Ggra1369.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1369.t1
Unique NameGgra1369.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:392462..393460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233589
PFAMsSNARE,Syntaxin
Max annot lvl554915|Amoebozoa
KEGG koko:K04560,ko:K08486
KEGG Pathwayko04130,ko04721,ko04911,ko05031,map04130,map04721,map04911,map05031
Evalue8.05e-16
EggNOG OGsCOG5074@1|root,KOG0810@2759|Eukaryota,3X8X7@554915|Amoebozoa
DescriptionBelongs to the syntaxin family
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1369Ggra1369Gracilaria gracilis GNS1m malegenetig00000092_pilon 392462..393460 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1369.t1.start1Ggra1369.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 392462..392464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1369.t1.CDS1Ggra1369.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 392462..393460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1369.t1.exon1Ggra1369.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 392462..393460 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1369.t1.stop1Ggra1369.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 393458..393460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1369.t1Ggra1369.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 392462..393460 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1369.t1 ID=Ggra1369.t1|Name=Ggra1369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MTDRLGELRPDAPSEPDDIEAGLDAAADAKLVAFNRKADAIEKVFVWADR
SIRTIDNDLSDPDALPSVTAQLDTIDAKLDAVRKHLRRIADDNRHLAAAP
DSAPATLRHRVNRFTALSKQFMAITTRMETVRERHRDVVTDGVKRDILAA
NPHATERQVERALQGGDLRAVLHQDDVHLHHQIEDLRSRNHDIQKLSKNI
VELHNMFTDMSLLVENQQELINNIEYNVKEVHQSTKKAADELVIARNHQK
AARKKKACCIISVIVILLAIAGGIIIWQGLKNDWFGGGNNNDSTATATAR
RVVPPPIPMPVAVPALPANDGHQQRLRTRWYD*
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spliced messenger RNA

>Ggra1369.t1 ID=Ggra1369.t1|Name=Ggra1369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000092_pilon:392462..393460+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACCGTCTCGGCGAGCTACGTCCGGACGCCCCGTCCGAGCCGGA
CGACATTGAGGCGGGCTTGGATGCCGCCGCCGACGCCAAGCTCGTCGCCT
TCAACCGCAAGGCAGACGCCATCGAGAAGGTGTTCGTGTGGGCCGACCGT
TCCATCCGCACCATCGACAACGACCTGTCCGACCCGGACGCCCTGCCCTC
CGTCACCGCCCAGCTGGACACCATCGACGCCAAATTGGACGCCGTGCGCA
AGCACCTGCGACGAATTGCCGACGACAATCGCCACTTGGCCGCGGCGCCC
GACAGTGCGCCCGCCACCTTGAGACATCGCGTCAACCGCTTCACTGCGCT
TAGTAAGCAGTTCATGGCCATCACCACCCGCATGGAGACCGTGAGGGAAC
GCCACCGCGACGTTGTTACCGACGGCGTCAAGCGCGATATTCTCGCCGCC
AACCCGCACGCCACGGAGCGCCAGGTGGAACGTGCCTTGCAGGGCGGTGA
CCTACGCGCCGTTTTGCATCAAGACGACGTGCATTTGCATCACCAGATAG
AGGATTTGCGCTCGAGGAACCACGACATACAAAAGCTCTCCAAGAATATT
GTGGAGCTGCACAACATGTTCACGGACATGAGCTTGCTGGTGGAGAACCA
ACAAGAGCTCATTAACAACATTGAGTACAACGTCAAGGAGGTGCACCAAA
GCACCAAGAAGGCCGCGGACGAACTGGTGATTGCGCGCAATCACCAAAAG
GCCGCCAGAAAGAAGAAGGCGTGCTGTATCATCAGCGTCATTGTCATCTT
GTTGGCCATTGCCGGCGGCATCATTATTTGGCAGGGACTCAAGAATGACT
GGTTTGGAGGTGGCAATAACAATGACTCTACCGCTACCGCTACCGCTCGA
CGCGTTGTGCCGCCTCCGATTCCGATGCCCGTGGCAGTACCTGCGCTACC
TGCGAACGACGGCCACCAACAGCGGCTCAGAACGCGATGGTACGACTAA
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protein sequence of Ggra1369.t1

>Ggra1369.t1 ID=Ggra1369.t1|Name=Ggra1369.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MTDRLGELRPDAPSEPDDIEAGLDAAADAKLVAFNRKADAIEKVFVWADR
SIRTIDNDLSDPDALPSVTAQLDTIDAKLDAVRKHLRRIADDNRHLAAAP
DSAPATLRHRVNRFTALSKQFMAITTRMETVRERHRDVVTDGVKRDILAA
NPHATERQVERALQGGDLRAVLHQDDVHLHHQIEDLRSRNHDIQKLSKNI
VELHNMFTDMSLLVENQQELINNIEYNVKEVHQSTKKAADELVIARNHQK
AARKKKACCIISVIVILLAIAGGIIIWQGLKNDWFGGGNNNDSTATATAR
RVVPPPIPMPVAVPALPANDGHQQRLRTRWYD*
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mRNA from alignment at tig00000092_pilon:392462..393460+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1369.t1 ID=Ggra1369.t1|Name=Ggra1369.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000092_pilon:392462..393460+ (Gracilaria gracilis GNS1m male)
ATGACGGACCGTCTCGGCGAGCTACGTCCGGACGCCCCGTCCGAGCCGGA
CGACATTGAGGCGGGCTTGGATGCCGCCGCCGACGCCAAGCTCGTCGCCT
TCAACCGCAAGGCAGACGCCATCGAGAAGGTGTTCGTGTGGGCCGACCGT
TCCATCCGCACCATCGACAACGACCTGTCCGACCCGGACGCCCTGCCCTC
CGTCACCGCCCAGCTGGACACCATCGACGCCAAATTGGACGCCGTGCGCA
AGCACCTGCGACGAATTGCCGACGACAATCGCCACTTGGCCGCGGCGCCC
GACAGTGCGCCCGCCACCTTGAGACATCGCGTCAACCGCTTCACTGCGCT
TAGTAAGCAGTTCATGGCCATCACCACCCGCATGGAGACCGTGAGGGAAC
GCCACCGCGACGTTGTTACCGACGGCGTCAAGCGCGATATTCTCGCCGCC
AACCCGCACGCCACGGAGCGCCAGGTGGAACGTGCCTTGCAGGGCGGTGA
CCTACGCGCCGTTTTGCATCAAGACGACGTGCATTTGCATCACCAGATAG
AGGATTTGCGCTCGAGGAACCACGACATACAAAAGCTCTCCAAGAATATT
GTGGAGCTGCACAACATGTTCACGGACATGAGCTTGCTGGTGGAGAACCA
ACAAGAGCTCATTAACAACATTGAGTACAACGTCAAGGAGGTGCACCAAA
GCACCAAGAAGGCCGCGGACGAACTGGTGATTGCGCGCAATCACCAAAAG
GCCGCCAGAAAGAAGAAGGCGTGCTGTATCATCAGCGTCATTGTCATCTT
GTTGGCCATTGCCGGCGGCATCATTATTTGGCAGGGACTCAAGAATGACT
GGTTTGGAGGTGGCAATAACAATGACTCTACCGCTACCGCTACCGCTCGA
CGCGTTGTGCCGCCTCCGATTCCGATGCCCGTGGCAGTACCTGCGCTACC
TGCGAACGACGGCCACCAACAGCGGCTCAGAACGCGATGGTACGACTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:392462..393460+

>Ggra1369.t1 ID=Ggra1369.t1|Name=Ggra1369.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000092_pilon:392462..393460+ (Gracilaria gracilis GNS1m male)
ATGACGGACCGTCTCGGCGAGCTACGTCCGGACGCCCCGTCCGAGCCGGA
CGACATTGAGGCGGGCTTGGATGCCGCCGCCGACGCCAAGCTCGTCGCCT
TCAACCGCAAGGCAGACGCCATCGAGAAGGTGTTCGTGTGGGCCGACCGT
TCCATCCGCACCATCGACAACGACCTGTCCGACCCGGACGCCCTGCCCTC
CGTCACCGCCCAGCTGGACACCATCGACGCCAAATTGGACGCCGTGCGCA
AGCACCTGCGACGAATTGCCGACGACAATCGCCACTTGGCCGCGGCGCCC
GACAGTGCGCCCGCCACCTTGAGACATCGCGTCAACCGCTTCACTGCGCT
TAGTAAGCAGTTCATGGCCATCACCACCCGCATGGAGACCGTGAGGGAAC
GCCACCGCGACGTTGTTACCGACGGCGTCAAGCGCGATATTCTCGCCGCC
AACCCGCACGCCACGGAGCGCCAGGTGGAACGTGCCTTGCAGGGCGGTGA
CCTACGCGCCGTTTTGCATCAAGACGACGTGCATTTGCATCACCAGATAG
AGGATTTGCGCTCGAGGAACCACGACATACAAAAGCTCTCCAAGAATATT
GTGGAGCTGCACAACATGTTCACGGACATGAGCTTGCTGGTGGAGAACCA
ACAAGAGCTCATTAACAACATTGAGTACAACGTCAAGGAGGTGCACCAAA
GCACCAAGAAGGCCGCGGACGAACTGGTGATTGCGCGCAATCACCAAAAG
GCCGCCAGAAAGAAGAAGGCGTGCTGTATCATCAGCGTCATTGTCATCTT
GTTGGCCATTGCCGGCGGCATCATTATTTGGCAGGGACTCAAGAATGACT
GGTTTGGAGGTGGCAATAACAATGACTCTACCGCTACCGCTACCGCTCGA
CGCGTTGTGCCGCCTCCGATTCCGATGCCCGTGGCAGTACCTGCGCTACC
TGCGAACGACGGCCACCAACAGCGGCTCAGAACGCGATGGTACGACTAA
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