Ggra1391.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1391.t1
Unique NameGgra1391.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:507201..508489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53345
PFAMsPseudoU_synth_2
Max annot lvl2759|Eukaryota
Evalue1.64e-59
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Descriptionpseudouridine synthase activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1391Ggra1391Gracilaria gracilis GNS1m malegenetig00000092_pilon 507201..508489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1391.t1Ggra1391.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 507201..508489 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1391.t1.stop1Ggra1391.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 507201..507203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1391.t1.CDS1Ggra1391.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 507201..507423 -
Ggra1391.t1.CDS2Ggra1391.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 507514..507872 -
Ggra1391.t1.CDS3Ggra1391.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000092_pilon 507951..507965 -
Ggra1391.t1.CDS4Ggra1391.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000092_pilon 508055..508489 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1391.t1.exon1Ggra1391.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 507201..507423 -
Ggra1391.t1.exon2Ggra1391.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 507514..507872 -
Ggra1391.t1.exon3Ggra1391.t1.exon3Gracilaria gracilis GNS1m maleexontig00000092_pilon 507951..507965 -
Ggra1391.t1.exon4Ggra1391.t1.exon4Gracilaria gracilis GNS1m maleexontig00000092_pilon 508055..508489 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1391.t1.intron1Ggra1391.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 507424..507513 -
Ggra1391.t1.intron2Ggra1391.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000092_pilon 507873..507950 -
Ggra1391.t1.intron3Ggra1391.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000092_pilon 507966..508054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1391.t1.start1Ggra1391.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 508487..508489 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1391.t1 ID=Ggra1391.t1|Name=Ggra1391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MKPMCLMHRLSLLPTFIPTALPPRLRVRAQRTASTCTTSPSPSSSSRSLR
DEIEQATRERRRFRIDKSALTEAEKRELRLRSKAIPLVADHEPLDVVFED
DTFLALNKPSYLKMHPSHRFEGGSLLNRAIGYLGYPPRLLHRLDMHTTGI
VIMAKKKEVCHPIMRQFQRGSVQKQYLCVVDGHLPEPPNASFTVEAPIQR
SHRSYVREIGHSNPDSKPSKTVYTVLDKSQSKQLMLLQATPHTGRTHQIR
VHAASKSLPIIGDDLYNPKEHAMYADYDEINAAARDATLTKYGDDNPLRK
GLKLHAWSISLVNPLTNERVSFTAPPPSHMNNLIEWSDMSLPS*
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spliced messenger RNA

>Ggra1391.t1 ID=Ggra1391.t1|Name=Ggra1391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000092_pilon:507201..508489- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCATGTGTCTGATGCATCGCCTCTCACTGCTCCCCACCTTCAT
CCCCACCGCGCTCCCTCCGCGACTGCGCGTGCGCGCGCAACGCACCGCAT
CAACATGCACCACATCGCCGTCGCCGTCGTCGTCATCGCGTTCGCTGCGT
GACGAGATAGAGCAAGCCACACGCGAACGGCGTCGCTTCCGCATCGACAA
GAGCGCGTTGACGGAGGCCGAGAAGCGTGAGTTGAGGCTTCGTTCGAAGG
CCATCCCGCTCGTGGCGGACCATGAGCCCTTGGACGTTGTTTTCGAAGAC
GACACCTTTTTGGCGCTCAACAAGCCGTCCTACTTGAAGATGCATCCTAG
CCATCGCTTTGAAGGCGGTTCTCTGCTGAATCGCGCCATTGGTTACCTGG
GCTATCCGCCCCGCCTGTTGCATCGATTGGATATGCATACTACTGGCATT
GTAATTATGGCCAAGAAGAAGGAAGTATGTCATCCAATCATGCGCCAGTT
CCAGCGCGGCAGCGTACAAAAGCAATATCTCTGCGTCGTTGACGGCCACC
TCCCCGAACCACCGAACGCCTCCTTCACAGTAGAAGCGCCAATCCAACGC
TCTCACCGATCTTACGTGCGCGAAATCGGCCACTCTAATCCCGACTCAAA
GCCCTCCAAAACAGTATACACCGTTCTTGACAAGTCGCAATCGAAGCAGC
TCATGTTACTTCAAGCCACTCCGCATACCGGCCGAACCCACCAGATCCGC
GTGCATGCCGCTAGCAAGTCGTTACCCATCATTGGCGATGATTTATACAA
CCCGAAAGAACATGCCATGTATGCAGATTATGACGAAATCAACGCTGCGG
CACGTGATGCGACACTCACCAAGTATGGTGATGATAATCCTCTTCGAAAA
GGCCTCAAGTTGCATGCGTGGAGTATTTCTCTTGTCAATCCATTGACCAA
CGAGCGCGTTTCGTTTACCGCACCGCCGCCATCGCATATGAACAACCTCA
TCGAATGGAGTGACATGAGCCTACCGAGCTAA
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protein sequence of Ggra1391.t1

>Ggra1391.t1 ID=Ggra1391.t1|Name=Ggra1391.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MKPMCLMHRLSLLPTFIPTALPPRLRVRAQRTASTCTTSPSPSSSSRSLR
DEIEQATRERRRFRIDKSALTEAEKRELRLRSKAIPLVADHEPLDVVFED
DTFLALNKPSYLKMHPSHRFEGGSLLNRAIGYLGYPPRLLHRLDMHTTGI
VIMAKKKEVCHPIMRQFQRGSVQKQYLCVVDGHLPEPPNASFTVEAPIQR
SHRSYVREIGHSNPDSKPSKTVYTVLDKSQSKQLMLLQATPHTGRTHQIR
VHAASKSLPIIGDDLYNPKEHAMYADYDEINAAARDATLTKYGDDNPLRK
GLKLHAWSISLVNPLTNERVSFTAPPPSHMNNLIEWSDMSLPS*
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mRNA from alignment at tig00000092_pilon:507201..508489-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1391.t1 ID=Ggra1391.t1|Name=Ggra1391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1289bp|location=Sequence derived from alignment at tig00000092_pilon:507201..508489- (Gracilaria gracilis GNS1m male)
ATGAAGCCCATGTGTCTGATGCATCGCCTCTCACTGCTCCCCACCTTCAT
CCCCACCGCGCTCCCTCCGCGACTGCGCGTGCGCGCGCAACGCACCGCAT
CAACATGCACCACATCGCCGTCGCCGTCGTCGTCATCGCGTTCGCTGCGT
GACGAGATAGAGCAAGCCACACGCGAACGGCGTCGCTTCCGCATCGACAA
GAGCGCGTTGACGGAGGCCGAGAAGCGTGAGTTGAGGCTTCGTTCGAAGG
CCATCCCGCTCGTGGCGGACCATGAGCCCTTGGACGTTGTTTTCGAAGAC
GACACCTTTTTGGCGCTCAACAAGCCGTCCTACTTGAAGATGCATCCTAG
CCATCGCTTTGAAGGCGGTTCTCTGCTGAATCGCGCCATTGGTTACCTGG
GCTATCCGCCCCGCCTGTTGCATCGATTGGATATGGTACGTTGGCCGTAG
CGTAGCGCCTTTTTGGATCACGCCGTGTTCTTGTTGTTTGCTGACCTTCT
TCATACTGCGCTTTCCACGCGAAGCATACTACTGGCATTGTAAGTTGTGC
TCAACCACTTGCAAATCCATCTCTCCACCGCCCAATAACTAACCCCTTCG
AAACGCAACAACTGCAGGTAATTATGGCCAAGAAGAAGGAAGTATGTCAT
CCAATCATGCGCCAGTTCCAGCGCGGCAGCGTACAAAAGCAATATCTCTG
CGTCGTTGACGGCCACCTCCCCGAACCACCGAACGCCTCCTTCACAGTAG
AAGCGCCAATCCAACGCTCTCACCGATCTTACGTGCGCGAAATCGGCCAC
TCTAATCCCGACTCAAAGCCCTCCAAAACAGTATACACCGTTCTTGACAA
GTCGCAATCGAAGCAGCTCATGTTACTTCAAGCCACTCCGCATACCGGCC
GAACCCACCAGATCCGCGTGCATGCCGCTAGCAAGTCGTTACCCATCATT
GGCGATGATTTATACAACCCGAAAGAGTACGTTCAATACCATTCACGCGC
CTTCTTCGCGATTGAAAGCTCACCGAATCCGATTTTCCTCTTTGTCACTT
TTGTTGTCTTGTTTAGACATGCCATGTATGCAGATTATGACGAAATCAAC
GCTGCGGCACGTGATGCGACACTCACCAAGTATGGTGATGATAATCCTCT
TCGAAAAGGCCTCAAGTTGCATGCGTGGAGTATTTCTCTTGTCAATCCAT
TGACCAACGAGCGCGTTTCGTTTACCGCACCGCCGCCATCGCATATGAAC
AACCTCATCGAATGGAGTGACATGAGCCTACCGAGCTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:507201..508489-

>Ggra1391.t1 ID=Ggra1391.t1|Name=Ggra1391.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000092_pilon:507201..508489- (Gracilaria gracilis GNS1m male)
ATGAAGCCCATGTGTCTGATGCATCGCCTCTCACTGCTCCCCACCTTCAT
CCCCACCGCGCTCCCTCCGCGACTGCGCGTGCGCGCGCAACGCACCGCAT
CAACATGCACCACATCGCCGTCGCCGTCGTCGTCATCGCGTTCGCTGCGT
GACGAGATAGAGCAAGCCACACGCGAACGGCGTCGCTTCCGCATCGACAA
GAGCGCGTTGACGGAGGCCGAGAAGCGTGAGTTGAGGCTTCGTTCGAAGG
CCATCCCGCTCGTGGCGGACCATGAGCCCTTGGACGTTGTTTTCGAAGAC
GACACCTTTTTGGCGCTCAACAAGCCGTCCTACTTGAAGATGCATCCTAG
CCATCGCTTTGAAGGCGGTTCTCTGCTGAATCGCGCCATTGGTTACCTGG
GCTATCCGCCCCGCCTGTTGCATCGATTGGATATGCATACTACTGGCATT
GTAATTATGGCCAAGAAGAAGGAAGTATGTCATCCAATCATGCGCCAGTT
CCAGCGCGGCAGCGTACAAAAGCAATATCTCTGCGTCGTTGACGGCCACC
TCCCCGAACCACCGAACGCCTCCTTCACAGTAGAAGCGCCAATCCAACGC
TCTCACCGATCTTACGTGCGCGAAATCGGCCACTCTAATCCCGACTCAAA
GCCCTCCAAAACAGTATACACCGTTCTTGACAAGTCGCAATCGAAGCAGC
TCATGTTACTTCAAGCCACTCCGCATACCGGCCGAACCCACCAGATCCGC
GTGCATGCCGCTAGCAAGTCGTTACCCATCATTGGCGATGATTTATACAA
CCCGAAAGAACATGCCATGTATGCAGATTATGACGAAATCAACGCTGCGG
CACGTGATGCGACACTCACCAAGTATGGTGATGATAATCCTCTTCGAAAA
GGCCTCAAGTTGCATGCGTGGAGTATTTCTCTTGTCAATCCATTGACCAA
CGAGCGCGTTTCGTTTACCGCACCGCCGCCATCGCATATGAACAACCTCA
TCGAATGGAGTGACATGAGCCTACCGAGCTAA
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