Ggra1388.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1388.t1
Unique NameGgra1388.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:501339..502721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703290.1
Preferred nameTRP5
PFAMsPALP,Trp_syntA
Max annot lvl2759|Eukaryota
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01694,ko:K01696,ko:K10882
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko01100,ko01110,ko01130,ko01230,ko03440,ko03460,map00260,map00400,map01100,map01110,map01130,map01230,map03440,map03460
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009683,GO:0009684,GO:0009850,GO:0009851,GO:0009941,GO:0009987,GO:0010817,GO:0016020,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0019904,GO:0031967,GO:0031975,GO:0032787,GO:0034641,GO:0034754,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.15e-225
EggNOG OGsCOG0133@1|root,KOG1395@2759|Eukaryota
EC4.2.1.20
Descriptiontryptophan synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1388Ggra1388Gracilaria gracilis GNS1m malegenetig00000092_pilon 501339..502721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1388.t1.stop1Ggra1388.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 501339..501341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1388.t1.CDS1Ggra1388.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 501339..502721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1388.t1.exon1Ggra1388.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 501339..502721 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1388.t1.start1Ggra1388.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 502719..502721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1388.t1Ggra1388.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 501339..502721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1388.t1 ID=Ggra1388.t1|Name=Ggra1388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=461bp
MEHLAFAPSFLGQTSLRPTKHTLSCRSKRAAPLLSTPRMVAVDPSSIIDT
TFNPNVPNERGRFGRFGGQYVPETLMSCLQELEASYHRIKEDPEFLQELG
GLLRDYVGRPSPLYFAERLTSRYARADGSGPQIYLKREDLNHTGAHKINN
SLAQVLLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAKDME
RQALNVFRMRLLGAEVRPVTSGSATLTNALSEAIRDWVTYPIETHYIVGS
VAGPHPYPMIVRDFQACIGRETREQALEKWGGKPDILLACVGGGSNAMGL
FSDFRSDEDVRLIGVEAAGKGLETEEHAATLTKGTLGVLHGAMSYQLQSE
HGMPAEAHSVSAGLDYPGVGPEHSYLRDTKRAEYVSVTDDEALDAFKLLS
RIEGIIPALETSHAIAYLDKLCPTLDGSPRIVINCSGRGDKDVNTVVDYL
KQRGDTDVGL*
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spliced messenger RNA

>Ggra1388.t1 ID=Ggra1388.t1|Name=Ggra1388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000092_pilon:501339..502721- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACCTGGCATTTGCTCCAAGCTTCCTAGGTCAGACATCACTACG
CCCTACCAAGCACACACTCTCATGTCGTTCAAAACGCGCCGCTCCCCTGC
TCTCCACGCCACGAATGGTTGCCGTGGACCCCTCTTCCATAATCGACACA
ACGTTCAACCCAAACGTGCCGAATGAACGTGGAAGATTCGGACGATTTGG
AGGTCAGTATGTCCCAGAAACTCTAATGAGTTGCTTACAAGAGTTGGAGG
CTAGCTACCATAGGATCAAAGAAGATCCAGAGTTCCTTCAAGAGCTTGGT
GGTTTGTTGCGTGATTATGTCGGTCGACCTAGCCCGTTGTACTTCGCCGA
ACGACTTACGTCGCGTTATGCTCGAGCCGACGGAAGTGGGCCCCAGATAT
ACCTGAAGAGGGAGGATCTCAATCACACAGGCGCTCATAAGATAAACAAT
TCTCTTGCACAGGTTTTATTGGCAAAGCGTCTTGGTAAGACTCGCATCAT
TGCCGAGACCGGTGCTGGTCAGCACGGAGTCGCTACGGCAACTGTTTGCG
CTCGATTTGGACTACAATGTATTGTGTACATGGGCGCAAAGGATATGGAA
CGCCAAGCGCTTAATGTTTTCCGTATGCGACTTCTTGGCGCTGAAGTTCG
TCCAGTCACGTCAGGATCTGCCACTCTTACCAACGCTTTGTCTGAGGCAA
TTCGTGACTGGGTGACTTATCCGATAGAAACTCATTACATTGTGGGAAGT
GTCGCCGGTCCCCATCCGTACCCCATGATTGTTCGTGACTTCCAGGCGTG
CATTGGACGAGAAACACGCGAACAGGCTTTGGAGAAATGGGGTGGAAAGC
CAGATATTCTTTTGGCTTGCGTTGGCGGTGGTTCGAATGCTATGGGGCTT
TTCAGTGATTTCAGATCTGATGAAGATGTTCGCCTTATTGGTGTAGAGGC
AGCAGGAAAGGGATTGGAGACAGAGGAACATGCTGCCACACTTACAAAAG
GAACCCTCGGTGTTCTGCATGGCGCTATGAGTTATCAATTGCAGAGTGAG
CATGGAATGCCGGCAGAGGCGCACTCAGTTTCCGCTGGTCTGGATTATCC
GGGTGTGGGACCAGAACATAGTTATCTGCGAGATACGAAACGGGCAGAAT
ATGTCAGCGTAACTGATGATGAGGCTTTGGATGCGTTCAAACTACTCAGT
CGGATTGAAGGTATCATCCCGGCTTTGGAAACGTCCCATGCTATCGCTTA
CCTGGACAAATTGTGTCCAACGTTGGACGGCTCACCACGAATTGTGATCA
ATTGTTCTGGACGTGGAGACAAGGATGTGAACACCGTTGTTGATTATTTG
AAGCAGCGAGGGGACACAGACGTGGGGCTTTAG
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protein sequence of Ggra1388.t1

>Ggra1388.t1 ID=Ggra1388.t1|Name=Ggra1388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MEHLAFAPSFLGQTSLRPTKHTLSCRSKRAAPLLSTPRMVAVDPSSIIDT
TFNPNVPNERGRFGRFGGQYVPETLMSCLQELEASYHRIKEDPEFLQELG
GLLRDYVGRPSPLYFAERLTSRYARADGSGPQIYLKREDLNHTGAHKINN
SLAQVLLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAKDME
RQALNVFRMRLLGAEVRPVTSGSATLTNALSEAIRDWVTYPIETHYIVGS
VAGPHPYPMIVRDFQACIGRETREQALEKWGGKPDILLACVGGGSNAMGL
FSDFRSDEDVRLIGVEAAGKGLETEEHAATLTKGTLGVLHGAMSYQLQSE
HGMPAEAHSVSAGLDYPGVGPEHSYLRDTKRAEYVSVTDDEALDAFKLLS
RIEGIIPALETSHAIAYLDKLCPTLDGSPRIVINCSGRGDKDVNTVVDYL
KQRGDTDVGL*
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mRNA from alignment at tig00000092_pilon:501339..502721-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1388.t1 ID=Ggra1388.t1|Name=Ggra1388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000092_pilon:501339..502721- (Gracilaria gracilis GNS1m male)
ATGGAGCACCTGGCATTTGCTCCAAGCTTCCTAGGTCAGACATCACTACG
CCCTACCAAGCACACACTCTCATGTCGTTCAAAACGCGCCGCTCCCCTGC
TCTCCACGCCACGAATGGTTGCCGTGGACCCCTCTTCCATAATCGACACA
ACGTTCAACCCAAACGTGCCGAATGAACGTGGAAGATTCGGACGATTTGG
AGGTCAGTATGTCCCAGAAACTCTAATGAGTTGCTTACAAGAGTTGGAGG
CTAGCTACCATAGGATCAAAGAAGATCCAGAGTTCCTTCAAGAGCTTGGT
GGTTTGTTGCGTGATTATGTCGGTCGACCTAGCCCGTTGTACTTCGCCGA
ACGACTTACGTCGCGTTATGCTCGAGCCGACGGAAGTGGGCCCCAGATAT
ACCTGAAGAGGGAGGATCTCAATCACACAGGCGCTCATAAGATAAACAAT
TCTCTTGCACAGGTTTTATTGGCAAAGCGTCTTGGTAAGACTCGCATCAT
TGCCGAGACCGGTGCTGGTCAGCACGGAGTCGCTACGGCAACTGTTTGCG
CTCGATTTGGACTACAATGTATTGTGTACATGGGCGCAAAGGATATGGAA
CGCCAAGCGCTTAATGTTTTCCGTATGCGACTTCTTGGCGCTGAAGTTCG
TCCAGTCACGTCAGGATCTGCCACTCTTACCAACGCTTTGTCTGAGGCAA
TTCGTGACTGGGTGACTTATCCGATAGAAACTCATTACATTGTGGGAAGT
GTCGCCGGTCCCCATCCGTACCCCATGATTGTTCGTGACTTCCAGGCGTG
CATTGGACGAGAAACACGCGAACAGGCTTTGGAGAAATGGGGTGGAAAGC
CAGATATTCTTTTGGCTTGCGTTGGCGGTGGTTCGAATGCTATGGGGCTT
TTCAGTGATTTCAGATCTGATGAAGATGTTCGCCTTATTGGTGTAGAGGC
AGCAGGAAAGGGATTGGAGACAGAGGAACATGCTGCCACACTTACAAAAG
GAACCCTCGGTGTTCTGCATGGCGCTATGAGTTATCAATTGCAGAGTGAG
CATGGAATGCCGGCAGAGGCGCACTCAGTTTCCGCTGGTCTGGATTATCC
GGGTGTGGGACCAGAACATAGTTATCTGCGAGATACGAAACGGGCAGAAT
ATGTCAGCGTAACTGATGATGAGGCTTTGGATGCGTTCAAACTACTCAGT
CGGATTGAAGGTATCATCCCGGCTTTGGAAACGTCCCATGCTATCGCTTA
CCTGGACAAATTGTGTCCAACGTTGGACGGCTCACCACGAATTGTGATCA
ATTGTTCTGGACGTGGAGACAAGGATGTGAACACCGTTGTTGATTATTTG
AAGCAGCGAGGGGACACAGACGTGGGGCTTTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:501339..502721-

>Ggra1388.t1 ID=Ggra1388.t1|Name=Ggra1388.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00000092_pilon:501339..502721- (Gracilaria gracilis GNS1m male)
ATGGAGCACCTGGCATTTGCTCCAAGCTTCCTAGGTCAGACATCACTACG
CCCTACCAAGCACACACTCTCATGTCGTTCAAAACGCGCCGCTCCCCTGC
TCTCCACGCCACGAATGGTTGCCGTGGACCCCTCTTCCATAATCGACACA
ACGTTCAACCCAAACGTGCCGAATGAACGTGGAAGATTCGGACGATTTGG
AGGTCAGTATGTCCCAGAAACTCTAATGAGTTGCTTACAAGAGTTGGAGG
CTAGCTACCATAGGATCAAAGAAGATCCAGAGTTCCTTCAAGAGCTTGGT
GGTTTGTTGCGTGATTATGTCGGTCGACCTAGCCCGTTGTACTTCGCCGA
ACGACTTACGTCGCGTTATGCTCGAGCCGACGGAAGTGGGCCCCAGATAT
ACCTGAAGAGGGAGGATCTCAATCACACAGGCGCTCATAAGATAAACAAT
TCTCTTGCACAGGTTTTATTGGCAAAGCGTCTTGGTAAGACTCGCATCAT
TGCCGAGACCGGTGCTGGTCAGCACGGAGTCGCTACGGCAACTGTTTGCG
CTCGATTTGGACTACAATGTATTGTGTACATGGGCGCAAAGGATATGGAA
CGCCAAGCGCTTAATGTTTTCCGTATGCGACTTCTTGGCGCTGAAGTTCG
TCCAGTCACGTCAGGATCTGCCACTCTTACCAACGCTTTGTCTGAGGCAA
TTCGTGACTGGGTGACTTATCCGATAGAAACTCATTACATTGTGGGAAGT
GTCGCCGGTCCCCATCCGTACCCCATGATTGTTCGTGACTTCCAGGCGTG
CATTGGACGAGAAACACGCGAACAGGCTTTGGAGAAATGGGGTGGAAAGC
CAGATATTCTTTTGGCTTGCGTTGGCGGTGGTTCGAATGCTATGGGGCTT
TTCAGTGATTTCAGATCTGATGAAGATGTTCGCCTTATTGGTGTAGAGGC
AGCAGGAAAGGGATTGGAGACAGAGGAACATGCTGCCACACTTACAAAAG
GAACCCTCGGTGTTCTGCATGGCGCTATGAGTTATCAATTGCAGAGTGAG
CATGGAATGCCGGCAGAGGCGCACTCAGTTTCCGCTGGTCTGGATTATCC
GGGTGTGGGACCAGAACATAGTTATCTGCGAGATACGAAACGGGCAGAAT
ATGTCAGCGTAACTGATGATGAGGCTTTGGATGCGTTCAAACTACTCAGT
CGGATTGAAGGTATCATCCCGGCTTTGGAAACGTCCCATGCTATCGCTTA
CCTGGACAAATTGTGTCCAACGTTGGACGGCTCACCACGAATTGTGATCA
ATTGTTCTGGACGTGGAGACAAGGATGTGAACACCGTTGTTGATTATTTG
AAGCAGCGAGGGGACACAGACGTGGGGCTTTAG
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