Ggra1390.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1390.t1
Unique Name	Ggra1390.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	590

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:505026..506795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946483.Cenrod_2391
Max annot lvl	28216\|Betaproteobacteria
Evalue	6.44e-31
EggNOG OGs	COG0438@1\|root,COG0438@2\|Bacteria,1RI6Q@1224\|Proteobacteria,2VZM1@28216\|Betaproteobacteria,4AGYE@80864\|Comamonadaceae
Description	transferase activity, transferring glycosyl groups
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1390	Ggra1390	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 505026..506795 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1390.t1.start1	Ggra1390.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 505026..505028 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1390.t1.CDS1	Ggra1390.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 505026..506795 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1390.t1.exon1	Ggra1390.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 505026..506795 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1390.t1.stop1	Ggra1390.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 506793..506795 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1390.t1	Ggra1390.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 505026..506795 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:505026..506795+
coding sequence from alignment at tig00000092_pilon:505026..506795+

mRNA sequence

>Ggra1390.t1 ID=Ggra1390.t1|Name=Ggra1390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=590bp
LLAYLWLARFNTDACSADARAQAAGEAASGVADGAQSFVNYDFFITIYSY
DRPRQLLRLLQDVRREAHHASLTVGVNVIDDNSLSCVFQPLNRNLFDSYS
SSSSRSQPLHHLLPEHAASCSARDRFRHVEAFLANNSWSLYVSHYRHARR
RYWHLIRMAHALLHPISSTFYIFLPDDDRLARNFFPAVKHAWNSIQHARK
LTLMLHVEQSRESVAVWTDFKPRNIGDGITRIGWVESGNFMCTEHFLRFF
NWSFPHIGVERWIRNPPISSGVGATLSELIHSSSHRMYRTQQSYVAHVGV
SMSKMNAQFRDNNAPALLTKYFADGEHVYRQHLTDAATVTASIASVWTRE
TALHSAVHSLATQVDHLNVYLNGYDSVPSYLHAPYITVIRSQDKTSRGDA
GDIGKFFWSNEIETDFHLTADDDIIYPPDYVQSLREFINGFPSPVVVGVH
GIRIIQEDLTPSNGARGKGYYGSRKVFMAVDQLRQPKNVHIIGTGTMMYR
PRDIGHIDIDSTFQEPNMADVWFGLLAQKLKMPMMIIPHEEGWIKEVPGT
FEDSIYKRSTRSRTSDRLQTRAAKSIEMWKLHLPLSNAT*

spliced messenger RNA

>Ggra1390.t1 ID=Ggra1390.t1|Name=Ggra1390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1770bp|location=Sequence derived from alignment at tig00000092_pilon:505026..506795+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTGGCGTACTTGTGGCTCGCGCGCTTCAACACTGACGCCTGTTCGGC
GGACGCGCGCGCGCAAGCTGCTGGCGAGGCTGCGTCCGGCGTGGCTGATG
GCGCGCAGTCGTTCGTCAACTATGATTTCTTCATCACCATCTACTCGTAC
GATCGGCCGCGCCAGCTGCTACGCCTGCTTCAAGACGTGAGACGCGAGGC
GCACCACGCGTCGCTCACAGTGGGCGTCAATGTCATCGATGACAACTCGC
TTTCCTGCGTCTTTCAGCCCTTGAATCGCAACCTTTTCGACTCGTACTCG
TCCTCATCTTCACGCTCACAGCCGCTGCATCACCTGCTCCCGGAGCACGC
CGCATCGTGCTCTGCGCGCGATCGCTTCCGCCATGTAGAGGCCTTTTTGG
CCAACAATTCATGGAGTTTGTACGTTTCGCATTACCGCCATGCGCGCCGT
CGTTACTGGCATCTGATTCGCATGGCGCACGCGTTGTTGCATCCCATATC
GTCTACCTTCTACATCTTCCTGCCGGATGACGATCGTCTGGCACGCAATT
TCTTCCCAGCAGTCAAACACGCGTGGAATTCGATCCAGCACGCGCGCAAG
CTTACGCTCATGCTTCACGTGGAGCAATCGAGAGAATCGGTTGCGGTGTG
GACCGATTTCAAGCCGCGAAACATTGGTGATGGTATCACCCGCATTGGTT
GGGTTGAATCGGGTAACTTCATGTGTACAGAGCACTTTCTACGTTTCTTC
AACTGGTCCTTCCCGCACATTGGCGTCGAGCGATGGATACGAAATCCTCC
CATTTCGTCTGGTGTGGGTGCCACTCTCTCAGAGCTTATTCATTCTTCTT
CGCACCGCATGTACCGGACGCAGCAATCGTACGTGGCTCATGTCGGCGTG
TCGATGTCCAAGATGAACGCTCAATTCAGAGATAACAACGCCCCTGCTTT
GCTCACCAAGTATTTCGCGGATGGGGAGCACGTTTACCGACAACACTTGA
CAGACGCTGCCACTGTAACCGCGTCCATAGCATCAGTATGGACTCGGGAA
ACCGCGCTTCATTCAGCTGTGCATTCGTTGGCTACTCAAGTAGATCACCT
CAACGTGTATCTCAACGGCTACGACTCCGTGCCGTCTTATCTCCATGCGC
CGTACATCACTGTGATACGCAGTCAGGACAAAACGTCGCGAGGGGATGCC
GGTGACATTGGAAAGTTCTTCTGGAGCAATGAAATCGAAACTGATTTCCA
CCTCACAGCTGATGATGACATCATCTATCCACCAGATTATGTTCAATCGC
TCCGTGAGTTTATAAATGGCTTTCCATCCCCCGTCGTAGTGGGCGTGCAC
GGCATTCGCATCATACAGGAAGATCTCACCCCGTCAAATGGCGCCAGAGG
AAAGGGATACTACGGTTCTCGCAAAGTTTTCATGGCCGTCGACCAACTTC
GCCAACCAAAAAACGTCCACATCATTGGTACAGGCACTATGATGTATCGA
CCGAGGGATATAGGCCACATTGACATCGATAGCACCTTCCAAGAGCCGAA
CATGGCCGACGTTTGGTTCGGACTTCTGGCCCAGAAACTGAAGATGCCAA
TGATGATTATTCCACACGAAGAAGGGTGGATCAAAGAAGTACCGGGCACG
TTTGAAGACTCCATCTACAAACGCTCTACGCGAAGCAGGACTTCAGATAG
ATTGCAAACACGTGCCGCGAAAAGTATCGAGATGTGGAAATTGCATCTTC
CTTTATCGAACGCGACGTAA

protein sequence of Ggra1390.t1

>Ggra1390.t1 ID=Ggra1390.t1|Name=Ggra1390.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=590bp
LLAYLWLARFNTDACSADARAQAAGEAASGVADGAQSFVNYDFFITIYSY
DRPRQLLRLLQDVRREAHHASLTVGVNVIDDNSLSCVFQPLNRNLFDSYS
SSSSRSQPLHHLLPEHAASCSARDRFRHVEAFLANNSWSLYVSHYRHARR
RYWHLIRMAHALLHPISSTFYIFLPDDDRLARNFFPAVKHAWNSIQHARK
LTLMLHVEQSRESVAVWTDFKPRNIGDGITRIGWVESGNFMCTEHFLRFF
NWSFPHIGVERWIRNPPISSGVGATLSELIHSSSHRMYRTQQSYVAHVGV
SMSKMNAQFRDNNAPALLTKYFADGEHVYRQHLTDAATVTASIASVWTRE
TALHSAVHSLATQVDHLNVYLNGYDSVPSYLHAPYITVIRSQDKTSRGDA
GDIGKFFWSNEIETDFHLTADDDIIYPPDYVQSLREFINGFPSPVVVGVH
GIRIIQEDLTPSNGARGKGYYGSRKVFMAVDQLRQPKNVHIIGTGTMMYR
PRDIGHIDIDSTFQEPNMADVWFGLLAQKLKMPMMIIPHEEGWIKEVPGT
FEDSIYKRSTRSRTSDRLQTRAAKSIEMWKLHLPLSNAT*

mRNA from alignment at tig00000092_pilon:505026..506795+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1390.t1 ID=Ggra1390.t1|Name=Ggra1390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1770bp|location=Sequence derived from alignment at tig00000092_pilon:505026..506795+ (Gracilaria gracilis GNS1m male)
TTGCTGGCGTACTTGTGGCTCGCGCGCTTCAACACTGACGCCTGTTCGGC
GGACGCGCGCGCGCAAGCTGCTGGCGAGGCTGCGTCCGGCGTGGCTGATG
GCGCGCAGTCGTTCGTCAACTATGATTTCTTCATCACCATCTACTCGTAC
GATCGGCCGCGCCAGCTGCTACGCCTGCTTCAAGACGTGAGACGCGAGGC
GCACCACGCGTCGCTCACAGTGGGCGTCAATGTCATCGATGACAACTCGC
TTTCCTGCGTCTTTCAGCCCTTGAATCGCAACCTTTTCGACTCGTACTCG
TCCTCATCTTCACGCTCACAGCCGCTGCATCACCTGCTCCCGGAGCACGC
CGCATCGTGCTCTGCGCGCGATCGCTTCCGCCATGTAGAGGCCTTTTTGG
CCAACAATTCATGGAGTTTGTACGTTTCGCATTACCGCCATGCGCGCCGT
CGTTACTGGCATCTGATTCGCATGGCGCACGCGTTGTTGCATCCCATATC
GTCTACCTTCTACATCTTCCTGCCGGATGACGATCGTCTGGCACGCAATT
TCTTCCCAGCAGTCAAACACGCGTGGAATTCGATCCAGCACGCGCGCAAG
CTTACGCTCATGCTTCACGTGGAGCAATCGAGAGAATCGGTTGCGGTGTG
GACCGATTTCAAGCCGCGAAACATTGGTGATGGTATCACCCGCATTGGTT
GGGTTGAATCGGGTAACTTCATGTGTACAGAGCACTTTCTACGTTTCTTC
AACTGGTCCTTCCCGCACATTGGCGTCGAGCGATGGATACGAAATCCTCC
CATTTCGTCTGGTGTGGGTGCCACTCTCTCAGAGCTTATTCATTCTTCTT
CGCACCGCATGTACCGGACGCAGCAATCGTACGTGGCTCATGTCGGCGTG
TCGATGTCCAAGATGAACGCTCAATTCAGAGATAACAACGCCCCTGCTTT
GCTCACCAAGTATTTCGCGGATGGGGAGCACGTTTACCGACAACACTTGA
CAGACGCTGCCACTGTAACCGCGTCCATAGCATCAGTATGGACTCGGGAA
ACCGCGCTTCATTCAGCTGTGCATTCGTTGGCTACTCAAGTAGATCACCT
CAACGTGTATCTCAACGGCTACGACTCCGTGCCGTCTTATCTCCATGCGC
CGTACATCACTGTGATACGCAGTCAGGACAAAACGTCGCGAGGGGATGCC
GGTGACATTGGAAAGTTCTTCTGGAGCAATGAAATCGAAACTGATTTCCA
CCTCACAGCTGATGATGACATCATCTATCCACCAGATTATGTTCAATCGC
TCCGTGAGTTTATAAATGGCTTTCCATCCCCCGTCGTAGTGGGCGTGCAC
GGCATTCGCATCATACAGGAAGATCTCACCCCGTCAAATGGCGCCAGAGG
AAAGGGATACTACGGTTCTCGCAAAGTTTTCATGGCCGTCGACCAACTTC
GCCAACCAAAAAACGTCCACATCATTGGTACAGGCACTATGATGTATCGA
CCGAGGGATATAGGCCACATTGACATCGATAGCACCTTCCAAGAGCCGAA
CATGGCCGACGTTTGGTTCGGACTTCTGGCCCAGAAACTGAAGATGCCAA
TGATGATTATTCCACACGAAGAAGGGTGGATCAAAGAAGTACCGGGCACG
TTTGAAGACTCCATCTACAAACGCTCTACGCGAAGCAGGACTTCAGATAG
ATTGCAAACACGTGCCGCGAAAAGTATCGAGATGTGGAAATTGCATCTTC
CTTTATCGAACGCGACGTAA

Coding sequence (CDS) from alignment at tig00000092_pilon:505026..506795+

>Ggra1390.t1 ID=Ggra1390.t1|Name=Ggra1390.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1770bp|location=Sequence derived from alignment at tig00000092_pilon:505026..506795+ (Gracilaria gracilis GNS1m male)
TTGCTGGCGTACTTGTGGCTCGCGCGCTTCAACACTGACGCCTGTTCGGC
GGACGCGCGCGCGCAAGCTGCTGGCGAGGCTGCGTCCGGCGTGGCTGATG
GCGCGCAGTCGTTCGTCAACTATGATTTCTTCATCACCATCTACTCGTAC
GATCGGCCGCGCCAGCTGCTACGCCTGCTTCAAGACGTGAGACGCGAGGC
GCACCACGCGTCGCTCACAGTGGGCGTCAATGTCATCGATGACAACTCGC
TTTCCTGCGTCTTTCAGCCCTTGAATCGCAACCTTTTCGACTCGTACTCG
TCCTCATCTTCACGCTCACAGCCGCTGCATCACCTGCTCCCGGAGCACGC
CGCATCGTGCTCTGCGCGCGATCGCTTCCGCCATGTAGAGGCCTTTTTGG
CCAACAATTCATGGAGTTTGTACGTTTCGCATTACCGCCATGCGCGCCGT
CGTTACTGGCATCTGATTCGCATGGCGCACGCGTTGTTGCATCCCATATC
GTCTACCTTCTACATCTTCCTGCCGGATGACGATCGTCTGGCACGCAATT
TCTTCCCAGCAGTCAAACACGCGTGGAATTCGATCCAGCACGCGCGCAAG
CTTACGCTCATGCTTCACGTGGAGCAATCGAGAGAATCGGTTGCGGTGTG
GACCGATTTCAAGCCGCGAAACATTGGTGATGGTATCACCCGCATTGGTT
GGGTTGAATCGGGTAACTTCATGTGTACAGAGCACTTTCTACGTTTCTTC
AACTGGTCCTTCCCGCACATTGGCGTCGAGCGATGGATACGAAATCCTCC
CATTTCGTCTGGTGTGGGTGCCACTCTCTCAGAGCTTATTCATTCTTCTT
CGCACCGCATGTACCGGACGCAGCAATCGTACGTGGCTCATGTCGGCGTG
TCGATGTCCAAGATGAACGCTCAATTCAGAGATAACAACGCCCCTGCTTT
GCTCACCAAGTATTTCGCGGATGGGGAGCACGTTTACCGACAACACTTGA
CAGACGCTGCCACTGTAACCGCGTCCATAGCATCAGTATGGACTCGGGAA
ACCGCGCTTCATTCAGCTGTGCATTCGTTGGCTACTCAAGTAGATCACCT
CAACGTGTATCTCAACGGCTACGACTCCGTGCCGTCTTATCTCCATGCGC
CGTACATCACTGTGATACGCAGTCAGGACAAAACGTCGCGAGGGGATGCC
GGTGACATTGGAAAGTTCTTCTGGAGCAATGAAATCGAAACTGATTTCCA
CCTCACAGCTGATGATGACATCATCTATCCACCAGATTATGTTCAATCGC
TCCGTGAGTTTATAAATGGCTTTCCATCCCCCGTCGTAGTGGGCGTGCAC
GGCATTCGCATCATACAGGAAGATCTCACCCCGTCAAATGGCGCCAGAGG
AAAGGGATACTACGGTTCTCGCAAAGTTTTCATGGCCGTCGACCAACTTC
GCCAACCAAAAAACGTCCACATCATTGGTACAGGCACTATGATGTATCGA
CCGAGGGATATAGGCCACATTGACATCGATAGCACCTTCCAAGAGCCGAA
CATGGCCGACGTTTGGTTCGGACTTCTGGCCCAGAAACTGAAGATGCCAA
TGATGATTATTCCACACGAAGAAGGGTGGATCAAAGAAGTACCGGGCACG
TTTGAAGACTCCATCTACAAACGCTCTACGCGAAGCAGGACTTCAGATAG
ATTGCAAACACGTGCCGCGAAAAGTATCGAGATGTGGAAATTGCATCTTC
CTTTATCGAACGCGACGTAA