Ggra1358.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1358.t1
Unique NameGgra1358.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:359090..359560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000014527
Preferred nameC1orf123
PFAMsDUF866
Max annot lvl33208|Metazoa
Evalue1.17e-25
EggNOG OGsKOG1296@1|root,KOG1296@2759|Eukaryota,39TNN@33154|Opisthokonta,3BCDM@33208|Metazoa,3D2QW@33213|Bilateria,487ZM@7711|Chordata
DescriptionEukaryotic protein of unknown function (DUF866)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1358Ggra1358Gracilaria gracilis GNS1m malegenetig00000092_pilon 359090..359560 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1358.t1.start1Ggra1358.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 359090..359092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1358.t1.CDS1Ggra1358.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 359090..359560 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1358.t1.exon1Ggra1358.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 359090..359560 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1358.t1.stop1Ggra1358.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 359558..359560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1358.t1Ggra1358.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 359090..359560 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1358.t1 ID=Ggra1358.t1|Name=Ggra1358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MPKFSLQISAQLNNVTSVKPPDEYPWHLVLQCTSCGEKTSKPVVVSTAEE
VEGIRKGVVNLKLTCKLCSRVNDVKLLKQAAYLEEKAPEWGEVLAFECRG
LQPVEWIIADDVPLEILASSGPLEDGFIEDGEFYGYDEKLGDEANVTELK
KRFQKV*
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spliced messenger RNA

>Ggra1358.t1 ID=Ggra1358.t1|Name=Ggra1358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000092_pilon:359090..359560+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAAATTCAGCCTCCAGATATCTGCTCAACTGAACAACGTAACCTC
TGTGAAACCACCAGACGAATATCCATGGCACCTCGTGTTGCAGTGCACCT
CTTGTGGTGAAAAGACATCGAAGCCGGTGGTAGTATCCACCGCCGAGGAA
GTTGAGGGCATTCGGAAAGGTGTCGTCAACCTAAAGTTGACGTGCAAGCT
TTGCAGTCGGGTGAACGATGTGAAACTCCTTAAACAAGCCGCATATTTAG
AAGAGAAGGCACCAGAATGGGGTGAAGTTCTTGCTTTTGAATGTAGAGGG
TTACAACCAGTGGAATGGATTATCGCCGATGACGTTCCACTGGAGATCTT
GGCATCCAGCGGCCCACTTGAAGATGGCTTCATTGAAGATGGAGAGTTTT
ACGGGTATGACGAGAAGCTTGGCGACGAGGCGAACGTCACAGAATTGAAG
AAGCGCTTCCAAAAAGTGTAG
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protein sequence of Ggra1358.t1

>Ggra1358.t1 ID=Ggra1358.t1|Name=Ggra1358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MPKFSLQISAQLNNVTSVKPPDEYPWHLVLQCTSCGEKTSKPVVVSTAEE
VEGIRKGVVNLKLTCKLCSRVNDVKLLKQAAYLEEKAPEWGEVLAFECRG
LQPVEWIIADDVPLEILASSGPLEDGFIEDGEFYGYDEKLGDEANVTELK
KRFQKV*
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mRNA from alignment at tig00000092_pilon:359090..359560+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1358.t1 ID=Ggra1358.t1|Name=Ggra1358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000092_pilon:359090..359560+ (Gracilaria gracilis GNS1m male)
ATGCCTAAATTCAGCCTCCAGATATCTGCTCAACTGAACAACGTAACCTC
TGTGAAACCACCAGACGAATATCCATGGCACCTCGTGTTGCAGTGCACCT
CTTGTGGTGAAAAGACATCGAAGCCGGTGGTAGTATCCACCGCCGAGGAA
GTTGAGGGCATTCGGAAAGGTGTCGTCAACCTAAAGTTGACGTGCAAGCT
TTGCAGTCGGGTGAACGATGTGAAACTCCTTAAACAAGCCGCATATTTAG
AAGAGAAGGCACCAGAATGGGGTGAAGTTCTTGCTTTTGAATGTAGAGGG
TTACAACCAGTGGAATGGATTATCGCCGATGACGTTCCACTGGAGATCTT
GGCATCCAGCGGCCCACTTGAAGATGGCTTCATTGAAGATGGAGAGTTTT
ACGGGTATGACGAGAAGCTTGGCGACGAGGCGAACGTCACAGAATTGAAG
AAGCGCTTCCAAAAAGTGTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:359090..359560+

>Ggra1358.t1 ID=Ggra1358.t1|Name=Ggra1358.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000092_pilon:359090..359560+ (Gracilaria gracilis GNS1m male)
ATGCCTAAATTCAGCCTCCAGATATCTGCTCAACTGAACAACGTAACCTC
TGTGAAACCACCAGACGAATATCCATGGCACCTCGTGTTGCAGTGCACCT
CTTGTGGTGAAAAGACATCGAAGCCGGTGGTAGTATCCACCGCCGAGGAA
GTTGAGGGCATTCGGAAAGGTGTCGTCAACCTAAAGTTGACGTGCAAGCT
TTGCAGTCGGGTGAACGATGTGAAACTCCTTAAACAAGCCGCATATTTAG
AAGAGAAGGCACCAGAATGGGGTGAAGTTCTTGCTTTTGAATGTAGAGGG
TTACAACCAGTGGAATGGATTATCGCCGATGACGTTCCACTGGAGATCTT
GGCATCCAGCGGCCCACTTGAAGATGGCTTCATTGAAGATGGAGAGTTTT
ACGGGTATGACGAGAAGCTTGGCGACGAGGCGAACGTCACAGAATTGAAG
AAGCGCTTCCAAAAAGTGTAG
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