Ggra1387.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1387.t1
Unique NameGgra1387.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:500465..501184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA064CT
PFAMsCPP1-like
Max annot lvl2759|Eukaryota
Evalue6.28e-47
EggNOG OGs2E785@1|root,2SDV7@2759|Eukaryota
DescriptionPfam:DUF3353
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1387Ggra1387Gracilaria gracilis GNS1m malegenetig00000092_pilon 500465..501184 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1387.t1.start1Ggra1387.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 500465..500467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1387.t1.CDS1Ggra1387.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 500465..501184 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1387.t1.exon1Ggra1387.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 500465..501184 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1387.t1.stop1Ggra1387.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 501182..501184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1387.t1Ggra1387.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 500465..501184 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1387.t1 ID=Ggra1387.t1|Name=Ggra1387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MLFGFGSKRKSATNKGRSGTNPYRALGVGEDATYDEVEAAVKSLSIKYAD
DPKKLMMLDVYKDQIFEDKLQKRMSGTLIPKIKESPYERKPQPKKRFVMP
AWAQGIFKLPDLRYFKRTGIIMGIFFILGFVTPTLAGSCMAMAFIAAAGF
LYNRGLPEPVRDDYGAYGEVRPVKHRIVLKTVLINLGVAAVFFGLAQLYM
LYLPLPVWSPPDAFVNAAVVFGLWMSCLLFMAQDPNDIY*
back to top

spliced messenger RNA

>Ggra1387.t1 ID=Ggra1387.t1|Name=Ggra1387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000092_pilon:500465..501184+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATTTGGTTTTGGCAGCAAGAGGAAGAGTGCTACAAACAAAGGGAG
GTCTGGCACCAATCCGTATCGTGCGCTCGGTGTCGGCGAGGATGCCACCT
ACGATGAAGTCGAAGCAGCAGTCAAAAGTCTGTCCATAAAATATGCGGAC
GACCCGAAGAAGCTTATGATGCTTGACGTGTATAAAGATCAAATCTTCGA
AGACAAGTTACAAAAGCGCATGTCCGGAACACTCATACCAAAAATTAAGG
AGTCTCCGTACGAGAGGAAGCCACAACCAAAGAAGAGATTTGTCATGCCC
GCCTGGGCACAGGGCATTTTTAAGCTTCCTGACCTTCGCTACTTCAAACG
CACCGGCATTATCATGGGAATCTTTTTCATCCTTGGATTTGTCACCCCCA
CCCTGGCCGGCTCGTGTATGGCCATGGCCTTCATTGCAGCTGCAGGTTTC
TTGTACAATCGAGGCCTCCCAGAACCTGTGCGGGACGATTACGGCGCATA
TGGCGAGGTTCGCCCGGTCAAGCATCGTATTGTGCTGAAGACTGTTTTGA
TCAACCTTGGAGTTGCCGCTGTGTTTTTCGGATTGGCACAGCTGTACATG
CTCTACCTTCCATTACCGGTATGGTCACCACCTGACGCTTTCGTTAACGC
TGCTGTTGTGTTTGGTTTATGGATGTCCTGTTTACTTTTCATGGCTCAAG
ATCCAAACGATATTTACTAG
back to top

protein sequence of Ggra1387.t1

>Ggra1387.t1 ID=Ggra1387.t1|Name=Ggra1387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MLFGFGSKRKSATNKGRSGTNPYRALGVGEDATYDEVEAAVKSLSIKYAD
DPKKLMMLDVYKDQIFEDKLQKRMSGTLIPKIKESPYERKPQPKKRFVMP
AWAQGIFKLPDLRYFKRTGIIMGIFFILGFVTPTLAGSCMAMAFIAAAGF
LYNRGLPEPVRDDYGAYGEVRPVKHRIVLKTVLINLGVAAVFFGLAQLYM
LYLPLPVWSPPDAFVNAAVVFGLWMSCLLFMAQDPNDIY*
back to top

mRNA from alignment at tig00000092_pilon:500465..501184+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1387.t1 ID=Ggra1387.t1|Name=Ggra1387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000092_pilon:500465..501184+ (Gracilaria gracilis GNS1m male)
ATGTTATTTGGTTTTGGCAGCAAGAGGAAGAGTGCTACAAACAAAGGGAG
GTCTGGCACCAATCCGTATCGTGCGCTCGGTGTCGGCGAGGATGCCACCT
ACGATGAAGTCGAAGCAGCAGTCAAAAGTCTGTCCATAAAATATGCGGAC
GACCCGAAGAAGCTTATGATGCTTGACGTGTATAAAGATCAAATCTTCGA
AGACAAGTTACAAAAGCGCATGTCCGGAACACTCATACCAAAAATTAAGG
AGTCTCCGTACGAGAGGAAGCCACAACCAAAGAAGAGATTTGTCATGCCC
GCCTGGGCACAGGGCATTTTTAAGCTTCCTGACCTTCGCTACTTCAAACG
CACCGGCATTATCATGGGAATCTTTTTCATCCTTGGATTTGTCACCCCCA
CCCTGGCCGGCTCGTGTATGGCCATGGCCTTCATTGCAGCTGCAGGTTTC
TTGTACAATCGAGGCCTCCCAGAACCTGTGCGGGACGATTACGGCGCATA
TGGCGAGGTTCGCCCGGTCAAGCATCGTATTGTGCTGAAGACTGTTTTGA
TCAACCTTGGAGTTGCCGCTGTGTTTTTCGGATTGGCACAGCTGTACATG
CTCTACCTTCCATTACCGGTATGGTCACCACCTGACGCTTTCGTTAACGC
TGCTGTTGTGTTTGGTTTATGGATGTCCTGTTTACTTTTCATGGCTCAAG
ATCCAAACGATATTTACTAG
back to top

Coding sequence (CDS) from alignment at tig00000092_pilon:500465..501184+

>Ggra1387.t1 ID=Ggra1387.t1|Name=Ggra1387.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000092_pilon:500465..501184+ (Gracilaria gracilis GNS1m male)
ATGTTATTTGGTTTTGGCAGCAAGAGGAAGAGTGCTACAAACAAAGGGAG
GTCTGGCACCAATCCGTATCGTGCGCTCGGTGTCGGCGAGGATGCCACCT
ACGATGAAGTCGAAGCAGCAGTCAAAAGTCTGTCCATAAAATATGCGGAC
GACCCGAAGAAGCTTATGATGCTTGACGTGTATAAAGATCAAATCTTCGA
AGACAAGTTACAAAAGCGCATGTCCGGAACACTCATACCAAAAATTAAGG
AGTCTCCGTACGAGAGGAAGCCACAACCAAAGAAGAGATTTGTCATGCCC
GCCTGGGCACAGGGCATTTTTAAGCTTCCTGACCTTCGCTACTTCAAACG
CACCGGCATTATCATGGGAATCTTTTTCATCCTTGGATTTGTCACCCCCA
CCCTGGCCGGCTCGTGTATGGCCATGGCCTTCATTGCAGCTGCAGGTTTC
TTGTACAATCGAGGCCTCCCAGAACCTGTGCGGGACGATTACGGCGCATA
TGGCGAGGTTCGCCCGGTCAAGCATCGTATTGTGCTGAAGACTGTTTTGA
TCAACCTTGGAGTTGCCGCTGTGTTTTTCGGATTGGCACAGCTGTACATG
CTCTACCTTCCATTACCGGTATGGTCACCACCTGACGCTTTCGTTAACGC
TGCTGTTGTGTTTGGTTTATGGATGTCCTGTTTACTTTTCATGGCTCAAG
ATCCAAACGATATTTACTAG
back to top