Ggra1380.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1380.t1
Unique NameGgra1380.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:447586..448632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1380Ggra1380Gracilaria gracilis GNS1m malegenetig00000092_pilon 447586..448632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1380.t1Ggra1380.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 447586..448632 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1380.t1.stop1Ggra1380.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 447586..447588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1380.t1.CDS1Ggra1380.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 447586..448243 -
Ggra1380.t1.CDS2Ggra1380.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 448430..448632 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1380.t1.exon1Ggra1380.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 447586..448243 -
Ggra1380.t1.exon2Ggra1380.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 448430..448632 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1380.t1.intron1Ggra1380.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 448244..448429 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1380.t1.start1Ggra1380.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 448630..448632 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1380.t1 ID=Ggra1380.t1|Name=Ggra1380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MKVFVGRFSLILAIIFTTVQARAFWGVSYGNSLGNGFGSMLSLRPSTRVQ
GSKMSTIMFSATDSEATIGDYSKWEVGEQLGWNKVVKYEPRTKGTTRTFC
HWDRADKTGIESGRFDKSASFVWRLTSEDGKDNVPVDTTYLRLVIGGEDC
GVDPQKGNGKPTKNDSDDEKNDGNASSHRVPKQKEAGSQSGSSSGISGQS
DVAATEGFCACRYTESKGGECFDMEDPTANSGKCKPRPCESKFECAATGD
KICVKRRGGMKVIRVSPNNCINVFADDSESLIPYEG*
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spliced messenger RNA

>Ggra1380.t1 ID=Ggra1380.t1|Name=Ggra1380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000092_pilon:447586..448632- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTATTCGTCGGTCGTTTTTCCCTTATCCTTGCCATCATCTTCAC
TACGGTGCAAGCTCGAGCTTTTTGGGGCGTTTCATATGGAAATAGTCTTG
GAAACGGATTCGGGTCCATGCTTTCATTGCGCCCTTCTACTAGGGTCCAA
GGCAGCAAGATGTCAACAATTATGTTTTCTGCGACGGACAGTGAAGCTAC
TATAGGAGACTATTCCAAGTGGGAGGTCGGAGAGCAACTGGGATGGAACA
AGGTTGTGAAATATGAGCCTAGGACTAAGGGAACCACTCGCACTTTCTGT
CACTGGGACCGGGCAGATAAGACAGGAATTGAGAGTGGCAGGTTCGATAA
ATCGGCGTCGTTCGTGTGGAGATTAACATCAGAAGACGGAAAGGATAACG
TTCCAGTAGATACCACTTACTTGCGCCTTGTAATTGGGGGAGAAGACTGT
GGGGTGGATCCACAGAAAGGAAACGGTAAGCCTACCAAGAATGATAGCGA
CGACGAGAAGAATGATGGAAACGCATCCTCTCATCGCGTGCCTAAACAAA
AAGAAGCCGGGTCTCAATCAGGCTCGTCGTCTGGTATCAGCGGACAAAGC
GACGTTGCTGCCACTGAAGGATTCTGCGCCTGTCGGTACACCGAATCCAA
AGGTGGAGAATGTTTCGATATGGAAGATCCAACTGCCAACTCAGGAAAAT
GCAAGCCTCGCCCATGTGAGTCTAAGTTCGAATGTGCCGCTACAGGAGAC
AAAATCTGCGTGAAACGTCGGGGAGGAATGAAGGTGATTAGGGTATCACC
GAATAACTGCATCAACGTTTTTGCGGACGACAGCGAGAGTCTAATCCCAT
ATGAGGGATAG
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protein sequence of Ggra1380.t1

>Ggra1380.t1 ID=Ggra1380.t1|Name=Ggra1380.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MKVFVGRFSLILAIIFTTVQARAFWGVSYGNSLGNGFGSMLSLRPSTRVQ
GSKMSTIMFSATDSEATIGDYSKWEVGEQLGWNKVVKYEPRTKGTTRTFC
HWDRADKTGIESGRFDKSASFVWRLTSEDGKDNVPVDTTYLRLVIGGEDC
GVDPQKGNGKPTKNDSDDEKNDGNASSHRVPKQKEAGSQSGSSSGISGQS
DVAATEGFCACRYTESKGGECFDMEDPTANSGKCKPRPCESKFECAATGD
KICVKRRGGMKVIRVSPNNCINVFADDSESLIPYEG*
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mRNA from alignment at tig00000092_pilon:447586..448632-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1380.t1 ID=Ggra1380.t1|Name=Ggra1380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000092_pilon:447586..448632- (Gracilaria gracilis GNS1m male)
ATGAAGGTATTCGTCGGTCGTTTTTCCCTTATCCTTGCCATCATCTTCAC
TACGGTGCAAGCTCGAGCTTTTTGGGGCGTTTCATATGGAAATAGTCTTG
GAAACGGATTCGGGTCCATGCTTTCATTGCGCCCTTCTACTAGGGTCCAA
GGCAGCAAGATGTCAACAATTATGTTTTCTGCGACGGACAGTGAAGCTAC
TATGTACGTGAATGGAAAACAATACAACAAAGCCACATCCACTACTCCGG
TGGTTGTTCATCTGCAACTCGAAAAGGACGATTTGGTGGCGTTCAAGGCA
GAGAAGACTGGCCCGAAGGCTGGTTTCATGGCAACTATTTCATGGGGCTC
AAAGACGTATGTTACTGGTAAAGATCGTTTCACGGCCAGAGGAGACTATT
CCAAGTGGGAGGTCGGAGAGCAACTGGGATGGAACAAGGTTGTGAAATAT
GAGCCTAGGACTAAGGGAACCACTCGCACTTTCTGTCACTGGGACCGGGC
AGATAAGACAGGAATTGAGAGTGGCAGGTTCGATAAATCGGCGTCGTTCG
TGTGGAGATTAACATCAGAAGACGGAAAGGATAACGTTCCAGTAGATACC
ACTTACTTGCGCCTTGTAATTGGGGGAGAAGACTGTGGGGTGGATCCACA
GAAAGGAAACGGTAAGCCTACCAAGAATGATAGCGACGACGAGAAGAATG
ATGGAAACGCATCCTCTCATCGCGTGCCTAAACAAAAAGAAGCCGGGTCT
CAATCAGGCTCGTCGTCTGGTATCAGCGGACAAAGCGACGTTGCTGCCAC
TGAAGGATTCTGCGCCTGTCGGTACACCGAATCCAAAGGTGGAGAATGTT
TCGATATGGAAGATCCAACTGCCAACTCAGGAAAATGCAAGCCTCGCCCA
TGTGAGTCTAAGTTCGAATGTGCCGCTACAGGAGACAAAATCTGCGTGAA
ACGTCGGGGAGGAATGAAGGTGATTAGGGTATCACCGAATAACTGCATCA
ACGTTTTTGCGGACGACAGCGAGAGTCTAATCCCATATGAGGGATAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:447586..448632-

>Ggra1380.t1 ID=Ggra1380.t1|Name=Ggra1380.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000092_pilon:447586..448632- (Gracilaria gracilis GNS1m male)
ATGAAGGTATTCGTCGGTCGTTTTTCCCTTATCCTTGCCATCATCTTCAC
TACGGTGCAAGCTCGAGCTTTTTGGGGCGTTTCATATGGAAATAGTCTTG
GAAACGGATTCGGGTCCATGCTTTCATTGCGCCCTTCTACTAGGGTCCAA
GGCAGCAAGATGTCAACAATTATGTTTTCTGCGACGGACAGTGAAGCTAC
TATAGGAGACTATTCCAAGTGGGAGGTCGGAGAGCAACTGGGATGGAACA
AGGTTGTGAAATATGAGCCTAGGACTAAGGGAACCACTCGCACTTTCTGT
CACTGGGACCGGGCAGATAAGACAGGAATTGAGAGTGGCAGGTTCGATAA
ATCGGCGTCGTTCGTGTGGAGATTAACATCAGAAGACGGAAAGGATAACG
TTCCAGTAGATACCACTTACTTGCGCCTTGTAATTGGGGGAGAAGACTGT
GGGGTGGATCCACAGAAAGGAAACGGTAAGCCTACCAAGAATGATAGCGA
CGACGAGAAGAATGATGGAAACGCATCCTCTCATCGCGTGCCTAAACAAA
AAGAAGCCGGGTCTCAATCAGGCTCGTCGTCTGGTATCAGCGGACAAAGC
GACGTTGCTGCCACTGAAGGATTCTGCGCCTGTCGGTACACCGAATCCAA
AGGTGGAGAATGTTTCGATATGGAAGATCCAACTGCCAACTCAGGAAAAT
GCAAGCCTCGCCCATGTGAGTCTAAGTTCGAATGTGCCGCTACAGGAGAC
AAAATCTGCGTGAAACGTCGGGGAGGAATGAAGGTGATTAGGGTATCACC
GAATAACTGCATCAACGTTTTTGCGGACGACAGCGAGAGTCTAATCCCAT
ATGAGGGATAG
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