Ggra1375.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1375.t1
Unique Name	Ggra1375.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:430943..432163 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1375	Ggra1375	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 430943..432163 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1375.t1.start1	Ggra1375.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 430943..430945 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1375.t1.CDS1	Ggra1375.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 430943..432163 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1375.t1.exon1	Ggra1375.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 430943..432163 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1375.t1.stop1	Ggra1375.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 432161..432163 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1375.t1	Ggra1375.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 430943..432163 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:430943..432163+
coding sequence from alignment at tig00000092_pilon:430943..432163+

mRNA sequence

>Ggra1375.t1 ID=Ggra1375.t1|Name=Ggra1375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MSPMESFSSDEVNKLPAVPRIRRSSGAKPPVPRGGRSGSKNTKRESTIAE
KKPVRQSSRQRIGKKSPREEFVTSDDDGNESSHVVVRRTSRRMQKTRKVI
EESDDYDEDGEDAENESSGESSDKDEPESNIEMTGEEEDDDLMDDDDDQS
KSVSVSTTRVKRRKMVKESSSESKDRLRDDGENESNDVNEDSNYFTNESG
DGEGGEIIRGQKDILAQLEADVNNESEGFKSESSEEMKPMTSRRLTSRQR
AMQGEDVKLEYTKLNSPKAKKKDAQEDWDHDEEMELKRQQKARLRQMVSE
KRNREKRAAMVDKVLRGVTSKRKRFTLATEARAAQVEVRLTQNEMRDGCM
RYVSNKSGSTISIPKDTAVPPYLSKSLKASYPPICTRDPKTGKRVFPNVP
ALAATE*

spliced messenger RNA

>Ggra1375.t1 ID=Ggra1375.t1|Name=Ggra1375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000092_pilon:430943..432163+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGATGGAGTCCTTCAGCAGTGACGAAGTGAACAAGCTGCCAGC
TGTTCCGCGCATTCGCCGCAGCAGCGGCGCAAAGCCCCCGGTTCCTCGTG
GTGGCCGGTCGGGCAGTAAGAACACTAAACGTGAATCAACTATTGCCGAG
AAGAAGCCCGTCAGGCAATCGTCGCGTCAACGAATTGGAAAGAAGAGTCC
CCGCGAAGAGTTTGTAACCAGTGATGACGACGGGAACGAGTCTTCGCATG
TCGTGGTTCGGCGCACGTCTCGTCGCATGCAGAAGACTCGGAAGGTTATT
GAGGAATCTGACGACTACGACGAAGATGGCGAGGACGCTGAGAATGAAAG
TAGTGGAGAATCATCTGACAAAGATGAGCCTGAATCGAATATTGAAATGA
CCGGAGAGGAAGAAGATGATGATCTAATGGACGACGATGATGACCAGTCC
AAGAGCGTCTCTGTTTCCACTACCCGCGTGAAGCGAAGGAAGATGGTTAA
GGAAAGCAGCAGTGAGAGCAAGGATAGACTTCGCGACGACGGTGAGAACG
AAAGCAATGACGTCAACGAAGACAGCAACTATTTTACGAACGAGAGCGGA
GACGGTGAAGGCGGCGAAATCATCAGAGGACAGAAAGATATTCTAGCGCA
GCTGGAAGCCGATGTGAATAATGAGTCAGAGGGCTTCAAGAGTGAGTCGT
CAGAGGAAATGAAACCGATGACGTCAAGGAGACTGACGAGCAGGCAAAGG
GCTATGCAAGGGGAGGACGTTAAGCTTGAGTATACTAAGCTCAATTCCCC
CAAAGCAAAAAAGAAGGATGCCCAAGAAGATTGGGATCACGATGAAGAAA
TGGAACTCAAGCGACAACAGAAGGCAAGGCTTCGTCAGATGGTGTCAGAA
AAGAGGAATAGGGAGAAGAGAGCTGCGATGGTAGACAAAGTTCTTAGAGG
GGTGACTTCCAAACGAAAAAGGTTTACTCTGGCAACTGAAGCTAGGGCTG
CACAGGTTGAAGTACGTTTGACGCAGAACGAGATGCGAGATGGTTGTATG
CGATACGTGAGCAACAAGAGTGGCTCTACAATTTCGATACCGAAAGATAC
GGCTGTACCGCCATACCTGAGTAAGAGCCTTAAGGCTTCATATCCGCCGA
TATGCACACGGGACCCTAAGACAGGGAAGAGAGTGTTTCCTAACGTGCCA
GCTTTGGCTGCGACTGAATGA

protein sequence of Ggra1375.t1

>Ggra1375.t1 ID=Ggra1375.t1|Name=Ggra1375.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MSPMESFSSDEVNKLPAVPRIRRSSGAKPPVPRGGRSGSKNTKRESTIAE
KKPVRQSSRQRIGKKSPREEFVTSDDDGNESSHVVVRRTSRRMQKTRKVI
EESDDYDEDGEDAENESSGESSDKDEPESNIEMTGEEEDDDLMDDDDDQS
KSVSVSTTRVKRRKMVKESSSESKDRLRDDGENESNDVNEDSNYFTNESG
DGEGGEIIRGQKDILAQLEADVNNESEGFKSESSEEMKPMTSRRLTSRQR
AMQGEDVKLEYTKLNSPKAKKKDAQEDWDHDEEMELKRQQKARLRQMVSE
KRNREKRAAMVDKVLRGVTSKRKRFTLATEARAAQVEVRLTQNEMRDGCM
RYVSNKSGSTISIPKDTAVPPYLSKSLKASYPPICTRDPKTGKRVFPNVP
ALAATE*

mRNA from alignment at tig00000092_pilon:430943..432163+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1375.t1 ID=Ggra1375.t1|Name=Ggra1375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000092_pilon:430943..432163+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGATGGAGTCCTTCAGCAGTGACGAAGTGAACAAGCTGCCAGC
TGTTCCGCGCATTCGCCGCAGCAGCGGCGCAAAGCCCCCGGTTCCTCGTG
GTGGCCGGTCGGGCAGTAAGAACACTAAACGTGAATCAACTATTGCCGAG
AAGAAGCCCGTCAGGCAATCGTCGCGTCAACGAATTGGAAAGAAGAGTCC
CCGCGAAGAGTTTGTAACCAGTGATGACGACGGGAACGAGTCTTCGCATG
TCGTGGTTCGGCGCACGTCTCGTCGCATGCAGAAGACTCGGAAGGTTATT
GAGGAATCTGACGACTACGACGAAGATGGCGAGGACGCTGAGAATGAAAG
TAGTGGAGAATCATCTGACAAAGATGAGCCTGAATCGAATATTGAAATGA
CCGGAGAGGAAGAAGATGATGATCTAATGGACGACGATGATGACCAGTCC
AAGAGCGTCTCTGTTTCCACTACCCGCGTGAAGCGAAGGAAGATGGTTAA
GGAAAGCAGCAGTGAGAGCAAGGATAGACTTCGCGACGACGGTGAGAACG
AAAGCAATGACGTCAACGAAGACAGCAACTATTTTACGAACGAGAGCGGA
GACGGTGAAGGCGGCGAAATCATCAGAGGACAGAAAGATATTCTAGCGCA
GCTGGAAGCCGATGTGAATAATGAGTCAGAGGGCTTCAAGAGTGAGTCGT
CAGAGGAAATGAAACCGATGACGTCAAGGAGACTGACGAGCAGGCAAAGG
GCTATGCAAGGGGAGGACGTTAAGCTTGAGTATACTAAGCTCAATTCCCC
CAAAGCAAAAAAGAAGGATGCCCAAGAAGATTGGGATCACGATGAAGAAA
TGGAACTCAAGCGACAACAGAAGGCAAGGCTTCGTCAGATGGTGTCAGAA
AAGAGGAATAGGGAGAAGAGAGCTGCGATGGTAGACAAAGTTCTTAGAGG
GGTGACTTCCAAACGAAAAAGGTTTACTCTGGCAACTGAAGCTAGGGCTG
CACAGGTTGAAGTACGTTTGACGCAGAACGAGATGCGAGATGGTTGTATG
CGATACGTGAGCAACAAGAGTGGCTCTACAATTTCGATACCGAAAGATAC
GGCTGTACCGCCATACCTGAGTAAGAGCCTTAAGGCTTCATATCCGCCGA
TATGCACACGGGACCCTAAGACAGGGAAGAGAGTGTTTCCTAACGTGCCA
GCTTTGGCTGCGACTGAATGA

Coding sequence (CDS) from alignment at tig00000092_pilon:430943..432163+

>Ggra1375.t1 ID=Ggra1375.t1|Name=Ggra1375.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000092_pilon:430943..432163+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGATGGAGTCCTTCAGCAGTGACGAAGTGAACAAGCTGCCAGC
TGTTCCGCGCATTCGCCGCAGCAGCGGCGCAAAGCCCCCGGTTCCTCGTG
GTGGCCGGTCGGGCAGTAAGAACACTAAACGTGAATCAACTATTGCCGAG
AAGAAGCCCGTCAGGCAATCGTCGCGTCAACGAATTGGAAAGAAGAGTCC
CCGCGAAGAGTTTGTAACCAGTGATGACGACGGGAACGAGTCTTCGCATG
TCGTGGTTCGGCGCACGTCTCGTCGCATGCAGAAGACTCGGAAGGTTATT
GAGGAATCTGACGACTACGACGAAGATGGCGAGGACGCTGAGAATGAAAG
TAGTGGAGAATCATCTGACAAAGATGAGCCTGAATCGAATATTGAAATGA
CCGGAGAGGAAGAAGATGATGATCTAATGGACGACGATGATGACCAGTCC
AAGAGCGTCTCTGTTTCCACTACCCGCGTGAAGCGAAGGAAGATGGTTAA
GGAAAGCAGCAGTGAGAGCAAGGATAGACTTCGCGACGACGGTGAGAACG
AAAGCAATGACGTCAACGAAGACAGCAACTATTTTACGAACGAGAGCGGA
GACGGTGAAGGCGGCGAAATCATCAGAGGACAGAAAGATATTCTAGCGCA
GCTGGAAGCCGATGTGAATAATGAGTCAGAGGGCTTCAAGAGTGAGTCGT
CAGAGGAAATGAAACCGATGACGTCAAGGAGACTGACGAGCAGGCAAAGG
GCTATGCAAGGGGAGGACGTTAAGCTTGAGTATACTAAGCTCAATTCCCC
CAAAGCAAAAAAGAAGGATGCCCAAGAAGATTGGGATCACGATGAAGAAA
TGGAACTCAAGCGACAACAGAAGGCAAGGCTTCGTCAGATGGTGTCAGAA
AAGAGGAATAGGGAGAAGAGAGCTGCGATGGTAGACAAAGTTCTTAGAGG
GGTGACTTCCAAACGAAAAAGGTTTACTCTGGCAACTGAAGCTAGGGCTG
CACAGGTTGAAGTACGTTTGACGCAGAACGAGATGCGAGATGGTTGTATG
CGATACGTGAGCAACAAGAGTGGCTCTACAATTTCGATACCGAAAGATAC
GGCTGTACCGCCATACCTGAGTAAGAGCCTTAAGGCTTCATATCCGCCGA
TATGCACACGGGACCCTAAGACAGGGAAGAGAGTGTTTCCTAACGTGCCA
GCTTTGGCTGCGACTGAATGA