Ggra1381.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1381.t1
Unique Name	Ggra1381.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:453025..453606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT031CT
Preferred name	NT5M
PFAMs	NT5C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01081
KEGG Reaction	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathway	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006213,GO:0006220,GO:0006244,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009123,GO:0009125,GO:0009129,GO:0009131,GO:0009159,GO:0009162,GO:0009164,GO:0009166,GO:0009176,GO:0009178,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046078,GO:0046079,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
Evalue	2.52e-66
EggNOG OGs	COG4502@1\|root,2QPWJ@2759\|Eukaryota
EC	3.1.3.5
Description	pyrimidine deoxyribonucleoside monophosphate catabolic process
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1381	Ggra1381	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 453025..453606 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1381.t1.start1	Ggra1381.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 453025..453027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1381.t1.CDS1	Ggra1381.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 453025..453606 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1381.t1.exon1	Ggra1381.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 453025..453606 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1381.t1.stop1	Ggra1381.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 453604..453606 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1381.t1	Ggra1381.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 453025..453606 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:453025..453606+
coding sequence from alignment at tig00000092_pilon:453025..453606+

mRNA sequence

>Ggra1381.t1 ID=Ggra1381.t1|Name=Ggra1381.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MTEMKNVVLVDMDNTLVNWDKEFAKRWAALRPDDSPDIIKHRKHFELEQN
FNQDLMPVAIGIMSTPGFFAALEPQPGAIGAIREMSDAGLHVMLCTAPHP
LQYETCVAEKYGWVRKWLGEDYLSRILITRDKTIVKGRVLIDDKPAVKGK
CEDPDWEHVVFEQPYNLGVEDRPRMKTWAEWKPVLSNFFEMKH*

spliced messenger RNA

>Ggra1381.t1 ID=Ggra1381.t1|Name=Ggra1381.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000092_pilon:453025..453606+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAAATGAAAAACGTGGTCCTCGTTGACATGGACAACACATTGGT
GAATTGGGATAAAGAGTTTGCGAAACGATGGGCAGCTTTGAGACCAGATG
ACTCCCCAGATATAATCAAACACCGAAAACACTTCGAACTGGAGCAGAAT
TTCAATCAAGATCTCATGCCAGTTGCCATTGGCATAATGTCTACACCAGG
ATTCTTCGCAGCCTTAGAACCACAACCAGGCGCCATTGGGGCCATTCGCG
AAATGTCTGATGCTGGTCTGCATGTGATGTTGTGCACAGCACCGCACCCA
TTGCAGTACGAAACATGTGTCGCAGAAAAATATGGATGGGTTAGAAAATG
GTTAGGTGAGGATTACTTATCTAGAATTTTGATTACTCGGGATAAGACGA
TTGTTAAGGGAAGAGTGCTCATAGATGACAAACCGGCTGTAAAAGGAAAA
TGTGAAGACCCAGACTGGGAACACGTTGTCTTCGAACAACCATACAACTT
GGGCGTCGAAGATAGACCAAGAATGAAGACCTGGGCCGAGTGGAAGCCAG
TACTCAGCAATTTCTTCGAAATGAAACACTGA

protein sequence of Ggra1381.t1

>Ggra1381.t1 ID=Ggra1381.t1|Name=Ggra1381.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MTEMKNVVLVDMDNTLVNWDKEFAKRWAALRPDDSPDIIKHRKHFELEQN
FNQDLMPVAIGIMSTPGFFAALEPQPGAIGAIREMSDAGLHVMLCTAPHP
LQYETCVAEKYGWVRKWLGEDYLSRILITRDKTIVKGRVLIDDKPAVKGK
CEDPDWEHVVFEQPYNLGVEDRPRMKTWAEWKPVLSNFFEMKH*

mRNA from alignment at tig00000092_pilon:453025..453606+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1381.t1 ID=Ggra1381.t1|Name=Ggra1381.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000092_pilon:453025..453606+ (Gracilaria gracilis GNS1m male)
ATGACGGAAATGAAAAACGTGGTCCTCGTTGACATGGACAACACATTGGT
GAATTGGGATAAAGAGTTTGCGAAACGATGGGCAGCTTTGAGACCAGATG
ACTCCCCAGATATAATCAAACACCGAAAACACTTCGAACTGGAGCAGAAT
TTCAATCAAGATCTCATGCCAGTTGCCATTGGCATAATGTCTACACCAGG
ATTCTTCGCAGCCTTAGAACCACAACCAGGCGCCATTGGGGCCATTCGCG
AAATGTCTGATGCTGGTCTGCATGTGATGTTGTGCACAGCACCGCACCCA
TTGCAGTACGAAACATGTGTCGCAGAAAAATATGGATGGGTTAGAAAATG
GTTAGGTGAGGATTACTTATCTAGAATTTTGATTACTCGGGATAAGACGA
TTGTTAAGGGAAGAGTGCTCATAGATGACAAACCGGCTGTAAAAGGAAAA
TGTGAAGACCCAGACTGGGAACACGTTGTCTTCGAACAACCATACAACTT
GGGCGTCGAAGATAGACCAAGAATGAAGACCTGGGCCGAGTGGAAGCCAG
TACTCAGCAATTTCTTCGAAATGAAACACTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:453025..453606+

>Ggra1381.t1 ID=Ggra1381.t1|Name=Ggra1381.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000092_pilon:453025..453606+ (Gracilaria gracilis GNS1m male)
ATGACGGAAATGAAAAACGTGGTCCTCGTTGACATGGACAACACATTGGT
GAATTGGGATAAAGAGTTTGCGAAACGATGGGCAGCTTTGAGACCAGATG
ACTCCCCAGATATAATCAAACACCGAAAACACTTCGAACTGGAGCAGAAT
TTCAATCAAGATCTCATGCCAGTTGCCATTGGCATAATGTCTACACCAGG
ATTCTTCGCAGCCTTAGAACCACAACCAGGCGCCATTGGGGCCATTCGCG
AAATGTCTGATGCTGGTCTGCATGTGATGTTGTGCACAGCACCGCACCCA
TTGCAGTACGAAACATGTGTCGCAGAAAAATATGGATGGGTTAGAAAATG
GTTAGGTGAGGATTACTTATCTAGAATTTTGATTACTCGGGATAAGACGA
TTGTTAAGGGAAGAGTGCTCATAGATGACAAACCGGCTGTAAAAGGAAAA
TGTGAAGACCCAGACTGGGAACACGTTGTCTTCGAACAACCATACAACTT
GGGCGTCGAAGATAGACCAAGAATGAAGACCTGGGCCGAGTGGAAGCCAG
TACTCAGCAATTTCTTCGAAATGAAACACTGA