Ggra1374.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1374.t1
Unique Name	Ggra1374.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	607

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:425538..427358 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005098277.1
Preferred name	WDR1
PFAMs	WD40
Max annot lvl	33208\|Metazoa
GOs	GO:0000003,GO:0000902,GO:0000904,GO:0001667,GO:0001736,GO:0001738,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0002252,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002576,GO:0003006,GO:0003008,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005884,GO:0005886,GO:0005911,GO:0005938,GO:0006810,GO:0006887,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007043,GO:0007163,GO:0007164,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007600,GO:0007605,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0008544,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0010631,GO:0010638,GO:0010639,GO:0010927,GO:0014013,GO:0014866,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016333,GO:0016334,GO:0016477,GO:0016528,GO:0019953,GO:0022008,GO:0022411,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030016,GO:0030029,GO:0030030,GO:0030036,GO:0030042,GO:0030043,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030220,GO:0030239,GO:0030240,GO:0030707,GO:0030832,GO:0030833,GO:0030834,GO:0030836,GO:0030837,GO:0030855,GO:0030863,GO:0030864,GO:0030865,GO:0031032,GO:0031333,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0033043,GO:0034315,GO:0034316,GO:0034329,GO:0034330,GO:0034762,GO:0034765,GO:0035088,GO:0035090,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0036344,GO:0040011,GO:0040012,GO:0042247,GO:0042391,GO:0042641,GO:0042643,GO:0042692,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043243,GO:0043244,GO:0043254,GO:0043269,GO:0043292,GO:0043297,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045197,GO:0045199,GO:0045214,GO:0045216,GO:0045595,GO:0045685,GO:0046903,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048609,GO:0048646,GO:0048699,GO:0048707,GO:0048713,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050900,GO:0050954,GO:0051015,GO:0051049,GO:0051125,GO:0051126,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051179,GO:0051234,GO:0051239,GO:0051261,GO:0051493,GO:0051494,GO:0051495,GO:0051674,GO:0051704,GO:0051960,GO:0055001,GO:0055002,GO:0060284,GO:0060306,GO:0060307,GO:0060429,GO:0060562,GO:0061061,GO:0061245,GO:0065007,GO:0065008,GO:0070925,GO:0071689,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0097435,GO:0097529,GO:0097530,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0099623,GO:0110053,GO:0120036,GO:1901879,GO:1901881,GO:1902903,GO:1902904,GO:1902905,GO:1990266,GO:2000026
Evalue	9.26e-56
EggNOG OGs	KOG0318@1\|root,KOG0318@2759\|Eukaryota,38FD6@33154\|Opisthokonta,3BHXR@33208\|Metazoa,3CVF4@33213\|Bilateria
Description	positive regulation of actin filament depolymerization
COG category	Z

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1374	Ggra1374	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 425538..427358 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1374.t1.stop1	Ggra1374.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 425538..425540 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1374.t1.CDS1	Ggra1374.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 425538..427358 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1374.t1.exon1	Ggra1374.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 425538..427358 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1374.t1.start1	Ggra1374.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 427356..427358 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1374.t1	Ggra1374.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 425538..427358 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:425538..427358-
coding sequence from alignment at tig00000092_pilon:425538..427358-

mRNA sequence

>Ggra1374.t1 ID=Ggra1374.t1|Name=Ggra1374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=607bp
MANTLTLKQLYAGVPNTVRGEASHISADPTGDTSLVTYASGRVAVVRSVQ
DPLSALVFSLHSAPVTCARFTPDGKQIASADENGFVRIWNVETGAQKKEM
HVYNGPVRDLSFTPDGKYMVLAGESRGAFGKVIKIPSGGSAGVCGGHTKN
GISCDAMKGYVVSGSEDMTVGLFKGPPVREIDIPTFFKHHTGFINDVRFS
PSGKFLAIASTDRTCSIVDVAAKEVVCTIAEHAASVTGIIWFDDSNLMTS
SNDKTNKFWSIPDGKCLRTITYGKEVMDMQVGCALSKKGGETVSVSLRPQ
INVVEAGQDSVTKIFRGHCKQIVGLAAVGNNVYTADYSGLMVAWEMDKGS
ADLSFNGKGPAASVCAIAANEDVVANVGLDGKVFITPRNTLKYGKPVVVK
GGGVDITLPIGQNPAYSAIMVNETRLVTINSEAKAIEAEMKFGNGETGTS
VAVNNEGLIAVGFEVSGGSGELRFYTVSGSSFSEAGNRMRMPSAPNRIAF
SPDGEYLAVGEKSRRVKLYNATTRETVTGGGLAHTARVDAIAFSLDGSMV
ASGGMDGSVAVWPVDSEDEPLKLKTAHRSGVTGIGFVSENCIVTSGGDSC
VRTWNM*

spliced messenger RNA

>Ggra1374.t1 ID=Ggra1374.t1|Name=Ggra1374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000092_pilon:425538..427358- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACACACTCACCCTCAAGCAGCTGTACGCGGGTGTGCCAAACAC
AGTGAGAGGCGAAGCTTCTCACATCAGCGCTGATCCCACCGGTGACACTT
CGCTCGTCACCTATGCCTCCGGCCGAGTTGCTGTCGTTCGCAGCGTTCAA
GATCCCCTCTCCGCGCTAGTTTTCTCCCTGCACTCCGCCCCTGTCACATG
CGCTCGTTTCACCCCGGACGGCAAGCAAATCGCTTCTGCCGACGAGAACG
GTTTTGTACGCATCTGGAACGTCGAAACAGGCGCTCAGAAGAAAGAGATG
CACGTGTATAATGGCCCTGTTCGGGATCTTTCTTTCACCCCCGACGGCAA
GTACATGGTGCTTGCTGGTGAGAGTCGCGGCGCTTTTGGAAAGGTTATCA
AGATACCTTCTGGAGGCTCTGCTGGTGTGTGCGGGGGACACACGAAGAAC
GGTATTTCGTGCGATGCCATGAAGGGATACGTTGTCTCCGGCAGTGAGGA
TATGACTGTCGGTCTCTTCAAGGGCCCTCCGGTGCGCGAGATTGACATTC
CTACGTTTTTCAAGCACCATACTGGGTTCATTAATGACGTTCGTTTCTCG
CCGAGCGGCAAGTTTTTGGCTATTGCTAGCACCGACCGAACCTGCAGCAT
CGTTGACGTCGCGGCAAAAGAAGTGGTTTGTACTATTGCGGAACATGCTG
CGAGTGTTACCGGTATTATCTGGTTCGATGATAGCAATCTCATGACTAGT
TCAAATGACAAGACCAACAAGTTTTGGTCCATTCCAGATGGAAAGTGCCT
TCGTACCATTACGTACGGTAAAGAGGTCATGGACATGCAGGTTGGATGTG
CACTTTCTAAGAAAGGAGGGGAGACCGTCTCTGTCAGTTTGAGACCACAA
ATCAATGTTGTTGAAGCTGGTCAAGACTCTGTCACTAAAATATTCCGCGG
GCATTGCAAACAAATCGTCGGCCTGGCTGCTGTGGGAAACAATGTGTACA
CTGCAGACTACTCCGGTCTCATGGTAGCATGGGAAATGGACAAGGGAAGC
GCTGACCTTAGCTTCAATGGTAAGGGACCTGCCGCATCCGTATGCGCCAT
CGCGGCTAACGAAGACGTTGTCGCCAACGTGGGTTTGGATGGAAAGGTCT
TCATTACGCCCCGAAACACTCTCAAGTATGGCAAACCTGTTGTGGTTAAG
GGTGGCGGCGTTGACATTACGCTTCCTATCGGCCAGAACCCTGCCTATTC
GGCGATTATGGTGAACGAGACGCGATTGGTGACAATTAATAGCGAAGCAA
AGGCAATCGAAGCAGAGATGAAGTTCGGTAACGGCGAAACTGGTACATCG
GTAGCCGTCAACAACGAAGGGCTGATTGCTGTTGGGTTTGAGGTCTCCGG
TGGCTCCGGTGAGTTGAGATTCTACACGGTCAGTGGTTCTAGCTTCAGTG
AGGCTGGAAACCGCATGAGAATGCCGTCTGCTCCCAACAGGATTGCATTC
TCTCCGGATGGCGAGTATCTCGCCGTGGGTGAGAAGTCAAGAAGAGTGAA
GCTCTACAATGCTACCACCAGAGAGACAGTCACTGGTGGAGGCCTGGCCC
ACACAGCGAGAGTGGATGCCATTGCCTTCTCGCTTGATGGAAGCATGGTG
GCTTCAGGAGGAATGGATGGATCTGTTGCGGTGTGGCCGGTTGACTCGGA
GGACGAACCTCTAAAACTGAAGACTGCGCATCGTAGCGGCGTGACTGGCA
TAGGTTTTGTGTCGGAGAACTGTATCGTCACCTCCGGAGGTGACTCCTGT
GTCCGGACTTGGAATATGTAG

protein sequence of Ggra1374.t1

>Ggra1374.t1 ID=Ggra1374.t1|Name=Ggra1374.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=607bp
MANTLTLKQLYAGVPNTVRGEASHISADPTGDTSLVTYASGRVAVVRSVQ
DPLSALVFSLHSAPVTCARFTPDGKQIASADENGFVRIWNVETGAQKKEM
HVYNGPVRDLSFTPDGKYMVLAGESRGAFGKVIKIPSGGSAGVCGGHTKN
GISCDAMKGYVVSGSEDMTVGLFKGPPVREIDIPTFFKHHTGFINDVRFS
PSGKFLAIASTDRTCSIVDVAAKEVVCTIAEHAASVTGIIWFDDSNLMTS
SNDKTNKFWSIPDGKCLRTITYGKEVMDMQVGCALSKKGGETVSVSLRPQ
INVVEAGQDSVTKIFRGHCKQIVGLAAVGNNVYTADYSGLMVAWEMDKGS
ADLSFNGKGPAASVCAIAANEDVVANVGLDGKVFITPRNTLKYGKPVVVK
GGGVDITLPIGQNPAYSAIMVNETRLVTINSEAKAIEAEMKFGNGETGTS
VAVNNEGLIAVGFEVSGGSGELRFYTVSGSSFSEAGNRMRMPSAPNRIAF
SPDGEYLAVGEKSRRVKLYNATTRETVTGGGLAHTARVDAIAFSLDGSMV
ASGGMDGSVAVWPVDSEDEPLKLKTAHRSGVTGIGFVSENCIVTSGGDSC
VRTWNM*

mRNA from alignment at tig00000092_pilon:425538..427358-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1374.t1 ID=Ggra1374.t1|Name=Ggra1374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000092_pilon:425538..427358- (Gracilaria gracilis GNS1m male)
ATGGCAAACACACTCACCCTCAAGCAGCTGTACGCGGGTGTGCCAAACAC
AGTGAGAGGCGAAGCTTCTCACATCAGCGCTGATCCCACCGGTGACACTT
CGCTCGTCACCTATGCCTCCGGCCGAGTTGCTGTCGTTCGCAGCGTTCAA
GATCCCCTCTCCGCGCTAGTTTTCTCCCTGCACTCCGCCCCTGTCACATG
CGCTCGTTTCACCCCGGACGGCAAGCAAATCGCTTCTGCCGACGAGAACG
GTTTTGTACGCATCTGGAACGTCGAAACAGGCGCTCAGAAGAAAGAGATG
CACGTGTATAATGGCCCTGTTCGGGATCTTTCTTTCACCCCCGACGGCAA
GTACATGGTGCTTGCTGGTGAGAGTCGCGGCGCTTTTGGAAAGGTTATCA
AGATACCTTCTGGAGGCTCTGCTGGTGTGTGCGGGGGACACACGAAGAAC
GGTATTTCGTGCGATGCCATGAAGGGATACGTTGTCTCCGGCAGTGAGGA
TATGACTGTCGGTCTCTTCAAGGGCCCTCCGGTGCGCGAGATTGACATTC
CTACGTTTTTCAAGCACCATACTGGGTTCATTAATGACGTTCGTTTCTCG
CCGAGCGGCAAGTTTTTGGCTATTGCTAGCACCGACCGAACCTGCAGCAT
CGTTGACGTCGCGGCAAAAGAAGTGGTTTGTACTATTGCGGAACATGCTG
CGAGTGTTACCGGTATTATCTGGTTCGATGATAGCAATCTCATGACTAGT
TCAAATGACAAGACCAACAAGTTTTGGTCCATTCCAGATGGAAAGTGCCT
TCGTACCATTACGTACGGTAAAGAGGTCATGGACATGCAGGTTGGATGTG
CACTTTCTAAGAAAGGAGGGGAGACCGTCTCTGTCAGTTTGAGACCACAA
ATCAATGTTGTTGAAGCTGGTCAAGACTCTGTCACTAAAATATTCCGCGG
GCATTGCAAACAAATCGTCGGCCTGGCTGCTGTGGGAAACAATGTGTACA
CTGCAGACTACTCCGGTCTCATGGTAGCATGGGAAATGGACAAGGGAAGC
GCTGACCTTAGCTTCAATGGTAAGGGACCTGCCGCATCCGTATGCGCCAT
CGCGGCTAACGAAGACGTTGTCGCCAACGTGGGTTTGGATGGAAAGGTCT
TCATTACGCCCCGAAACACTCTCAAGTATGGCAAACCTGTTGTGGTTAAG
GGTGGCGGCGTTGACATTACGCTTCCTATCGGCCAGAACCCTGCCTATTC
GGCGATTATGGTGAACGAGACGCGATTGGTGACAATTAATAGCGAAGCAA
AGGCAATCGAAGCAGAGATGAAGTTCGGTAACGGCGAAACTGGTACATCG
GTAGCCGTCAACAACGAAGGGCTGATTGCTGTTGGGTTTGAGGTCTCCGG
TGGCTCCGGTGAGTTGAGATTCTACACGGTCAGTGGTTCTAGCTTCAGTG
AGGCTGGAAACCGCATGAGAATGCCGTCTGCTCCCAACAGGATTGCATTC
TCTCCGGATGGCGAGTATCTCGCCGTGGGTGAGAAGTCAAGAAGAGTGAA
GCTCTACAATGCTACCACCAGAGAGACAGTCACTGGTGGAGGCCTGGCCC
ACACAGCGAGAGTGGATGCCATTGCCTTCTCGCTTGATGGAAGCATGGTG
GCTTCAGGAGGAATGGATGGATCTGTTGCGGTGTGGCCGGTTGACTCGGA
GGACGAACCTCTAAAACTGAAGACTGCGCATCGTAGCGGCGTGACTGGCA
TAGGTTTTGTGTCGGAGAACTGTATCGTCACCTCCGGAGGTGACTCCTGT
GTCCGGACTTGGAATATGTAG

Coding sequence (CDS) from alignment at tig00000092_pilon:425538..427358-

>Ggra1374.t1 ID=Ggra1374.t1|Name=Ggra1374.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1821bp|location=Sequence derived from alignment at tig00000092_pilon:425538..427358- (Gracilaria gracilis GNS1m male)
ATGGCAAACACACTCACCCTCAAGCAGCTGTACGCGGGTGTGCCAAACAC
AGTGAGAGGCGAAGCTTCTCACATCAGCGCTGATCCCACCGGTGACACTT
CGCTCGTCACCTATGCCTCCGGCCGAGTTGCTGTCGTTCGCAGCGTTCAA
GATCCCCTCTCCGCGCTAGTTTTCTCCCTGCACTCCGCCCCTGTCACATG
CGCTCGTTTCACCCCGGACGGCAAGCAAATCGCTTCTGCCGACGAGAACG
GTTTTGTACGCATCTGGAACGTCGAAACAGGCGCTCAGAAGAAAGAGATG
CACGTGTATAATGGCCCTGTTCGGGATCTTTCTTTCACCCCCGACGGCAA
GTACATGGTGCTTGCTGGTGAGAGTCGCGGCGCTTTTGGAAAGGTTATCA
AGATACCTTCTGGAGGCTCTGCTGGTGTGTGCGGGGGACACACGAAGAAC
GGTATTTCGTGCGATGCCATGAAGGGATACGTTGTCTCCGGCAGTGAGGA
TATGACTGTCGGTCTCTTCAAGGGCCCTCCGGTGCGCGAGATTGACATTC
CTACGTTTTTCAAGCACCATACTGGGTTCATTAATGACGTTCGTTTCTCG
CCGAGCGGCAAGTTTTTGGCTATTGCTAGCACCGACCGAACCTGCAGCAT
CGTTGACGTCGCGGCAAAAGAAGTGGTTTGTACTATTGCGGAACATGCTG
CGAGTGTTACCGGTATTATCTGGTTCGATGATAGCAATCTCATGACTAGT
TCAAATGACAAGACCAACAAGTTTTGGTCCATTCCAGATGGAAAGTGCCT
TCGTACCATTACGTACGGTAAAGAGGTCATGGACATGCAGGTTGGATGTG
CACTTTCTAAGAAAGGAGGGGAGACCGTCTCTGTCAGTTTGAGACCACAA
ATCAATGTTGTTGAAGCTGGTCAAGACTCTGTCACTAAAATATTCCGCGG
GCATTGCAAACAAATCGTCGGCCTGGCTGCTGTGGGAAACAATGTGTACA
CTGCAGACTACTCCGGTCTCATGGTAGCATGGGAAATGGACAAGGGAAGC
GCTGACCTTAGCTTCAATGGTAAGGGACCTGCCGCATCCGTATGCGCCAT
CGCGGCTAACGAAGACGTTGTCGCCAACGTGGGTTTGGATGGAAAGGTCT
TCATTACGCCCCGAAACACTCTCAAGTATGGCAAACCTGTTGTGGTTAAG
GGTGGCGGCGTTGACATTACGCTTCCTATCGGCCAGAACCCTGCCTATTC
GGCGATTATGGTGAACGAGACGCGATTGGTGACAATTAATAGCGAAGCAA
AGGCAATCGAAGCAGAGATGAAGTTCGGTAACGGCGAAACTGGTACATCG
GTAGCCGTCAACAACGAAGGGCTGATTGCTGTTGGGTTTGAGGTCTCCGG
TGGCTCCGGTGAGTTGAGATTCTACACGGTCAGTGGTTCTAGCTTCAGTG
AGGCTGGAAACCGCATGAGAATGCCGTCTGCTCCCAACAGGATTGCATTC
TCTCCGGATGGCGAGTATCTCGCCGTGGGTGAGAAGTCAAGAAGAGTGAA
GCTCTACAATGCTACCACCAGAGAGACAGTCACTGGTGGAGGCCTGGCCC
ACACAGCGAGAGTGGATGCCATTGCCTTCTCGCTTGATGGAAGCATGGTG
GCTTCAGGAGGAATGGATGGATCTGTTGCGGTGTGGCCGGTTGACTCGGA
GGACGAACCTCTAAAACTGAAGACTGCGCATCGTAGCGGCGTGACTGGCA
TAGGTTTTGTGTCGGAGAACTGTATCGTCACCTCCGGAGGTGACTCCTGT
GTCCGGACTTGGAATATGTAG