Ggra1384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1384.t1
Unique Name	Ggra1384.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	619

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:458494..460350 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1384	Ggra1384	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 458494..460350 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1384.t1.stop1	Ggra1384.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 458494..458496 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1384.t1.CDS1	Ggra1384.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 458494..460350 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1384.t1.exon1	Ggra1384.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 458494..460350 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1384.t1.start1	Ggra1384.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 460348..460350 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1384.t1	Ggra1384.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 458494..460350 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:458494..460350-
coding sequence from alignment at tig00000092_pilon:458494..460350-

mRNA sequence

>Ggra1384.t1 ID=Ggra1384.t1|Name=Ggra1384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=619bp
MNYAQYVSRRPPSPPSPHHRYRSFAPSASLSSAASTVSSETPFTPASRPP
FHTAEAVSSQLHRRAVRDEYAALAAVVLANVQLDQQSERQEVIRIRLEHM
IIESEPANHRVLTLALSKCTARLDRITQQSRQLEHARTRMRVIEAKHFHG
TNAPSVEPRLRALHIRREHIVTLVDHIRCTLHDQVRIQHLLTTLVSKLSA
LYTLVTHLNRGATQNASEPSDRPAAYVPSRAPRVSSFTHDTSRRSSAARR
VSINPFAHSSTDQSKSSTNAWLRTDRAPTRADRSNTRSDRQTNRGRTLPT
QRSLPQRGGDNRRIPFVVKRALSYNASAVQNVSPIASEPLWANRSSSVHE
RTAAQSEPRLRLSETFKRNRKLSASTKSSGSIGGADVDPMSEPRISSIRS
THHDFGDADRLSASPVSPHMKPFDNCSLEESVMQQGNDAQLERAVLLDID
SLCTEASSVLSSSRSTHQEMSEKRSSSSLFGNEGRRGIGLNRLGFHRVRT
WSQIRKLWAEINELYGVVITHGPHLVEEKIVSTSSAEHGVLGEWISPRKG
RTSGIKGTVHKTIVAEAVRKVDDVVAWQQKLIVAIRRDSLEQKKTLRQAD
MVISEAYLQSLKSRSRPK*

spliced messenger RNA

>Ggra1384.t1 ID=Ggra1384.t1|Name=Ggra1384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00000092_pilon:458494..460350- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTACGCGCAGTACGTGAGTAGACGCCCGCCGTCTCCGCCTAGTCC
TCACCATCGCTACCGCTCGTTTGCGCCGTCTGCGTCGCTATCCTCCGCCG
CCTCCACCGTGTCATCGGAGACGCCGTTCACCCCGGCCTCCCGTCCGCCC
TTCCACACCGCCGAGGCCGTGTCCTCGCAGCTTCATCGCCGCGCCGTCCG
CGATGAATACGCCGCGTTGGCCGCCGTCGTGCTGGCCAACGTGCAGTTGG
ATCAACAAAGCGAGCGTCAAGAAGTCATCCGCATCCGACTGGAACACATG
ATCATCGAATCCGAGCCTGCCAACCATAGAGTGCTGACGCTCGCGCTCTC
CAAATGCACCGCCAGATTGGATCGCATCACACAACAATCTCGACAACTTG
AGCATGCGCGAACACGCATGCGTGTCATTGAGGCCAAGCACTTCCACGGC
ACCAATGCGCCGTCCGTGGAGCCTCGCCTCAGAGCGCTTCACATTCGACG
CGAGCACATCGTCACTTTGGTTGACCACATTCGCTGTACCTTACACGACC
AGGTGCGCATTCAGCACTTGCTCACCACGCTTGTTTCCAAACTGTCCGCC
TTGTATACACTGGTCACCCACTTGAACCGCGGTGCCACACAAAACGCATC
CGAACCTTCGGACCGGCCTGCTGCATATGTTCCGTCGCGCGCGCCGCGAG
TTAGCTCCTTCACGCACGATACCTCGCGACGCTCCTCCGCCGCTCGAAGG
GTTTCCATTAATCCGTTCGCTCATTCTTCCACTGACCAATCCAAGTCGTC
GACCAACGCGTGGCTTCGCACTGACCGGGCCCCCACCAGGGCAGATAGAA
GTAACACTCGTTCCGACCGACAAACCAACCGAGGACGAACTCTCCCCACG
CAACGCTCCTTGCCACAACGCGGGGGTGACAACCGTCGAATCCCATTTGT
CGTCAAGCGAGCTCTGTCATATAATGCTTCGGCCGTGCAGAACGTTTCCC
CTATAGCGTCCGAACCTCTGTGGGCAAATCGTTCTAGCAGCGTTCATGAA
CGGACGGCCGCGCAGAGTGAGCCTCGTTTACGCTTGAGCGAGACGTTCAA
GAGAAACAGAAAACTGTCAGCGTCTACAAAGAGCTCTGGCTCAATTGGTG
GCGCCGACGTGGACCCCATGTCAGAACCGCGTATATCCAGCATACGTAGT
ACGCACCACGACTTTGGAGACGCGGATAGACTGTCTGCGAGCCCGGTCAG
TCCGCACATGAAACCTTTTGACAACTGTTCTTTGGAAGAAAGCGTAATGC
AACAGGGCAATGATGCTCAGTTGGAGCGGGCGGTTCTCTTGGATATTGAC
TCTCTTTGCACCGAGGCTTCGTCGGTATTATCTTCTTCGCGGAGCACACA
TCAGGAGATGTCGGAGAAACGATCGTCATCATCGTTGTTTGGCAACGAGG
GTAGGAGAGGCATTGGGTTGAATAGGCTTGGGTTTCATCGCGTTCGAACA
TGGTCACAGATCCGGAAACTGTGGGCTGAGATTAATGAACTGTATGGTGT
GGTGATCACTCATGGCCCCCACTTGGTGGAGGAGAAGATCGTAAGTACAT
CTTCTGCTGAGCATGGTGTTTTGGGGGAATGGATCTCGCCACGAAAGGGA
AGGACGTCCGGCATCAAGGGCACGGTGCACAAGACGATTGTGGCTGAGGC
TGTGAGAAAAGTGGATGATGTGGTTGCCTGGCAGCAAAAGCTTATCGTGG
CGATCAGAAGAGACAGTCTGGAACAGAAGAAGACACTACGACAGGCTGAC
ATGGTGATTTCTGAGGCTTATTTACAATCATTGAAATCGCGGTCACGGCC
GAAGTGA

protein sequence of Ggra1384.t1

>Ggra1384.t1 ID=Ggra1384.t1|Name=Ggra1384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=619bp
MNYAQYVSRRPPSPPSPHHRYRSFAPSASLSSAASTVSSETPFTPASRPP
FHTAEAVSSQLHRRAVRDEYAALAAVVLANVQLDQQSERQEVIRIRLEHM
IIESEPANHRVLTLALSKCTARLDRITQQSRQLEHARTRMRVIEAKHFHG
TNAPSVEPRLRALHIRREHIVTLVDHIRCTLHDQVRIQHLLTTLVSKLSA
LYTLVTHLNRGATQNASEPSDRPAAYVPSRAPRVSSFTHDTSRRSSAARR
VSINPFAHSSTDQSKSSTNAWLRTDRAPTRADRSNTRSDRQTNRGRTLPT
QRSLPQRGGDNRRIPFVVKRALSYNASAVQNVSPIASEPLWANRSSSVHE
RTAAQSEPRLRLSETFKRNRKLSASTKSSGSIGGADVDPMSEPRISSIRS
THHDFGDADRLSASPVSPHMKPFDNCSLEESVMQQGNDAQLERAVLLDID
SLCTEASSVLSSSRSTHQEMSEKRSSSSLFGNEGRRGIGLNRLGFHRVRT
WSQIRKLWAEINELYGVVITHGPHLVEEKIVSTSSAEHGVLGEWISPRKG
RTSGIKGTVHKTIVAEAVRKVDDVVAWQQKLIVAIRRDSLEQKKTLRQAD
MVISEAYLQSLKSRSRPK*

mRNA from alignment at tig00000092_pilon:458494..460350-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1384.t1 ID=Ggra1384.t1|Name=Ggra1384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00000092_pilon:458494..460350- (Gracilaria gracilis GNS1m male)
ATGAATTACGCGCAGTACGTGAGTAGACGCCCGCCGTCTCCGCCTAGTCC
TCACCATCGCTACCGCTCGTTTGCGCCGTCTGCGTCGCTATCCTCCGCCG
CCTCCACCGTGTCATCGGAGACGCCGTTCACCCCGGCCTCCCGTCCGCCC
TTCCACACCGCCGAGGCCGTGTCCTCGCAGCTTCATCGCCGCGCCGTCCG
CGATGAATACGCCGCGTTGGCCGCCGTCGTGCTGGCCAACGTGCAGTTGG
ATCAACAAAGCGAGCGTCAAGAAGTCATCCGCATCCGACTGGAACACATG
ATCATCGAATCCGAGCCTGCCAACCATAGAGTGCTGACGCTCGCGCTCTC
CAAATGCACCGCCAGATTGGATCGCATCACACAACAATCTCGACAACTTG
AGCATGCGCGAACACGCATGCGTGTCATTGAGGCCAAGCACTTCCACGGC
ACCAATGCGCCGTCCGTGGAGCCTCGCCTCAGAGCGCTTCACATTCGACG
CGAGCACATCGTCACTTTGGTTGACCACATTCGCTGTACCTTACACGACC
AGGTGCGCATTCAGCACTTGCTCACCACGCTTGTTTCCAAACTGTCCGCC
TTGTATACACTGGTCACCCACTTGAACCGCGGTGCCACACAAAACGCATC
CGAACCTTCGGACCGGCCTGCTGCATATGTTCCGTCGCGCGCGCCGCGAG
TTAGCTCCTTCACGCACGATACCTCGCGACGCTCCTCCGCCGCTCGAAGG
GTTTCCATTAATCCGTTCGCTCATTCTTCCACTGACCAATCCAAGTCGTC
GACCAACGCGTGGCTTCGCACTGACCGGGCCCCCACCAGGGCAGATAGAA
GTAACACTCGTTCCGACCGACAAACCAACCGAGGACGAACTCTCCCCACG
CAACGCTCCTTGCCACAACGCGGGGGTGACAACCGTCGAATCCCATTTGT
CGTCAAGCGAGCTCTGTCATATAATGCTTCGGCCGTGCAGAACGTTTCCC
CTATAGCGTCCGAACCTCTGTGGGCAAATCGTTCTAGCAGCGTTCATGAA
CGGACGGCCGCGCAGAGTGAGCCTCGTTTACGCTTGAGCGAGACGTTCAA
GAGAAACAGAAAACTGTCAGCGTCTACAAAGAGCTCTGGCTCAATTGGTG
GCGCCGACGTGGACCCCATGTCAGAACCGCGTATATCCAGCATACGTAGT
ACGCACCACGACTTTGGAGACGCGGATAGACTGTCTGCGAGCCCGGTCAG
TCCGCACATGAAACCTTTTGACAACTGTTCTTTGGAAGAAAGCGTAATGC
AACAGGGCAATGATGCTCAGTTGGAGCGGGCGGTTCTCTTGGATATTGAC
TCTCTTTGCACCGAGGCTTCGTCGGTATTATCTTCTTCGCGGAGCACACA
TCAGGAGATGTCGGAGAAACGATCGTCATCATCGTTGTTTGGCAACGAGG
GTAGGAGAGGCATTGGGTTGAATAGGCTTGGGTTTCATCGCGTTCGAACA
TGGTCACAGATCCGGAAACTGTGGGCTGAGATTAATGAACTGTATGGTGT
GGTGATCACTCATGGCCCCCACTTGGTGGAGGAGAAGATCGTAAGTACAT
CTTCTGCTGAGCATGGTGTTTTGGGGGAATGGATCTCGCCACGAAAGGGA
AGGACGTCCGGCATCAAGGGCACGGTGCACAAGACGATTGTGGCTGAGGC
TGTGAGAAAAGTGGATGATGTGGTTGCCTGGCAGCAAAAGCTTATCGTGG
CGATCAGAAGAGACAGTCTGGAACAGAAGAAGACACTACGACAGGCTGAC
ATGGTGATTTCTGAGGCTTATTTACAATCATTGAAATCGCGGTCACGGCC
GAAGTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:458494..460350-

>Ggra1384.t1 ID=Ggra1384.t1|Name=Ggra1384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1857bp|location=Sequence derived from alignment at tig00000092_pilon:458494..460350- (Gracilaria gracilis GNS1m male)
ATGAATTACGCGCAGTACGTGAGTAGACGCCCGCCGTCTCCGCCTAGTCC
TCACCATCGCTACCGCTCGTTTGCGCCGTCTGCGTCGCTATCCTCCGCCG
CCTCCACCGTGTCATCGGAGACGCCGTTCACCCCGGCCTCCCGTCCGCCC
TTCCACACCGCCGAGGCCGTGTCCTCGCAGCTTCATCGCCGCGCCGTCCG
CGATGAATACGCCGCGTTGGCCGCCGTCGTGCTGGCCAACGTGCAGTTGG
ATCAACAAAGCGAGCGTCAAGAAGTCATCCGCATCCGACTGGAACACATG
ATCATCGAATCCGAGCCTGCCAACCATAGAGTGCTGACGCTCGCGCTCTC
CAAATGCACCGCCAGATTGGATCGCATCACACAACAATCTCGACAACTTG
AGCATGCGCGAACACGCATGCGTGTCATTGAGGCCAAGCACTTCCACGGC
ACCAATGCGCCGTCCGTGGAGCCTCGCCTCAGAGCGCTTCACATTCGACG
CGAGCACATCGTCACTTTGGTTGACCACATTCGCTGTACCTTACACGACC
AGGTGCGCATTCAGCACTTGCTCACCACGCTTGTTTCCAAACTGTCCGCC
TTGTATACACTGGTCACCCACTTGAACCGCGGTGCCACACAAAACGCATC
CGAACCTTCGGACCGGCCTGCTGCATATGTTCCGTCGCGCGCGCCGCGAG
TTAGCTCCTTCACGCACGATACCTCGCGACGCTCCTCCGCCGCTCGAAGG
GTTTCCATTAATCCGTTCGCTCATTCTTCCACTGACCAATCCAAGTCGTC
GACCAACGCGTGGCTTCGCACTGACCGGGCCCCCACCAGGGCAGATAGAA
GTAACACTCGTTCCGACCGACAAACCAACCGAGGACGAACTCTCCCCACG
CAACGCTCCTTGCCACAACGCGGGGGTGACAACCGTCGAATCCCATTTGT
CGTCAAGCGAGCTCTGTCATATAATGCTTCGGCCGTGCAGAACGTTTCCC
CTATAGCGTCCGAACCTCTGTGGGCAAATCGTTCTAGCAGCGTTCATGAA
CGGACGGCCGCGCAGAGTGAGCCTCGTTTACGCTTGAGCGAGACGTTCAA
GAGAAACAGAAAACTGTCAGCGTCTACAAAGAGCTCTGGCTCAATTGGTG
GCGCCGACGTGGACCCCATGTCAGAACCGCGTATATCCAGCATACGTAGT
ACGCACCACGACTTTGGAGACGCGGATAGACTGTCTGCGAGCCCGGTCAG
TCCGCACATGAAACCTTTTGACAACTGTTCTTTGGAAGAAAGCGTAATGC
AACAGGGCAATGATGCTCAGTTGGAGCGGGCGGTTCTCTTGGATATTGAC
TCTCTTTGCACCGAGGCTTCGTCGGTATTATCTTCTTCGCGGAGCACACA
TCAGGAGATGTCGGAGAAACGATCGTCATCATCGTTGTTTGGCAACGAGG
GTAGGAGAGGCATTGGGTTGAATAGGCTTGGGTTTCATCGCGTTCGAACA
TGGTCACAGATCCGGAAACTGTGGGCTGAGATTAATGAACTGTATGGTGT
GGTGATCACTCATGGCCCCCACTTGGTGGAGGAGAAGATCGTAAGTACAT
CTTCTGCTGAGCATGGTGTTTTGGGGGAATGGATCTCGCCACGAAAGGGA
AGGACGTCCGGCATCAAGGGCACGGTGCACAAGACGATTGTGGCTGAGGC
TGTGAGAAAAGTGGATGATGTGGTTGCCTGGCAGCAAAAGCTTATCGTGG
CGATCAGAAGAGACAGTCTGGAACAGAAGAAGACACTACGACAGGCTGAC
ATGGTGATTTCTGAGGCTTATTTACAATCATTGAAATCGCGGTCACGGCC
GAAGTGA