Ggra1373.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1373.t1
Unique Name	Ggra1373.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:415776..417299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1373	Ggra1373	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 415776..417299 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1373.t1.start1	Ggra1373.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 415776..415778 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1373.t1.CDS1	Ggra1373.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 415776..417299 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1373.t1.exon1	Ggra1373.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 415776..417299 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1373.t1.stop1	Ggra1373.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 417297..417299 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1373.t1	Ggra1373.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 415776..417299 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:415776..417299+
coding sequence from alignment at tig00000092_pilon:415776..417299+

mRNA sequence

>Ggra1373.t1 ID=Ggra1373.t1|Name=Ggra1373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=508bp
MPNSPFIPSAAGLRNEHKRAFEFMLWRNANRPISVYAAQLGKTEVRENQR
EDDPLVNVYPLTDQLAAVRKIKQDLRAHLRDALTGRAGRSLRDGSFSSLV
SRQRIPVVLLVLFWELLAPVLIVLLYLGLSFWHVCVWLGARVPMLSFVAF
NSTTHLIYGQESLQPGENGYSRVFRGGSDVSMEELEEELLSRNTTDVVET
TFREPITICVSYEHYAAKDGRRICREDLLALVMFIKQTGSCRLRFWIDSK
LPTTNDSSFERWVGRGVSPYGRYVAFLCPSAVRERDDSFWLCNEFHFAIS
GKGVIYLKEGELFYELRYGYELNLFHRLLQIVTGTASDWAMVRMEDQRKA
VRWAMCCLSATKAAGPLSMSPMIDCLAIEEGPIPAEIAISGKIGRVVEKF
GEQRLPVVRGRSWNKENPLLLKGQPAVDERACFWLGLIDDDPKKLYFVKS
FNVLVPVTKIVVLEVWLHKPFCPFGQNVVVSKVLIKVRWVVLKRARFVTL
PWLCDWE*

spliced messenger RNA

>Ggra1373.t1 ID=Ggra1373.t1|Name=Ggra1373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000092_pilon:415776..417299+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgccaaactcccCCTTCATCCCTTCGGCGGCCGGCTTGCGCAACGAGCA
CAAGAGGGCGTTTGAGTTCATGTTGTGGCGGAACGCAAACCGCCCCATCT
CCGTCTACGCAGCACAACTCGGGAAAACTGAAGTTCGCGAAAACCAGAGG
GAGGATGATCCCTTAGTGAACGTGTACCCGTTAACAGATCAGCTGGCGGC
GGTGCGCAAGATAAAGCAGGACTTGCGCGCGCATCTGCGCGACGCGCTAA
CAGGCCGTGCAGGCCGGTCGCTGCGCGACGGGTCCTTCTCGTCGCTTGTC
TCGCGGCAGCGCATTCCGGTGGTGCTGCTTGTACTTTTCTGGGAGCTACT
CGCTCCGGTATTGATCGTGCTTTTATATCTCGGACTGAGTTTCTGGCACG
TCTGCGTTTGGCTCGGTGCGCGCGTCCCAATGCTTTCGTTCGTGGCGTTC
AACAGTACCACCCACTTGATATACGGCCAGGAGTCCCTCCAGCCAGGGGA
AAACGGCTATTCTCGCGTCTTTCGCGGTGGCAGCGATGTCAGTATGGAAG
AGCTGGAAGAGGAACTGTTGTCGCGGAACACGACAGATGTTGTGGAGACA
ACATTCAGAGAGCCCATAACCATTTGTGTGTCTTACGAGCACTATGCGGC
GAAGGACGGCCGTAGAATCTGTCGCGAGGACTTACTTGCGTTGGTCATGT
TCATTAAGCAGACTGGGTCCTGTCGTTTGCGATTTTGGATCGATTCTAAG
CTGCCAACGACGAATGACAGTTCGTTCGAGCGGTGGGTTGGGCGCGGGGT
CTCGCCATATGGTCGGTATGTTGCGTTCTTGTGCCCGAGTGCGGTAAGAG
AGCGCGACGATTCGTTCTGGCTCTGCAACGAGTTCCATTTCGCGATTTCT
GGGAAGGGGGTGATCTATTTGAAGGAGGGGGAGTTGTTCTACGAGTTGAG
ATATGGGTACGAGCTTAATTTGTTTCATCGGCTGTTGCAAATTGTGACTG
GTACAGCGTCGGACTGGGCAATGGTGCGAATGGAGGATCAGAGAAAGGCG
GTGAGATGGGCCATGTGCTGTTTAAGTGCGACGAAAGCTGCTGGACCTTT
AAGCATGTCACCAATGATTGACTGCCTAGCGATTGAGGAAGGGCCGATTC
CGGCTGAAATCGCTATTTCGGGCAAGATTGGGCGGGTTGTGGAGAAGTTT
GGAGAGCAGCGGTTGCCAGTTGTACGTGGAAGAAGTTGGAACAAAGAAAA
TCCATTGTTGTTGAAAGGACAGCCTGCTGTAGACGAAAGAGCATGTTTTT
GGCTTGGGCTTATAGATGATGATCCGAAGAAATTGTATTTTGTCAAAAGC
TTTAATGTACTGGTACCTGTGACAAAGATTGTGGTATTGGAGGTTTGGTT
GCACAAACCTTTTTGCCCCTTTGGGCAAAATGTGGTAGTCAGCAAAGTTT
TGATAAAGGTAAGGTGGGTTGTTTTGAAGAGGGCCAGGTTTGTAACGCTT
CCATGGCTTTGCGATTGGGAATAA

protein sequence of Ggra1373.t1

>Ggra1373.t1 ID=Ggra1373.t1|Name=Ggra1373.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=508bp
MPNSPFIPSAAGLRNEHKRAFEFMLWRNANRPISVYAAQLGKTEVRENQR
EDDPLVNVYPLTDQLAAVRKIKQDLRAHLRDALTGRAGRSLRDGSFSSLV
SRQRIPVVLLVLFWELLAPVLIVLLYLGLSFWHVCVWLGARVPMLSFVAF
NSTTHLIYGQESLQPGENGYSRVFRGGSDVSMEELEEELLSRNTTDVVET
TFREPITICVSYEHYAAKDGRRICREDLLALVMFIKQTGSCRLRFWIDSK
LPTTNDSSFERWVGRGVSPYGRYVAFLCPSAVRERDDSFWLCNEFHFAIS
GKGVIYLKEGELFYELRYGYELNLFHRLLQIVTGTASDWAMVRMEDQRKA
VRWAMCCLSATKAAGPLSMSPMIDCLAIEEGPIPAEIAISGKIGRVVEKF
GEQRLPVVRGRSWNKENPLLLKGQPAVDERACFWLGLIDDDPKKLYFVKS
FNVLVPVTKIVVLEVWLHKPFCPFGQNVVVSKVLIKVRWVVLKRARFVTL
PWLCDWE*

mRNA from alignment at tig00000092_pilon:415776..417299+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1373.t1 ID=Ggra1373.t1|Name=Ggra1373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000092_pilon:415776..417299+ (Gracilaria gracilis GNS1m male)
atgccaaactcccCCTTCATCCCTTCGGCGGCCGGCTTGCGCAACGAGCA
CAAGAGGGCGTTTGAGTTCATGTTGTGGCGGAACGCAAACCGCCCCATCT
CCGTCTACGCAGCACAACTCGGGAAAACTGAAGTTCGCGAAAACCAGAGG
GAGGATGATCCCTTAGTGAACGTGTACCCGTTAACAGATCAGCTGGCGGC
GGTGCGCAAGATAAAGCAGGACTTGCGCGCGCATCTGCGCGACGCGCTAA
CAGGCCGTGCAGGCCGGTCGCTGCGCGACGGGTCCTTCTCGTCGCTTGTC
TCGCGGCAGCGCATTCCGGTGGTGCTGCTTGTACTTTTCTGGGAGCTACT
CGCTCCGGTATTGATCGTGCTTTTATATCTCGGACTGAGTTTCTGGCACG
TCTGCGTTTGGCTCGGTGCGCGCGTCCCAATGCTTTCGTTCGTGGCGTTC
AACAGTACCACCCACTTGATATACGGCCAGGAGTCCCTCCAGCCAGGGGA
AAACGGCTATTCTCGCGTCTTTCGCGGTGGCAGCGATGTCAGTATGGAAG
AGCTGGAAGAGGAACTGTTGTCGCGGAACACGACAGATGTTGTGGAGACA
ACATTCAGAGAGCCCATAACCATTTGTGTGTCTTACGAGCACTATGCGGC
GAAGGACGGCCGTAGAATCTGTCGCGAGGACTTACTTGCGTTGGTCATGT
TCATTAAGCAGACTGGGTCCTGTCGTTTGCGATTTTGGATCGATTCTAAG
CTGCCAACGACGAATGACAGTTCGTTCGAGCGGTGGGTTGGGCGCGGGGT
CTCGCCATATGGTCGGTATGTTGCGTTCTTGTGCCCGAGTGCGGTAAGAG
AGCGCGACGATTCGTTCTGGCTCTGCAACGAGTTCCATTTCGCGATTTCT
GGGAAGGGGGTGATCTATTTGAAGGAGGGGGAGTTGTTCTACGAGTTGAG
ATATGGGTACGAGCTTAATTTGTTTCATCGGCTGTTGCAAATTGTGACTG
GTACAGCGTCGGACTGGGCAATGGTGCGAATGGAGGATCAGAGAAAGGCG
GTGAGATGGGCCATGTGCTGTTTAAGTGCGACGAAAGCTGCTGGACCTTT
AAGCATGTCACCAATGATTGACTGCCTAGCGATTGAGGAAGGGCCGATTC
CGGCTGAAATCGCTATTTCGGGCAAGATTGGGCGGGTTGTGGAGAAGTTT
GGAGAGCAGCGGTTGCCAGTTGTACGTGGAAGAAGTTGGAACAAAGAAAA
TCCATTGTTGTTGAAAGGACAGCCTGCTGTAGACGAAAGAGCATGTTTTT
GGCTTGGGCTTATAGATGATGATCCGAAGAAATTGTATTTTGTCAAAAGC
TTTAATGTACTGGTACCTGTGACAAAGATTGTGGTATTGGAGGTTTGGTT
GCACAAACCTTTTTGCCCCTTTGGGCAAAATGTGGTAGTCAGCAAAGTTT
TGATAAAGGTAAGGTGGGTTGTTTTGAAGAGGGCCAGGTTTGTAACGCTT
CCATGGCTTTGCGATTGGGAATAA

Coding sequence (CDS) from alignment at tig00000092_pilon:415776..417299+

>Ggra1373.t1 ID=Ggra1373.t1|Name=Ggra1373.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00000092_pilon:415776..417299+ (Gracilaria gracilis GNS1m male)
atgccaaactcccCCTTCATCCCTTCGGCGGCCGGCTTGCGCAACGAGCA
CAAGAGGGCGTTTGAGTTCATGTTGTGGCGGAACGCAAACCGCCCCATCT
CCGTCTACGCAGCACAACTCGGGAAAACTGAAGTTCGCGAAAACCAGAGG
GAGGATGATCCCTTAGTGAACGTGTACCCGTTAACAGATCAGCTGGCGGC
GGTGCGCAAGATAAAGCAGGACTTGCGCGCGCATCTGCGCGACGCGCTAA
CAGGCCGTGCAGGCCGGTCGCTGCGCGACGGGTCCTTCTCGTCGCTTGTC
TCGCGGCAGCGCATTCCGGTGGTGCTGCTTGTACTTTTCTGGGAGCTACT
CGCTCCGGTATTGATCGTGCTTTTATATCTCGGACTGAGTTTCTGGCACG
TCTGCGTTTGGCTCGGTGCGCGCGTCCCAATGCTTTCGTTCGTGGCGTTC
AACAGTACCACCCACTTGATATACGGCCAGGAGTCCCTCCAGCCAGGGGA
AAACGGCTATTCTCGCGTCTTTCGCGGTGGCAGCGATGTCAGTATGGAAG
AGCTGGAAGAGGAACTGTTGTCGCGGAACACGACAGATGTTGTGGAGACA
ACATTCAGAGAGCCCATAACCATTTGTGTGTCTTACGAGCACTATGCGGC
GAAGGACGGCCGTAGAATCTGTCGCGAGGACTTACTTGCGTTGGTCATGT
TCATTAAGCAGACTGGGTCCTGTCGTTTGCGATTTTGGATCGATTCTAAG
CTGCCAACGACGAATGACAGTTCGTTCGAGCGGTGGGTTGGGCGCGGGGT
CTCGCCATATGGTCGGTATGTTGCGTTCTTGTGCCCGAGTGCGGTAAGAG
AGCGCGACGATTCGTTCTGGCTCTGCAACGAGTTCCATTTCGCGATTTCT
GGGAAGGGGGTGATCTATTTGAAGGAGGGGGAGTTGTTCTACGAGTTGAG
ATATGGGTACGAGCTTAATTTGTTTCATCGGCTGTTGCAAATTGTGACTG
GTACAGCGTCGGACTGGGCAATGGTGCGAATGGAGGATCAGAGAAAGGCG
GTGAGATGGGCCATGTGCTGTTTAAGTGCGACGAAAGCTGCTGGACCTTT
AAGCATGTCACCAATGATTGACTGCCTAGCGATTGAGGAAGGGCCGATTC
CGGCTGAAATCGCTATTTCGGGCAAGATTGGGCGGGTTGTGGAGAAGTTT
GGAGAGCAGCGGTTGCCAGTTGTACGTGGAAGAAGTTGGAACAAAGAAAA
TCCATTGTTGTTGAAAGGACAGCCTGCTGTAGACGAAAGAGCATGTTTTT
GGCTTGGGCTTATAGATGATGATCCGAAGAAATTGTATTTTGTCAAAAGC
TTTAATGTACTGGTACCTGTGACAAAGATTGTGGTATTGGAGGTTTGGTT
GCACAAACCTTTTTGCCCCTTTGGGCAAAATGTGGTAGTCAGCAAAGTTT
TGATAAAGGTAAGGTGGGTTGTTTTGAAGAGGGCCAGGTTTGTAACGCTT
CCATGGCTTTGCGATTGGGAATAA