Ggra1382.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1382.t1
Unique NameGgra1382.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:454404..455045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1382Ggra1382Gracilaria gracilis GNS1m malegenetig00000092_pilon 454404..455045 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1382.t1.stop1Ggra1382.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 454404..454406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1382.t1.CDS1Ggra1382.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 454404..455045 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1382.t1.exon1Ggra1382.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 454404..455045 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1382.t1.start1Ggra1382.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 455043..455045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1382.t1Ggra1382.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 454404..455045 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1382.t1 ID=Ggra1382.t1|Name=Ggra1382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MATIKWGKETYKTGVDRFTVREGHHGWEKWEKQAWNALVTYKDGTTGVTH
TFCHWDLASKTGTTTNKFDSEASFISRLTGNQQKPTGAVFVRFVIGGEKC
ASPKGDPEKGDGDNSKVDDSEKVSGSSDDDGSSGFCACKLTERRGGDCYE
MEEPNAVSGRCTQRPCQPSFECVASSEQVCVKRIGGIKLVMVAPNFCKTI
TADDMETLMPYEG*
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spliced messenger RNA

>Ggra1382.t1 ID=Ggra1382.t1|Name=Ggra1382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000092_pilon:454404..455045- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTATCAAGTGGGGAAAGGAAACTTATAAAACTGGAGTTGATCG
TTTCACCGTCCGCGAAGGTCATCACGGATGGGAGAAGTGGGAGAAACAAG
CATGGAATGCTCTTGTTACATACAAAGATGGGACAACCGGCGTTACACAT
ACTTTTTGCCACTGGGACTTAGCAAGCAAGACGGGCACTACAACAAACAA
GTTTGACAGCGAAGCGTCCTTCATTTCAAGGCTTACTGGAAATCAGCAGA
AACCAACTGGTGCCGTCTTCGTCCGCTTTGTGATTGGGGGCGAGAAATGT
GCTTCGCCAAAGGGTGATCCAGAGAAGGGTGATGGTGACAACTCCAAAGT
GGATGATTCGGAGAAAGTAAGCGGGAGCAGTGATGATGACGGGTCTAGCG
GCTTCTGTGCTTGCAAACTTACTGAAAGAAGAGGCGGTGACTGCTACGAG
ATGGAGGAACCCAACGCAGTTTCTGGAAGATGCACACAGCGCCCTTGCCA
GCCAAGTTTTGAGTGTGTTGCTTCGAGTGAACAAGTATGTGTCAAACGAA
TTGGTGGGATAAAATTGGTTATGGTAGCTCCCAACTTTTGCAAGACTATA
ACTGCTGATGACATGGAGACACTGATGCCATATGAGGGCTAG
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protein sequence of Ggra1382.t1

>Ggra1382.t1 ID=Ggra1382.t1|Name=Ggra1382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MATIKWGKETYKTGVDRFTVREGHHGWEKWEKQAWNALVTYKDGTTGVTH
TFCHWDLASKTGTTTNKFDSEASFISRLTGNQQKPTGAVFVRFVIGGEKC
ASPKGDPEKGDGDNSKVDDSEKVSGSSDDDGSSGFCACKLTERRGGDCYE
MEEPNAVSGRCTQRPCQPSFECVASSEQVCVKRIGGIKLVMVAPNFCKTI
TADDMETLMPYEG*
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mRNA from alignment at tig00000092_pilon:454404..455045-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1382.t1 ID=Ggra1382.t1|Name=Ggra1382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000092_pilon:454404..455045- (Gracilaria gracilis GNS1m male)
ATGGCAACTATCAAGTGGGGAAAGGAAACTTATAAAACTGGAGTTGATCG
TTTCACCGTCCGCGAAGGTCATCACGGATGGGAGAAGTGGGAGAAACAAG
CATGGAATGCTCTTGTTACATACAAAGATGGGACAACCGGCGTTACACAT
ACTTTTTGCCACTGGGACTTAGCAAGCAAGACGGGCACTACAACAAACAA
GTTTGACAGCGAAGCGTCCTTCATTTCAAGGCTTACTGGAAATCAGCAGA
AACCAACTGGTGCCGTCTTCGTCCGCTTTGTGATTGGGGGCGAGAAATGT
GCTTCGCCAAAGGGTGATCCAGAGAAGGGTGATGGTGACAACTCCAAAGT
GGATGATTCGGAGAAAGTAAGCGGGAGCAGTGATGATGACGGGTCTAGCG
GCTTCTGTGCTTGCAAACTTACTGAAAGAAGAGGCGGTGACTGCTACGAG
ATGGAGGAACCCAACGCAGTTTCTGGAAGATGCACACAGCGCCCTTGCCA
GCCAAGTTTTGAGTGTGTTGCTTCGAGTGAACAAGTATGTGTCAAACGAA
TTGGTGGGATAAAATTGGTTATGGTAGCTCCCAACTTTTGCAAGACTATA
ACTGCTGATGACATGGAGACACTGATGCCATATGAGGGCTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:454404..455045-

>Ggra1382.t1 ID=Ggra1382.t1|Name=Ggra1382.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000092_pilon:454404..455045- (Gracilaria gracilis GNS1m male)
ATGGCAACTATCAAGTGGGGAAAGGAAACTTATAAAACTGGAGTTGATCG
TTTCACCGTCCGCGAAGGTCATCACGGATGGGAGAAGTGGGAGAAACAAG
CATGGAATGCTCTTGTTACATACAAAGATGGGACAACCGGCGTTACACAT
ACTTTTTGCCACTGGGACTTAGCAAGCAAGACGGGCACTACAACAAACAA
GTTTGACAGCGAAGCGTCCTTCATTTCAAGGCTTACTGGAAATCAGCAGA
AACCAACTGGTGCCGTCTTCGTCCGCTTTGTGATTGGGGGCGAGAAATGT
GCTTCGCCAAAGGGTGATCCAGAGAAGGGTGATGGTGACAACTCCAAAGT
GGATGATTCGGAGAAAGTAAGCGGGAGCAGTGATGATGACGGGTCTAGCG
GCTTCTGTGCTTGCAAACTTACTGAAAGAAGAGGCGGTGACTGCTACGAG
ATGGAGGAACCCAACGCAGTTTCTGGAAGATGCACACAGCGCCCTTGCCA
GCCAAGTTTTGAGTGTGTTGCTTCGAGTGAACAAGTATGTGTCAAACGAA
TTGGTGGGATAAAATTGGTTATGGTAGCTCCCAACTTTTGCAAGACTATA
ACTGCTGATGACATGGAGACACTGATGCCATATGAGGGCTAG
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