Ggra1360.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1360.t1
Unique NameGgra1360.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:361212..361925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1360Ggra1360Gracilaria gracilis GNS1m malegenetig00000092_pilon 361212..361925 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1360.t1.start1Ggra1360.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 361212..361214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1360.t1.CDS1Ggra1360.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 361212..361925 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1360.t1.exon1Ggra1360.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 361212..361925 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1360.t1.stop1Ggra1360.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 361923..361925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1360.t1Ggra1360.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 361212..361925 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1360.t1 ID=Ggra1360.t1|Name=Ggra1360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=238bp
MTPFSAKPVKPSPDPADAPESVTTEAALQEALDAARNLISALKSENTRLR
HVNLESQRIITRLKSSRTTRARSDYKHARLSVLLHELERLQRGTQPQALQ
NFLPDATITRLARAIHEEQKGVPTRDRRAANIERCLEHLLGATLQCGNQP
AVHIGMLNPETGDRLAFELRWDDEHIEYTRQDAQFSGELPELAREEGMHF
EIAQGPNFLKEILNCLYPPKTPSTPHSPQPDDENPLA*
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spliced messenger RNA

>Ggra1360.t1 ID=Ggra1360.t1|Name=Ggra1360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000092_pilon:361212..361925+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCATTCTCCGCCAAACCCGTGAAGCCTTCTCCGGACCCGGCCGA
TGCGCCTGAATCTGTCACCACTGAGGCAGCGCTTCAAGAAGCACTAGATG
CCGCGCGAAACCTCATTTCGGCCCTCAAGAGTGAGAACACGCGTCTTCGC
CACGTCAATCTTGAATCTCAACGCATCATCACCCGGCTGAAATCCAGTCG
CACCACACGCGCTCGTTCCGATTACAAGCATGCACGACTTTCCGTTCTAC
TTCACGAGCTGGAACGTTTGCAAAGAGGCACTCAACCACAAGCGTTACAA
AACTTTTTGCCGGATGCTACTATTACGCGACTAGCGCGAGCGATACACGA
GGAGCAAAAGGGCGTCCCCACACGCGACAGGCGAGCTGCTAATATAGAGC
GATGTTTGGAACATTTGTTAGGTGCTACTTTACAATGCGGTAATCAACCG
GCAGTTCATATTGGCATGTTGAATCCGGAAACCGGCGATAGACTTGCGTT
TGAGCTACGATGGGACGACGAGCACATAGAGTACACAAGACAAGATGCTC
AGTTTTCGGGTGAGCTTCCAGAACTTGCGCGAGAAGAAGGAATGCACTTC
GAAATCGCACAAGGTCCTAACTTCCTTAAAGAGATTCTCAACTGCTTGTA
CCCACCAAAGACACCATCGACACCGCATTCTCCGCAACCGGACGATGAGA
ACCCATTGGCCTGA
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protein sequence of Ggra1360.t1

>Ggra1360.t1 ID=Ggra1360.t1|Name=Ggra1360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=238bp
MTPFSAKPVKPSPDPADAPESVTTEAALQEALDAARNLISALKSENTRLR
HVNLESQRIITRLKSSRTTRARSDYKHARLSVLLHELERLQRGTQPQALQ
NFLPDATITRLARAIHEEQKGVPTRDRRAANIERCLEHLLGATLQCGNQP
AVHIGMLNPETGDRLAFELRWDDEHIEYTRQDAQFSGELPELAREEGMHF
EIAQGPNFLKEILNCLYPPKTPSTPHSPQPDDENPLA*
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mRNA from alignment at tig00000092_pilon:361212..361925+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1360.t1 ID=Ggra1360.t1|Name=Ggra1360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000092_pilon:361212..361925+ (Gracilaria gracilis GNS1m male)
ATGACTCCATTCTCCGCCAAACCCGTGAAGCCTTCTCCGGACCCGGCCGA
TGCGCCTGAATCTGTCACCACTGAGGCAGCGCTTCAAGAAGCACTAGATG
CCGCGCGAAACCTCATTTCGGCCCTCAAGAGTGAGAACACGCGTCTTCGC
CACGTCAATCTTGAATCTCAACGCATCATCACCCGGCTGAAATCCAGTCG
CACCACACGCGCTCGTTCCGATTACAAGCATGCACGACTTTCCGTTCTAC
TTCACGAGCTGGAACGTTTGCAAAGAGGCACTCAACCACAAGCGTTACAA
AACTTTTTGCCGGATGCTACTATTACGCGACTAGCGCGAGCGATACACGA
GGAGCAAAAGGGCGTCCCCACACGCGACAGGCGAGCTGCTAATATAGAGC
GATGTTTGGAACATTTGTTAGGTGCTACTTTACAATGCGGTAATCAACCG
GCAGTTCATATTGGCATGTTGAATCCGGAAACCGGCGATAGACTTGCGTT
TGAGCTACGATGGGACGACGAGCACATAGAGTACACAAGACAAGATGCTC
AGTTTTCGGGTGAGCTTCCAGAACTTGCGCGAGAAGAAGGAATGCACTTC
GAAATCGCACAAGGTCCTAACTTCCTTAAAGAGATTCTCAACTGCTTGTA
CCCACCAAAGACACCATCGACACCGCATTCTCCGCAACCGGACGATGAGA
ACCCATTGGCCTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:361212..361925+

>Ggra1360.t1 ID=Ggra1360.t1|Name=Ggra1360.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000092_pilon:361212..361925+ (Gracilaria gracilis GNS1m male)
ATGACTCCATTCTCCGCCAAACCCGTGAAGCCTTCTCCGGACCCGGCCGA
TGCGCCTGAATCTGTCACCACTGAGGCAGCGCTTCAAGAAGCACTAGATG
CCGCGCGAAACCTCATTTCGGCCCTCAAGAGTGAGAACACGCGTCTTCGC
CACGTCAATCTTGAATCTCAACGCATCATCACCCGGCTGAAATCCAGTCG
CACCACACGCGCTCGTTCCGATTACAAGCATGCACGACTTTCCGTTCTAC
TTCACGAGCTGGAACGTTTGCAAAGAGGCACTCAACCACAAGCGTTACAA
AACTTTTTGCCGGATGCTACTATTACGCGACTAGCGCGAGCGATACACGA
GGAGCAAAAGGGCGTCCCCACACGCGACAGGCGAGCTGCTAATATAGAGC
GATGTTTGGAACATTTGTTAGGTGCTACTTTACAATGCGGTAATCAACCG
GCAGTTCATATTGGCATGTTGAATCCGGAAACCGGCGATAGACTTGCGTT
TGAGCTACGATGGGACGACGAGCACATAGAGTACACAAGACAAGATGCTC
AGTTTTCGGGTGAGCTTCCAGAACTTGCGCGAGAAGAAGGAATGCACTTC
GAAATCGCACAAGGTCCTAACTTCCTTAAAGAGATTCTCAACTGCTTGTA
CCCACCAAAGACACCATCGACACCGCATTCTCCGCAACCGGACGATGAGA
ACCCATTGGCCTGA
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