Ggra1383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1383.t1
Unique NameGgra1383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:456453..457649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1248232.BANQ01000099_gene1277
Preferred namehlyIII
PFAMsHlyIII
Max annot lvl135623|Vibrionales
KEGG koko:K11068
Evalue3.06e-34
EggNOG OGsCOG1272@1|root,COG1272@2|Bacteria,1PGRH@1224|Proteobacteria,1RR4R@1236|Gammaproteobacteria,1XT5P@135623|Vibrionales
Descriptionmembrane protein, hemolysin III
COG categoryS
BRITEko00000,ko02042
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1383Ggra1383Gracilaria gracilis GNS1m malegenetig00000092_pilon 456453..457649 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1383.t1.stop1Ggra1383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 456453..456455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1383.t1.CDS1Ggra1383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 456453..457649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1383.t1.exon1Ggra1383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 456453..457649 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1383.t1.start1Ggra1383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 457647..457649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1383.t1Ggra1383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 456453..457649 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1383.t1 ID=Ggra1383.t1|Name=Ggra1383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MQPYEHYAQLCTQRGHAPDVSLQHELRARATTLHLRSDSQLTLLEPLFKQ
CAAVTLAHVTQLVVLVSALSSRALSALLSVVQSHEQLTALSLAGVSLDVS
SFVAIFSALANAPRSRVSRLNLASTGLDRRAATAVAPFLSGQLSALLHLD
LSNNRANQRGVHIVHKYLALRDANLPPLHVDLSGNLVVVETLNALTHGVG
AVVSVFGAALMLRRAILLRTSVPILTSVVVFLFSLFTLLTSSCVYHSCFR
RPAASKCMRRADHCSIFLLIAGTYTPFVVRYTLQPLFLRGPITLFSVWSC
ALIGIYRSIRGLGTNRSRALFALLTGWLGSFSATTLVERMQRGALQLVFW
GGVVYSVGIVFYLLGKKRPMMHVIWHLAVLLGGGLHYVAIWEYVLGSS*
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spliced messenger RNA

>Ggra1383.t1 ID=Ggra1383.t1|Name=Ggra1383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000092_pilon:456453..457649- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGTACGAGCACTACGCGCAGCTCTGCACCCAGCGCGGCCACGC
GCCGGACGTCTCGCTCCAGCACGAGCTTCGCGCGCGAGCCACCACGCTTC
ACCTTCGTTCCGACTCGCAGCTAACGCTGCTGGAGCCGCTCTTCAAGCAG
TGCGCCGCCGTCACTCTCGCGCACGTTACACAGCTCGTGGTGCTTGTAAG
CGCCCTCTCAAGCCGCGCTCTCTCCGCCCTGTTATCGGTTGTGCAGTCGC
ACGAGCAACTCACTGCGCTCAGTCTAGCCGGTGTGTCGCTGGATGTGTCG
TCGTTCGTCGCGATTTTCTCCGCCTTGGCGAATGCGCCCCGTTCTCGAGT
CAGTCGCTTGAATCTGGCCTCCACCGGGCTTGATCGACGCGCTGCTACTG
CCGTCGCACCGTTTCTTTCCGGTCAGCTTTCTGCTTTGCTTCATTTAGAT
CTGTCCAACAACCGCGCAAATCAACGTGGCGTGCATATTGTCCACAAGTA
TTTGGCGCTACGGGATGCCAACCTGCCGCCGTTACACGTCGATCTTAGCG
GCAACCTGGTCGTCGTCGAGACGCTCAATGCGCTCACACATGGTGTGGGC
GCCGTAGTGTCTGTATTTGGCGCTGCGTTGATGCTGCGGCGCGCAATTTT
GTTGCGCACTTCTGTTCCGATACTCACTAGTGTTGTCGTCTTTCTATTTT
CCCTCTTCACTTTGCTCACGTCGAGTTGCGTGTATCACAGCTGTTTTCGA
CGCCCTGCGGCGTCAAAATGCATGCGTCGAGCCGATCATTGCTCCATCTT
CCTGCTTATCGCTGGTACCTACACGCCGTTTGTCGTGCGATATACCCTAC
AACCCCTGTTTTTACGTGGCCCTATCACCCTGTTTAGCGTGTGGAGTTGC
GCTCTTATCGGTATTTATCGCAGTATTCGCGGTTTGGGAACCAATCGTAG
CCGTGCACTTTTCGCGTTACTTACGGGTTGGTTGGGATCTTTCTCGGCGA
CCACGCTTGTTGAGAGGATGCAACGAGGCGCCTTGCAACTCGTTTTTTGG
GGAGGAGTTGTTTACTCCGTCGGTATTGTGTTTTACCTCCTGGGTAAGAA
GCGCCCTATGATGCACGTTATCTGGCATCTTGCTGTTCTGTTGGGCGGTG
GTTTGCACTACGTCGCTATATGGGAATATGTTCTAGGCTCCAGTTGA
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protein sequence of Ggra1383.t1

>Ggra1383.t1 ID=Ggra1383.t1|Name=Ggra1383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MQPYEHYAQLCTQRGHAPDVSLQHELRARATTLHLRSDSQLTLLEPLFKQ
CAAVTLAHVTQLVVLVSALSSRALSALLSVVQSHEQLTALSLAGVSLDVS
SFVAIFSALANAPRSRVSRLNLASTGLDRRAATAVAPFLSGQLSALLHLD
LSNNRANQRGVHIVHKYLALRDANLPPLHVDLSGNLVVVETLNALTHGVG
AVVSVFGAALMLRRAILLRTSVPILTSVVVFLFSLFTLLTSSCVYHSCFR
RPAASKCMRRADHCSIFLLIAGTYTPFVVRYTLQPLFLRGPITLFSVWSC
ALIGIYRSIRGLGTNRSRALFALLTGWLGSFSATTLVERMQRGALQLVFW
GGVVYSVGIVFYLLGKKRPMMHVIWHLAVLLGGGLHYVAIWEYVLGSS*
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mRNA from alignment at tig00000092_pilon:456453..457649-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1383.t1 ID=Ggra1383.t1|Name=Ggra1383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000092_pilon:456453..457649- (Gracilaria gracilis GNS1m male)
ATGCAGCCGTACGAGCACTACGCGCAGCTCTGCACCCAGCGCGGCCACGC
GCCGGACGTCTCGCTCCAGCACGAGCTTCGCGCGCGAGCCACCACGCTTC
ACCTTCGTTCCGACTCGCAGCTAACGCTGCTGGAGCCGCTCTTCAAGCAG
TGCGCCGCCGTCACTCTCGCGCACGTTACACAGCTCGTGGTGCTTGTAAG
CGCCCTCTCAAGCCGCGCTCTCTCCGCCCTGTTATCGGTTGTGCAGTCGC
ACGAGCAACTCACTGCGCTCAGTCTAGCCGGTGTGTCGCTGGATGTGTCG
TCGTTCGTCGCGATTTTCTCCGCCTTGGCGAATGCGCCCCGTTCTCGAGT
CAGTCGCTTGAATCTGGCCTCCACCGGGCTTGATCGACGCGCTGCTACTG
CCGTCGCACCGTTTCTTTCCGGTCAGCTTTCTGCTTTGCTTCATTTAGAT
CTGTCCAACAACCGCGCAAATCAACGTGGCGTGCATATTGTCCACAAGTA
TTTGGCGCTACGGGATGCCAACCTGCCGCCGTTACACGTCGATCTTAGCG
GCAACCTGGTCGTCGTCGAGACGCTCAATGCGCTCACACATGGTGTGGGC
GCCGTAGTGTCTGTATTTGGCGCTGCGTTGATGCTGCGGCGCGCAATTTT
GTTGCGCACTTCTGTTCCGATACTCACTAGTGTTGTCGTCTTTCTATTTT
CCCTCTTCACTTTGCTCACGTCGAGTTGCGTGTATCACAGCTGTTTTCGA
CGCCCTGCGGCGTCAAAATGCATGCGTCGAGCCGATCATTGCTCCATCTT
CCTGCTTATCGCTGGTACCTACACGCCGTTTGTCGTGCGATATACCCTAC
AACCCCTGTTTTTACGTGGCCCTATCACCCTGTTTAGCGTGTGGAGTTGC
GCTCTTATCGGTATTTATCGCAGTATTCGCGGTTTGGGAACCAATCGTAG
CCGTGCACTTTTCGCGTTACTTACGGGTTGGTTGGGATCTTTCTCGGCGA
CCACGCTTGTTGAGAGGATGCAACGAGGCGCCTTGCAACTCGTTTTTTGG
GGAGGAGTTGTTTACTCCGTCGGTATTGTGTTTTACCTCCTGGGTAAGAA
GCGCCCTATGATGCACGTTATCTGGCATCTTGCTGTTCTGTTGGGCGGTG
GTTTGCACTACGTCGCTATATGGGAATATGTTCTAGGCTCCAGTTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:456453..457649-

>Ggra1383.t1 ID=Ggra1383.t1|Name=Ggra1383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000092_pilon:456453..457649- (Gracilaria gracilis GNS1m male)
ATGCAGCCGTACGAGCACTACGCGCAGCTCTGCACCCAGCGCGGCCACGC
GCCGGACGTCTCGCTCCAGCACGAGCTTCGCGCGCGAGCCACCACGCTTC
ACCTTCGTTCCGACTCGCAGCTAACGCTGCTGGAGCCGCTCTTCAAGCAG
TGCGCCGCCGTCACTCTCGCGCACGTTACACAGCTCGTGGTGCTTGTAAG
CGCCCTCTCAAGCCGCGCTCTCTCCGCCCTGTTATCGGTTGTGCAGTCGC
ACGAGCAACTCACTGCGCTCAGTCTAGCCGGTGTGTCGCTGGATGTGTCG
TCGTTCGTCGCGATTTTCTCCGCCTTGGCGAATGCGCCCCGTTCTCGAGT
CAGTCGCTTGAATCTGGCCTCCACCGGGCTTGATCGACGCGCTGCTACTG
CCGTCGCACCGTTTCTTTCCGGTCAGCTTTCTGCTTTGCTTCATTTAGAT
CTGTCCAACAACCGCGCAAATCAACGTGGCGTGCATATTGTCCACAAGTA
TTTGGCGCTACGGGATGCCAACCTGCCGCCGTTACACGTCGATCTTAGCG
GCAACCTGGTCGTCGTCGAGACGCTCAATGCGCTCACACATGGTGTGGGC
GCCGTAGTGTCTGTATTTGGCGCTGCGTTGATGCTGCGGCGCGCAATTTT
GTTGCGCACTTCTGTTCCGATACTCACTAGTGTTGTCGTCTTTCTATTTT
CCCTCTTCACTTTGCTCACGTCGAGTTGCGTGTATCACAGCTGTTTTCGA
CGCCCTGCGGCGTCAAAATGCATGCGTCGAGCCGATCATTGCTCCATCTT
CCTGCTTATCGCTGGTACCTACACGCCGTTTGTCGTGCGATATACCCTAC
AACCCCTGTTTTTACGTGGCCCTATCACCCTGTTTAGCGTGTGGAGTTGC
GCTCTTATCGGTATTTATCGCAGTATTCGCGGTTTGGGAACCAATCGTAG
CCGTGCACTTTTCGCGTTACTTACGGGTTGGTTGGGATCTTTCTCGGCGA
CCACGCTTGTTGAGAGGATGCAACGAGGCGCCTTGCAACTCGTTTTTTGG
GGAGGAGTTGTTTACTCCGTCGGTATTGTGTTTTACCTCCTGGGTAAGAA
GCGCCCTATGATGCACGTTATCTGGCATCTTGCTGTTCTGTTGGGCGGTG
GTTTGCACTACGTCGCTATATGGGAATATGTTCTAGGCTCCAGTTGA
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