Ggra1392.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1392.t1
Unique Name	Ggra1392.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:508740..509876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_002733472.1
Preferred name	SLC35G1
PFAMs	EamA
Max annot lvl	33208\|Metazoa
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0019725,GO:0030001,GO:0030003,GO:0031984,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051480,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070838,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0098771,GO:0098827,GO:1901660,GO:1990034
Evalue	3.86e-20
EggNOG OGs	COG0697@1\|root,KOG4510@2759\|Eukaryota,395GA@33154\|Opisthokonta,3BEDN@33208\|Metazoa,3D174@33213\|Bilateria
Description	calcium ion export across plasma membrane
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1392	Ggra1392	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 508740..509876 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1392.t1.start1	Ggra1392.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 508740..508742 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1392.t1.CDS1	Ggra1392.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 508740..509876 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1392.t1.exon1	Ggra1392.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 508740..509876 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1392.t1.stop1	Ggra1392.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 509874..509876 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1392.t1	Ggra1392.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 508740..509876 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:508740..509876+
coding sequence from alignment at tig00000092_pilon:508740..509876+

mRNA sequence

>Ggra1392.t1 ID=Ggra1392.t1|Name=Ggra1392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MTSQLRCSPGDGIEASHGRSVRRRSLWTTLQTAFVTHPELYGYCVMCFSA
LAHATLSFFVRLGATRYSFPVLATLLIRSIMEGAMSFSYVFTFVDYRRSV
QCISRWRWFLIFLRGMFGTMSIACQITALGLISMGNSVTILFTCPAITMA
MAALIIHEPVRTVDIISLIMSFAGVLFVAQPSFLSPHQHSPITHHTLVGI
VVALTAAFFSSTVSVITRFLGHDVHFMINVCSLSICTFLVAITLSGADEF
RSITSNHAGLLINIIAGICGGLAQSTMSKSLQYCRAGPALLVRSLTIPFS
YSYGLVFLGESPSLLTLFGVLMILTAAASLGLSQVFAAKPPDETTPLTQH
CHHQSLRLKLNDPISGAIDVDPQSSNDT*

spliced messenger RNA

>Ggra1392.t1 ID=Ggra1392.t1|Name=Ggra1392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000092_pilon:508740..509876+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGCAGCTAAGGTGCTCGCCTGGAGATGGCATCGAGGCTTCGCA
TGGGCGCTCGGTGCGGCGCCGTTCGCTTTGGACGACGCTTCAGACGGCTT
TCGTGACGCATCCCGAGCTCTATGGCTACTGCGTCATGTGCTTTTCGGCG
CTGGCGCATGCGACGCTTTCCTTCTTCGTGCGCTTGGGCGCCACGCGCTA
TTCCTTCCCGGTGTTGGCTACGCTGTTGATTCGCTCCATCATGGAGGGCG
CCATGTCGTTTAGCTACGTGTTTACGTTTGTTGATTATCGGCGCTCCGTG
CAGTGTATCAGTCGCTGGCGCTGGTTTCTTATCTTTCTCAGAGGCATGTT
TGGTACCATGAGTATTGCCTGTCAGATTACAGCCTTGGGGCTTATTTCCA
TGGGCAATTCTGTCACCATCTTGTTCACCTGTCCCGCTATTACCATGGCC
ATGGCTGCGTTGATAATACATGAACCTGTTCGTACTGTTGATATCATTTC
ACTCATCATGTCCTTTGCGGGCGTATTGTTCGTTGCGCAGCCCTCTTTCT
TATCGCCACATCAGCATTCACCCATCACTCACCACACTCTTGTGGGTATT
GTCGTTGCGCTCACTGCTGCGTTTTTCTCATCCACAGTCAGTGTCATCAC
TCGCTTTCTGGGGCACGACGTCCACTTCATGATCAACGTCTGCTCTCTTT
CCATTTGCACGTTTCTTGTGGCCATCACCCTCTCAGGCGCAGACGAATTT
CGTAGCATAACTTCCAATCACGCAGGTTTGCTAATAAACATTATCGCTGG
AATCTGTGGAGGTCTCGCTCAGTCAACCATGAGCAAAAGCCTGCAGTACT
GTCGCGCGGGGCCTGCCTTATTGGTACGAAGTTTGACCATACCTTTTTCG
TATTCGTACGGACTTGTGTTCCTTGGCGAAAGTCCTTCGCTTCTTACGCT
GTTTGGAGTGCTCATGATTCTTACTGCCGCTGCTTCGCTGGGACTTTCCC
AGGTGTTTGCGGCCAAACCGCCTGATGAGACAACGCCGTTGACACAGCAC
TGTCATCACCAATCGCTTCGTCTCAAGCTGAATGATCCGATATCAGGGGC
AATTGATGTCGATCCGCAGAGTAGCAATGACACTTAA

protein sequence of Ggra1392.t1

>Ggra1392.t1 ID=Ggra1392.t1|Name=Ggra1392.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MTSQLRCSPGDGIEASHGRSVRRRSLWTTLQTAFVTHPELYGYCVMCFSA
LAHATLSFFVRLGATRYSFPVLATLLIRSIMEGAMSFSYVFTFVDYRRSV
QCISRWRWFLIFLRGMFGTMSIACQITALGLISMGNSVTILFTCPAITMA
MAALIIHEPVRTVDIISLIMSFAGVLFVAQPSFLSPHQHSPITHHTLVGI
VVALTAAFFSSTVSVITRFLGHDVHFMINVCSLSICTFLVAITLSGADEF
RSITSNHAGLLINIIAGICGGLAQSTMSKSLQYCRAGPALLVRSLTIPFS
YSYGLVFLGESPSLLTLFGVLMILTAAASLGLSQVFAAKPPDETTPLTQH
CHHQSLRLKLNDPISGAIDVDPQSSNDT*

mRNA from alignment at tig00000092_pilon:508740..509876+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1392.t1 ID=Ggra1392.t1|Name=Ggra1392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000092_pilon:508740..509876+ (Gracilaria gracilis GNS1m male)
ATGACGTCGCAGCTAAGGTGCTCGCCTGGAGATGGCATCGAGGCTTCGCA
TGGGCGCTCGGTGCGGCGCCGTTCGCTTTGGACGACGCTTCAGACGGCTT
TCGTGACGCATCCCGAGCTCTATGGCTACTGCGTCATGTGCTTTTCGGCG
CTGGCGCATGCGACGCTTTCCTTCTTCGTGCGCTTGGGCGCCACGCGCTA
TTCCTTCCCGGTGTTGGCTACGCTGTTGATTCGCTCCATCATGGAGGGCG
CCATGTCGTTTAGCTACGTGTTTACGTTTGTTGATTATCGGCGCTCCGTG
CAGTGTATCAGTCGCTGGCGCTGGTTTCTTATCTTTCTCAGAGGCATGTT
TGGTACCATGAGTATTGCCTGTCAGATTACAGCCTTGGGGCTTATTTCCA
TGGGCAATTCTGTCACCATCTTGTTCACCTGTCCCGCTATTACCATGGCC
ATGGCTGCGTTGATAATACATGAACCTGTTCGTACTGTTGATATCATTTC
ACTCATCATGTCCTTTGCGGGCGTATTGTTCGTTGCGCAGCCCTCTTTCT
TATCGCCACATCAGCATTCACCCATCACTCACCACACTCTTGTGGGTATT
GTCGTTGCGCTCACTGCTGCGTTTTTCTCATCCACAGTCAGTGTCATCAC
TCGCTTTCTGGGGCACGACGTCCACTTCATGATCAACGTCTGCTCTCTTT
CCATTTGCACGTTTCTTGTGGCCATCACCCTCTCAGGCGCAGACGAATTT
CGTAGCATAACTTCCAATCACGCAGGTTTGCTAATAAACATTATCGCTGG
AATCTGTGGAGGTCTCGCTCAGTCAACCATGAGCAAAAGCCTGCAGTACT
GTCGCGCGGGGCCTGCCTTATTGGTACGAAGTTTGACCATACCTTTTTCG
TATTCGTACGGACTTGTGTTCCTTGGCGAAAGTCCTTCGCTTCTTACGCT
GTTTGGAGTGCTCATGATTCTTACTGCCGCTGCTTCGCTGGGACTTTCCC
AGGTGTTTGCGGCCAAACCGCCTGATGAGACAACGCCGTTGACACAGCAC
TGTCATCACCAATCGCTTCGTCTCAAGCTGAATGATCCGATATCAGGGGC
AATTGATGTCGATCCGCAGAGTAGCAATGACACTTAA

Coding sequence (CDS) from alignment at tig00000092_pilon:508740..509876+

>Ggra1392.t1 ID=Ggra1392.t1|Name=Ggra1392.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000092_pilon:508740..509876+ (Gracilaria gracilis GNS1m male)
ATGACGTCGCAGCTAAGGTGCTCGCCTGGAGATGGCATCGAGGCTTCGCA
TGGGCGCTCGGTGCGGCGCCGTTCGCTTTGGACGACGCTTCAGACGGCTT
TCGTGACGCATCCCGAGCTCTATGGCTACTGCGTCATGTGCTTTTCGGCG
CTGGCGCATGCGACGCTTTCCTTCTTCGTGCGCTTGGGCGCCACGCGCTA
TTCCTTCCCGGTGTTGGCTACGCTGTTGATTCGCTCCATCATGGAGGGCG
CCATGTCGTTTAGCTACGTGTTTACGTTTGTTGATTATCGGCGCTCCGTG
CAGTGTATCAGTCGCTGGCGCTGGTTTCTTATCTTTCTCAGAGGCATGTT
TGGTACCATGAGTATTGCCTGTCAGATTACAGCCTTGGGGCTTATTTCCA
TGGGCAATTCTGTCACCATCTTGTTCACCTGTCCCGCTATTACCATGGCC
ATGGCTGCGTTGATAATACATGAACCTGTTCGTACTGTTGATATCATTTC
ACTCATCATGTCCTTTGCGGGCGTATTGTTCGTTGCGCAGCCCTCTTTCT
TATCGCCACATCAGCATTCACCCATCACTCACCACACTCTTGTGGGTATT
GTCGTTGCGCTCACTGCTGCGTTTTTCTCATCCACAGTCAGTGTCATCAC
TCGCTTTCTGGGGCACGACGTCCACTTCATGATCAACGTCTGCTCTCTTT
CCATTTGCACGTTTCTTGTGGCCATCACCCTCTCAGGCGCAGACGAATTT
CGTAGCATAACTTCCAATCACGCAGGTTTGCTAATAAACATTATCGCTGG
AATCTGTGGAGGTCTCGCTCAGTCAACCATGAGCAAAAGCCTGCAGTACT
GTCGCGCGGGGCCTGCCTTATTGGTACGAAGTTTGACCATACCTTTTTCG
TATTCGTACGGACTTGTGTTCCTTGGCGAAAGTCCTTCGCTTCTTACGCT
GTTTGGAGTGCTCATGATTCTTACTGCCGCTGCTTCGCTGGGACTTTCCC
AGGTGTTTGCGGCCAAACCGCCTGATGAGACAACGCCGTTGACACAGCAC
TGTCATCACCAATCGCTTCGTCTCAAGCTGAATGATCCGATATCAGGGGC
AATTGATGTCGATCCGCAGAGTAGCAATGACACTTAA