGGTAAGAAGCCCACACTTGGTCCGCCAGGAGGC
GGTAGCTCTGGAGCAGGCGGAGGCACAGGAAAAGGTTTTGGTGGATCGGA
GCTTGATGATTGGGCTTTCTAA

Coding sequence (CDS) from alignment at tig00000092_pilon:514226..516247-

>Ggra1393.t1 ID=Ggra1393.t1|Name=Ggra1393.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2022bp|location=Sequence derived from alignment at tig00000092_pilon:514226..516247- (Gracilaria gracilis GNS1m male)
ATGAATTACGGAGGTGGACCGCACGGAAATGGCTCCTTTCAGAACCCCAA
CTTCGGCGCCTTTTCCCAGTCCACTCAGATGCCCTACCCCGGCATGCCCA
TGTTCCCCATGCCCTCCTTGCATCCAATGCAACCTGTGCAGCCTTCAATG
ATGCCTCCAGTTCAAAACGCATATCCTCCAGGACAGGGTCCGCTCGCGGA
TCGCCCGGTAACGCGCGGTGCCAACGGTCTGTATGAAGCGCCTGAACCAG
AAGGTCCCGAACAACACCCAGCCAGTCAGCACATGGCTCTCAACCCTGGC
GAGGTTTCAAAGTACATGGAGTTCTGGGGACAGGCTTGTGATGGTGCTGA
TACTGTTGGTGGCGCTGATGCGGTCGCGTTTCTTTCCAGGGCTTCCAAGG
TTTCAAAGGGACAGTTGAGAAAGATTTGGGATATTGCAGATCATCGAAAA
GAAGGAAAACTCGAACAGAATCAATTCTTCATTGCACTGCGATTGATTGC
ACTGGCTCAAAGAGGCGCCGCGCTTTCCGAAGCTGGGCTCAGAAATTTCC
GTGGAATCCAACTCATCCCAAACATTGCTCCTCCTCCCGTCAAGGAACAG
CCCGTTGAACAGCAGCCTTTGTCTACAGCTGCTTCGCACCAACAAACCAA
CGCCTTCTCATGGACGGTGCCCAAGCAAATAGTTCACCGATACGATTCGT
TCTTTCATCAGTTGGATGATCGCAAGCATGGAATGATTGATGGTAAACAG
GGGGTCACTTTTTTCGGAAAGAGTGGTCTTCCTCGGTCGACTTTGAAGGT
AATATGGCAGCTTGCAGATGTCACCAGGGACGGAAAGCTCTCGCTTGATG
AGTTCCGCGCAGCGATGCATATGGTCACTAACATTCGTAACAAGAAGTTG
TCTGTGGAGGCGTTGCCCACCGCTTTGGACCCATCAGGACCAAACTGGTT
CAGAATTGAAGGAGAACAACAGCCGCAAATGCCAATGGCGCCAAACCCAC
AACAGGTATCCCCGATAGCTCCCAATCCTGCGCATTCTCACGCATCGCCC
ACAACGCAAATTCCTCCCATACCACAGCTATCACCAACGGCTCATACTGT
GCAAAGACCTGGTCATAGAAGACAACCATCATCTTCTGGAGCACGCACCC
CCAGAAGAGCAGCACAGCGATCAGCAGCAATTTCTCCTCAACCTCATTTA
GCGTCCCAACATGCGATAGTACCGCCACCTCCGCAACAAGCAGCAATCAT
AACTCCCCCTCCGCCGCAACAGCCCCTTGTTCCACCACCGCCACCTGCTC
CGCAGCATAATGAAGCTGCGCAAGAGCAGATGCGCGAAGCCCTTCGAAAA
GAGCGAGAAGAAGTAGATCGTGCGAGGCGCGAAATGGAAGAAATGAGGGC
AGAAATGGAGAAGCTGCGCCTCGAGAAGGAAGCGTTAGCGAAGAAGTCCT
CGGCACATAGCACGGCACATCGCGCATCTTCTCATTCGAGACAGCCATCA
GGCTCTTCCATACCACTCTCATCCCAACATTCTGGATACGGAGGAAGCCG
GAAACCAGCGGCGACGCAAGCCCTCCCTGATTTGCTGAGTGGTTCTCATA
CTACCGCTCCGGTTGTGCGTTCGCCAGTCAAAACACCGGAGAGGTCATCG
ACCGGCTTTAAGACCTCCCCCGCCATGCATGCTAGAAACGTGGCTGCCGT
TGGTCAAATATCACCCGTGAAGCCATTGAATACCCCAGATCGCAACAAGC
CGATAGATCTTGGACTAGACGATGATGATATTTGGGATCAACCGTCGCCA
AAAGCTAGTGCCCTTCCTGGCCCTGCGAAACTAGCAAACAAGACCGGTAC
GATTCAGTCAAAGGACAGCGTGTCATCTGATGATGATGACGATGACTTTT
GGGGTGCTGTGGGAATGGGTAAGAAGCCCACACTTGGTCCGCCAGGAGGC
GGTAGCTCTGGAGCAGGCGGAGGCACAGGAAAAGGTTTTGGTGGATCGGA
GCTTGATGATTGGGCTTTCTAA