Ggra1389.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1389.t1
Unique NameGgra1389.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:503280..504446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR475CT
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue1e-146
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
EC1.1.1.18,1.1.1.369
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1389Ggra1389Gracilaria gracilis GNS1m malegenetig00000092_pilon 503280..504446 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1389.t1.stop1Ggra1389.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 503280..503282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1389.t1.CDS1Ggra1389.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 503280..504446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1389.t1.exon1Ggra1389.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 503280..504446 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1389.t1.start1Ggra1389.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 504444..504446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1389.t1Ggra1389.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 503280..504446 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1389.t1 ID=Ggra1389.t1|Name=Ggra1389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MTPAFVSAFAPTGLAGTSFVRARDDAGSGRRRVRSVPARVVVRASAADEP
VGVAVIGCGRIGQVHARTISQLNSASLVAVADPFEKFGRMVAEDFSTVWT
PDWQQLLTNDHVKGIVIGSPTPFHAEQIIKSAEAGKDIFCEKPISNDLAT
IDKCLAAVAANGVRLLIGFQRRFDANFIKVREQVASGAIGQLRMFHITSR
DPAPPPAQYLANSGGIFLDMSSHDWDMARFITGAEIESVYVTASAFEEAA
KEANDVDTAITVLKMSDGSFGTIDNSRRCSYGYDQRIEVFGSKGSLNSNN
RAPDTVVISNEHGLSAGLPYSFFMDRYAEAYSGAMTAFVDMIKEGTPAPC
SGFDGRASIVAAMAAAKSHAEGRSVRLEECDLLYSKVL*
back to top

spliced messenger RNA

>Ggra1389.t1 ID=Ggra1389.t1|Name=Ggra1389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000092_pilon:503280..504446- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTGCTTTTGTTTCTGCTTTCGCGCCGACTGGCTTGGCGGGCAC
ATCCTTCGTGCGCGCTCGTGACGACGCCGGCTCTGGCCGTCGGCGTGTAC
GCAGCGTGCCTGCCCGAGTTGTCGTCCGCGCTTCTGCGGCCGATGAGCCG
GTCGGAGTGGCCGTCATAGGCTGCGGTCGCATTGGTCAGGTACACGCGCG
CACCATCTCGCAGCTCAACTCCGCGTCGCTCGTCGCGGTCGCCGACCCGT
TCGAGAAGTTTGGCCGCATGGTTGCGGAAGATTTCTCCACCGTGTGGACG
CCCGACTGGCAACAACTGCTCACCAACGACCATGTCAAGGGCATTGTGAT
TGGCTCGCCTACCCCGTTTCACGCCGAGCAGATCATCAAGAGCGCGGAGG
CTGGCAAGGACATTTTCTGTGAGAAGCCCATTTCGAATGATCTCGCTACC
ATTGACAAGTGCTTGGCCGCTGTGGCGGCGAATGGCGTACGTTTGCTCAT
AGGCTTTCAGCGCAGGTTTGACGCCAATTTCATCAAGGTCAGGGAACAGG
TTGCCAGTGGCGCCATTGGTCAGCTTCGTATGTTTCATATTACTTCTAGG
GATCCGGCACCGCCGCCAGCGCAGTACCTTGCCAACTCGGGAGGTATCTT
CTTGGATATGAGTTCTCATGACTGGGATATGGCTAGATTTATCACTGGTG
CTGAGATTGAATCGGTCTATGTTACCGCTTCTGCCTTTGAAGAAGCCGCT
AAGGAAGCGAATGACGTGGACACGGCCATCACCGTTTTGAAGATGTCTGA
TGGCAGTTTTGGAACCATCGACAACTCGAGAAGATGTTCGTATGGTTATG
ATCAACGTATCGAGGTATTCGGCAGCAAGGGCAGCCTAAACAGCAATAAC
AGGGCCCCTGACACTGTAGTAATTAGCAATGAACATGGCCTCTCGGCTGG
GTTGCCCTACTCGTTCTTCATGGATAGATATGCGGAAGCATATTCTGGGG
CTATGACTGCGTTTGTGGATATGATTAAGGAGGGAACCCCCGCTCCTTGC
AGCGGTTTTGATGGACGCGCTTCTATTGTGGCCGCTATGGCCGCGGCCAA
GTCCCATGCTGAGGGTCGTTCTGTGCGACTTGAGGAATGTGACCTGCTTT
ATAGCAAAGTTTTGTGA
back to top

protein sequence of Ggra1389.t1

>Ggra1389.t1 ID=Ggra1389.t1|Name=Ggra1389.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MTPAFVSAFAPTGLAGTSFVRARDDAGSGRRRVRSVPARVVVRASAADEP
VGVAVIGCGRIGQVHARTISQLNSASLVAVADPFEKFGRMVAEDFSTVWT
PDWQQLLTNDHVKGIVIGSPTPFHAEQIIKSAEAGKDIFCEKPISNDLAT
IDKCLAAVAANGVRLLIGFQRRFDANFIKVREQVASGAIGQLRMFHITSR
DPAPPPAQYLANSGGIFLDMSSHDWDMARFITGAEIESVYVTASAFEEAA
KEANDVDTAITVLKMSDGSFGTIDNSRRCSYGYDQRIEVFGSKGSLNSNN
RAPDTVVISNEHGLSAGLPYSFFMDRYAEAYSGAMTAFVDMIKEGTPAPC
SGFDGRASIVAAMAAAKSHAEGRSVRLEECDLLYSKVL*
back to top

mRNA from alignment at tig00000092_pilon:503280..504446-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1389.t1 ID=Ggra1389.t1|Name=Ggra1389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000092_pilon:503280..504446- (Gracilaria gracilis GNS1m male)
ATGACGCCTGCTTTTGTTTCTGCTTTCGCGCCGACTGGCTTGGCGGGCAC
ATCCTTCGTGCGCGCTCGTGACGACGCCGGCTCTGGCCGTCGGCGTGTAC
GCAGCGTGCCTGCCCGAGTTGTCGTCCGCGCTTCTGCGGCCGATGAGCCG
GTCGGAGTGGCCGTCATAGGCTGCGGTCGCATTGGTCAGGTACACGCGCG
CACCATCTCGCAGCTCAACTCCGCGTCGCTCGTCGCGGTCGCCGACCCGT
TCGAGAAGTTTGGCCGCATGGTTGCGGAAGATTTCTCCACCGTGTGGACG
CCCGACTGGCAACAACTGCTCACCAACGACCATGTCAAGGGCATTGTGAT
TGGCTCGCCTACCCCGTTTCACGCCGAGCAGATCATCAAGAGCGCGGAGG
CTGGCAAGGACATTTTCTGTGAGAAGCCCATTTCGAATGATCTCGCTACC
ATTGACAAGTGCTTGGCCGCTGTGGCGGCGAATGGCGTACGTTTGCTCAT
AGGCTTTCAGCGCAGGTTTGACGCCAATTTCATCAAGGTCAGGGAACAGG
TTGCCAGTGGCGCCATTGGTCAGCTTCGTATGTTTCATATTACTTCTAGG
GATCCGGCACCGCCGCCAGCGCAGTACCTTGCCAACTCGGGAGGTATCTT
CTTGGATATGAGTTCTCATGACTGGGATATGGCTAGATTTATCACTGGTG
CTGAGATTGAATCGGTCTATGTTACCGCTTCTGCCTTTGAAGAAGCCGCT
AAGGAAGCGAATGACGTGGACACGGCCATCACCGTTTTGAAGATGTCTGA
TGGCAGTTTTGGAACCATCGACAACTCGAGAAGATGTTCGTATGGTTATG
ATCAACGTATCGAGGTATTCGGCAGCAAGGGCAGCCTAAACAGCAATAAC
AGGGCCCCTGACACTGTAGTAATTAGCAATGAACATGGCCTCTCGGCTGG
GTTGCCCTACTCGTTCTTCATGGATAGATATGCGGAAGCATATTCTGGGG
CTATGACTGCGTTTGTGGATATGATTAAGGAGGGAACCCCCGCTCCTTGC
AGCGGTTTTGATGGACGCGCTTCTATTGTGGCCGCTATGGCCGCGGCCAA
GTCCCATGCTGAGGGTCGTTCTGTGCGACTTGAGGAATGTGACCTGCTTT
ATAGCAAAGTTTTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000092_pilon:503280..504446-

>Ggra1389.t1 ID=Ggra1389.t1|Name=Ggra1389.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000092_pilon:503280..504446- (Gracilaria gracilis GNS1m male)
ATGACGCCTGCTTTTGTTTCTGCTTTCGCGCCGACTGGCTTGGCGGGCAC
ATCCTTCGTGCGCGCTCGTGACGACGCCGGCTCTGGCCGTCGGCGTGTAC
GCAGCGTGCCTGCCCGAGTTGTCGTCCGCGCTTCTGCGGCCGATGAGCCG
GTCGGAGTGGCCGTCATAGGCTGCGGTCGCATTGGTCAGGTACACGCGCG
CACCATCTCGCAGCTCAACTCCGCGTCGCTCGTCGCGGTCGCCGACCCGT
TCGAGAAGTTTGGCCGCATGGTTGCGGAAGATTTCTCCACCGTGTGGACG
CCCGACTGGCAACAACTGCTCACCAACGACCATGTCAAGGGCATTGTGAT
TGGCTCGCCTACCCCGTTTCACGCCGAGCAGATCATCAAGAGCGCGGAGG
CTGGCAAGGACATTTTCTGTGAGAAGCCCATTTCGAATGATCTCGCTACC
ATTGACAAGTGCTTGGCCGCTGTGGCGGCGAATGGCGTACGTTTGCTCAT
AGGCTTTCAGCGCAGGTTTGACGCCAATTTCATCAAGGTCAGGGAACAGG
TTGCCAGTGGCGCCATTGGTCAGCTTCGTATGTTTCATATTACTTCTAGG
GATCCGGCACCGCCGCCAGCGCAGTACCTTGCCAACTCGGGAGGTATCTT
CTTGGATATGAGTTCTCATGACTGGGATATGGCTAGATTTATCACTGGTG
CTGAGATTGAATCGGTCTATGTTACCGCTTCTGCCTTTGAAGAAGCCGCT
AAGGAAGCGAATGACGTGGACACGGCCATCACCGTTTTGAAGATGTCTGA
TGGCAGTTTTGGAACCATCGACAACTCGAGAAGATGTTCGTATGGTTATG
ATCAACGTATCGAGGTATTCGGCAGCAAGGGCAGCCTAAACAGCAATAAC
AGGGCCCCTGACACTGTAGTAATTAGCAATGAACATGGCCTCTCGGCTGG
GTTGCCCTACTCGTTCTTCATGGATAGATATGCGGAAGCATATTCTGGGG
CTATGACTGCGTTTGTGGATATGATTAAGGAGGGAACCCCCGCTCCTTGC
AGCGGTTTTGATGGACGCGCTTCTATTGTGGCCGCTATGGCCGCGGCCAA
GTCCCATGCTGAGGGTCGTTCTGTGCGACTTGAGGAATGTGACCTGCTTT
ATAGCAAAGTTTTGTGA
back to top