Ggra1379.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1379.t1
Unique NameGgra1379.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:445410..446804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI38250
PFAMsWD40
Max annot lvl4776|Peronosporales
KEGG koko:K14793
Evalue2.49e-61
EggNOG OGsKOG0299@1|root,KOG0299@2759|Eukaryota,3Q8T7@4776|Peronosporales
DescriptionWD domain, G-beta repeat
COG categoryA
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1379Ggra1379Gracilaria gracilis GNS1m malegenetig00000092_pilon 445410..446804 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1379.t1.stop1Ggra1379.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 445410..445412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1379.t1.CDS1Ggra1379.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 445410..446804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1379.t1.exon1Ggra1379.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 445410..446804 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1379.t1.start1Ggra1379.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 446802..446804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1379.t1Ggra1379.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 445410..446804 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1379.t1 ID=Ggra1379.t1|Name=Ggra1379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MVGKLATKKRARPATDRRNQAPDAKRKQPEKDEEILSDEVDSDPEIDRSS
VESSDESDHENETVEQKRLRLARAYLRHVGVSEDAAVSDDGDDSKSDQLG
ASNKLLREQALRDQAKSFTHIADRFSSSISSLKINKCKGHVLSPTCVALC
SLDDATAVSGGKDARLIVWDVETGKRRHVFKPIIDQAKKKNPAAAKGHVG
NILAVAITEDGSTAVSGGKDGLIRVWDVRAGSLIETLRGHRDAVTGLTFR
SGSRQLFSASADRTVKIWDINEMAYVETLFGHGGDVNAISSMSMERALSC
GRDGTLRLYKVVEGSQLVFRNANTISLDTVSMVSEHRFVSGGDDGTVCLW
QMNKKKPLSTIEHAHGSGLGCENWISSVSAFRNTDLAVSGAGDGMLRFWK
CEDVPKLQPAGSLNVGPGFVNGIAIGHQHRLLATAVGTEHRFGRWASIKK
AKNTVQFISLPNFD*
back to top

spliced messenger RNA

>Ggra1379.t1 ID=Ggra1379.t1|Name=Ggra1379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000092_pilon:445410..446804- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGCAAGCTCGCGACGAAAAAGCGAGCAAGGCCTGCGACGGACCG
TAGAAATCAGGCCCCGGATGCAAAGCGGAAACAGCCTGAGAAAGACGAAG
AAATCTTGTCGGATGAAGTGGATAGCGATCCAGAAATCGATAGAAGCTCA
GTCGAGTCGTCTGATGAATCGGACCATGAAAACGAAACGGTGGAACAAAA
AAGGCTTCGTTTGGCCCGCGCGTACCTTCGCCATGTTGGAGTCTCTGAAG
ATGCTGCAGTTTCGGACGATGGGGATGATTCAAAAAGTGACCAGCTTGGG
GCCAGCAACAAGTTGCTGCGAGAACAAGCTTTGAGAGACCAAGCCAAGTC
TTTCACGCATATTGCTGACCGGTTTTCCTCATCGATCAGCAGCCTTAAGA
TTAACAAGTGCAAAGGTCACGTTCTATCTCCAACATGCGTCGCATTGTGC
TCTCTTGACGATGCAACCGCTGTGTCTGGTGGGAAGGATGCCAGACTGAT
TGTCTGGGATGTCGAGACCGGGAAACGTCGACATGTTTTTAAACCAATCA
TTGACCAAGCAAAGAAGAAGAATCCTGCCGCTGCGAAAGGCCATGTCGGG
AATATATTAGCTGTAGCAATTACCGAGGATGGAAGTACGGCGGTATCCGG
CGGTAAAGACGGTCTAATTCGCGTTTGGGACGTTCGTGCCGGAAGTTTAA
TAGAGACGTTGCGTGGCCATAGAGATGCAGTGACTGGACTCACCTTTCGA
TCAGGCTCACGACAGTTGTTCTCAGCCTCAGCTGACCGTACTGTCAAAAT
ATGGGATATCAACGAAATGGCCTATGTGGAAACTCTGTTCGGGCATGGAG
GTGACGTGAATGCCATCAGTTCTATGTCAATGGAGCGCGCATTGTCTTGT
GGTAGGGACGGCACTCTACGGTTGTACAAAGTAGTAGAGGGATCGCAACT
TGTATTTCGCAATGCGAACACAATTTCACTGGATACCGTTTCTATGGTTA
GCGAGCATCGTTTCGTTTCTGGGGGGGATGACGGAACTGTTTGCTTGTGG
CAGATGAATAAGAAGAAGCCCTTATCCACTATCGAACATGCCCACGGTTC
AGGTCTTGGTTGTGAGAATTGGATTTCCTCCGTATCTGCTTTTCGAAACA
CAGACCTGGCCGTATCTGGAGCTGGCGATGGTATGCTTCGTTTCTGGAAA
TGTGAAGATGTCCCGAAGTTACAGCCGGCTGGGAGCTTAAATGTTGGTCC
TGGGTTTGTTAATGGAATTGCAATTGGCCATCAACATCGACTCCTGGCTA
CTGCGGTTGGTACAGAGCATAGATTCGGACGATGGGCATCGATCAAGAAG
GCAAAGAACACGGTGCAGTTCATTTCTTTACCAAACTTTGACTGA
back to top

protein sequence of Ggra1379.t1

>Ggra1379.t1 ID=Ggra1379.t1|Name=Ggra1379.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MVGKLATKKRARPATDRRNQAPDAKRKQPEKDEEILSDEVDSDPEIDRSS
VESSDESDHENETVEQKRLRLARAYLRHVGVSEDAAVSDDGDDSKSDQLG
ASNKLLREQALRDQAKSFTHIADRFSSSISSLKINKCKGHVLSPTCVALC
SLDDATAVSGGKDARLIVWDVETGKRRHVFKPIIDQAKKKNPAAAKGHVG
NILAVAITEDGSTAVSGGKDGLIRVWDVRAGSLIETLRGHRDAVTGLTFR
SGSRQLFSASADRTVKIWDINEMAYVETLFGHGGDVNAISSMSMERALSC
GRDGTLRLYKVVEGSQLVFRNANTISLDTVSMVSEHRFVSGGDDGTVCLW
QMNKKKPLSTIEHAHGSGLGCENWISSVSAFRNTDLAVSGAGDGMLRFWK
CEDVPKLQPAGSLNVGPGFVNGIAIGHQHRLLATAVGTEHRFGRWASIKK
AKNTVQFISLPNFD*
back to top

mRNA from alignment at tig00000092_pilon:445410..446804-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1379.t1 ID=Ggra1379.t1|Name=Ggra1379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000092_pilon:445410..446804- (Gracilaria gracilis GNS1m male)
ATGGTAGGCAAGCTCGCGACGAAAAAGCGAGCAAGGCCTGCGACGGACCG
TAGAAATCAGGCCCCGGATGCAAAGCGGAAACAGCCTGAGAAAGACGAAG
AAATCTTGTCGGATGAAGTGGATAGCGATCCAGAAATCGATAGAAGCTCA
GTCGAGTCGTCTGATGAATCGGACCATGAAAACGAAACGGTGGAACAAAA
AAGGCTTCGTTTGGCCCGCGCGTACCTTCGCCATGTTGGAGTCTCTGAAG
ATGCTGCAGTTTCGGACGATGGGGATGATTCAAAAAGTGACCAGCTTGGG
GCCAGCAACAAGTTGCTGCGAGAACAAGCTTTGAGAGACCAAGCCAAGTC
TTTCACGCATATTGCTGACCGGTTTTCCTCATCGATCAGCAGCCTTAAGA
TTAACAAGTGCAAAGGTCACGTTCTATCTCCAACATGCGTCGCATTGTGC
TCTCTTGACGATGCAACCGCTGTGTCTGGTGGGAAGGATGCCAGACTGAT
TGTCTGGGATGTCGAGACCGGGAAACGTCGACATGTTTTTAAACCAATCA
TTGACCAAGCAAAGAAGAAGAATCCTGCCGCTGCGAAAGGCCATGTCGGG
AATATATTAGCTGTAGCAATTACCGAGGATGGAAGTACGGCGGTATCCGG
CGGTAAAGACGGTCTAATTCGCGTTTGGGACGTTCGTGCCGGAAGTTTAA
TAGAGACGTTGCGTGGCCATAGAGATGCAGTGACTGGACTCACCTTTCGA
TCAGGCTCACGACAGTTGTTCTCAGCCTCAGCTGACCGTACTGTCAAAAT
ATGGGATATCAACGAAATGGCCTATGTGGAAACTCTGTTCGGGCATGGAG
GTGACGTGAATGCCATCAGTTCTATGTCAATGGAGCGCGCATTGTCTTGT
GGTAGGGACGGCACTCTACGGTTGTACAAAGTAGTAGAGGGATCGCAACT
TGTATTTCGCAATGCGAACACAATTTCACTGGATACCGTTTCTATGGTTA
GCGAGCATCGTTTCGTTTCTGGGGGGGATGACGGAACTGTTTGCTTGTGG
CAGATGAATAAGAAGAAGCCCTTATCCACTATCGAACATGCCCACGGTTC
AGGTCTTGGTTGTGAGAATTGGATTTCCTCCGTATCTGCTTTTCGAAACA
CAGACCTGGCCGTATCTGGAGCTGGCGATGGTATGCTTCGTTTCTGGAAA
TGTGAAGATGTCCCGAAGTTACAGCCGGCTGGGAGCTTAAATGTTGGTCC
TGGGTTTGTTAATGGAATTGCAATTGGCCATCAACATCGACTCCTGGCTA
CTGCGGTTGGTACAGAGCATAGATTCGGACGATGGGCATCGATCAAGAAG
GCAAAGAACACGGTGCAGTTCATTTCTTTACCAAACTTTGACTGA
back to top

Coding sequence (CDS) from alignment at tig00000092_pilon:445410..446804-

>Ggra1379.t1 ID=Ggra1379.t1|Name=Ggra1379.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000092_pilon:445410..446804- (Gracilaria gracilis GNS1m male)
ATGGTAGGCAAGCTCGCGACGAAAAAGCGAGCAAGGCCTGCGACGGACCG
TAGAAATCAGGCCCCGGATGCAAAGCGGAAACAGCCTGAGAAAGACGAAG
AAATCTTGTCGGATGAAGTGGATAGCGATCCAGAAATCGATAGAAGCTCA
GTCGAGTCGTCTGATGAATCGGACCATGAAAACGAAACGGTGGAACAAAA
AAGGCTTCGTTTGGCCCGCGCGTACCTTCGCCATGTTGGAGTCTCTGAAG
ATGCTGCAGTTTCGGACGATGGGGATGATTCAAAAAGTGACCAGCTTGGG
GCCAGCAACAAGTTGCTGCGAGAACAAGCTTTGAGAGACCAAGCCAAGTC
TTTCACGCATATTGCTGACCGGTTTTCCTCATCGATCAGCAGCCTTAAGA
TTAACAAGTGCAAAGGTCACGTTCTATCTCCAACATGCGTCGCATTGTGC
TCTCTTGACGATGCAACCGCTGTGTCTGGTGGGAAGGATGCCAGACTGAT
TGTCTGGGATGTCGAGACCGGGAAACGTCGACATGTTTTTAAACCAATCA
TTGACCAAGCAAAGAAGAAGAATCCTGCCGCTGCGAAAGGCCATGTCGGG
AATATATTAGCTGTAGCAATTACCGAGGATGGAAGTACGGCGGTATCCGG
CGGTAAAGACGGTCTAATTCGCGTTTGGGACGTTCGTGCCGGAAGTTTAA
TAGAGACGTTGCGTGGCCATAGAGATGCAGTGACTGGACTCACCTTTCGA
TCAGGCTCACGACAGTTGTTCTCAGCCTCAGCTGACCGTACTGTCAAAAT
ATGGGATATCAACGAAATGGCCTATGTGGAAACTCTGTTCGGGCATGGAG
GTGACGTGAATGCCATCAGTTCTATGTCAATGGAGCGCGCATTGTCTTGT
GGTAGGGACGGCACTCTACGGTTGTACAAAGTAGTAGAGGGATCGCAACT
TGTATTTCGCAATGCGAACACAATTTCACTGGATACCGTTTCTATGGTTA
GCGAGCATCGTTTCGTTTCTGGGGGGGATGACGGAACTGTTTGCTTGTGG
CAGATGAATAAGAAGAAGCCCTTATCCACTATCGAACATGCCCACGGTTC
AGGTCTTGGTTGTGAGAATTGGATTTCCTCCGTATCTGCTTTTCGAAACA
CAGACCTGGCCGTATCTGGAGCTGGCGATGGTATGCTTCGTTTCTGGAAA
TGTGAAGATGTCCCGAAGTTACAGCCGGCTGGGAGCTTAAATGTTGGTCC
TGGGTTTGTTAATGGAATTGCAATTGGCCATCAACATCGACTCCTGGCTA
CTGCGGTTGGTACAGAGCATAGATTCGGACGATGGGCATCGATCAAGAAG
GCAAAGAACACGGTGCAGTTCATTTCTTTACCAAACTTTGACTGA
back to top