Ggra1356.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1356.t1
Unique Name	Ggra1356.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	604

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:353216..355027 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LT07
PFAMs	EOS1,Galactosyl_T
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00734
KEGG Reaction	R05927
KEGG Pathway	ko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG Module	M00057
Evalue	5.49e-11
EggNOG OGs	KOG2288@1\|root,KOG2288@2759\|Eukaryota
EC	2.4.1.134
Description	galactosyltransferase activity
COG category	M
CAZy	GT31
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1356	Ggra1356	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 353216..355027 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1356.t1.stop1	Ggra1356.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 353216..353218 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1356.t1.CDS1	Ggra1356.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 353216..355027 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1356.t1.exon1	Ggra1356.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 353216..355027 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1356.t1.start1	Ggra1356.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 355025..355027 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1356.t1	Ggra1356.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 353216..355027 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:353216..355027-
coding sequence from alignment at tig00000092_pilon:353216..355027-

mRNA sequence

>Ggra1356.t1 ID=Ggra1356.t1|Name=Ggra1356.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp
MKARHTSKQFRTRLALFLVLLSILLTVIYEVDIIQLSSRSLSGPLISAVT
STWTREQCHLLAMIPVSPAEIQAGTIRTWYSTISSNLSTIVCCVAVIRSE
RPHAQLVRNNDSCDTLHVPMVRPDDYLSLSEKVKLGITHALSYYDFNWVL
KTDSDSFVCFTRVLRLLSNFDPAGIVHVGRSESTNFLKPDPTHKWYDPGL
TDVLHNPRQHIEKGSVMHPPYMQGAGYVVSRGALKALNKVNKLLRYSPIE
DIMIGGWLIAFATHRASMGLDLWAYRPHCYLQPFDYISHKRKGKNKLEEC
TRNNHRCHEVSEGDDVDVRQVAFLIEVDFSNKTRAFIDVYESIRAAFPNN
EVIIGDTSSSDSAMKRFMFARSDDNVKVLWLRETARSVVLNELVSNTVSP
FLCVLSVEQKMSWETMIARMLRPVWNDEADVTSGFLVFNHNRLHSDQGLF
PNGHTIAQNNSEVAFEQVETSWNIWAERQRTVSGTSGFLLARTQFLKETG
WRDYGPFSEAEFSLRLWRANARVKLVNSGIRHGYHYAVDPPSEREEEVKR
YAGPFCEQVAQLLKVKQVKSVAVSSATVHCSERWFRRKYSKYRWRFLNSF
VQW*

spliced messenger RNA

>Ggra1356.t1 ID=Ggra1356.t1|Name=Ggra1356.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000092_pilon:353216..355027- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCACGGCACACCTCGAAACAGTTCCGTACTAGATTAGCGCTGTT
TCTAGTATTGTTATCGATTCTACTCACCGTCATATACGAGGTTGATATCA
TTCAGCTTTCTTCTCGATCTCTAAGTGGACCACTAATATCCGCCGTCACA
TCGACATGGACACGAGAGCAATGCCATTTACTCGCCATGATTCCCGTCTC
GCCCGCCGAGATACAAGCCGGTACAATTCGTACGTGGTATTCTACAATCT
CATCGAACCTTTCCACCATTGTGTGTTGCGTTGCTGTGATTCGTTCGGAA
CGTCCTCATGCCCAACTTGTACGCAACAACGACTCGTGCGACACGTTACA
TGTTCCCATGGTTCGACCGGATGATTATCTCTCCTTGTCAGAAAAGGTGA
AACTGGGTATCACCCATGCGCTTTCTTACTATGACTTCAACTGGGTGCTC
AAGACGGACTCCGATTCGTTTGTCTGTTTTACGCGCGTGCTTCGATTACT
CAGCAACTTTGACCCTGCCGGAATTGTACATGTGGGACGCTCAGAGTCTA
CTAACTTTCTAAAGCCTGACCCAACCCACAAATGGTACGACCCAGGTCTA
ACTGACGTGCTACACAATCCTCGACAGCACATCGAAAAAGGCAGCGTTAT
GCACCCGCCGTACATGCAGGGAGCTGGTTACGTCGTATCCCGTGGGGCAC
TAAAAGCGTTAAACAAAGTGAACAAACTGCTGAGATACAGTCCAATCGAA
GATATCATGATAGGAGGTTGGTTGATAGCTTTTGCTACACATCGAGCTTC
GATGGGTTTAGATCTTTGGGCGTATCGCCCACATTGCTATTTGCAGCCCT
TTGACTACATTTCTCACAAGCGAAAGGGCAAAAACAAGTTGGAGGAGTGT
ACCAGGAATAATCATCGCTGTCATGAAGTTTCTGAGGGGGATGATGTCGA
TGTGCGACAAGTGGCGTTCTTGATTGAGGTGGATTTCTCAAACAAAACAA
GAGCGTTCATAGACGTTTATGAAAGCATTCGCGCTGCTTTTCCAAACAAC
GAGGTGATTATTGGTGATACTTCAAGTTCGGATTCCGCCATGAAGCGATT
CATGTTCGCAAGAAGCGATGATAATGTGAAGGTGTTGTGGTTGAGGGAAA
CGGCTAGATCTGTTGTACTGAATGAGCTGGTTTCGAATACGGTTTCGCCA
TTTTTGTGTGTTCTAAGCGTGGAGCAGAAAATGTCGTGGGAAACAATGAT
AGCGCGAATGCTACGCCCCGTATGGAATGATGAAGCAGACGTAACATCCG
GCTTCCTTGTGTTCAATCACAATCGCTTACATTCTGACCAAGGTCTATTT
CCGAACGGACACACAATTGCACAGAACAATAGCGAAGTGGCATTCGAGCA
GGTAGAAACGTCATGGAATATCTGGGCGGAGCGGCAACGAACGGTGAGCG
GAACAAGCGGATTTCTACTAGCGCGCACACAGTTTCTGAAGGAAACGGGC
TGGAGAGACTATGGTCCGTTCTCGGAGGCGGAGTTTTCGCTGCGGCTATG
GCGGGCTAACGCTAGGGTGAAGCTGGTGAACAGCGGGATTCGTCACGGGT
ATCACTACGCCGTTGATCCGCCGTCGGAACGGGAGGAGGAGGTGAAGCGG
TACGCGGGGCCGTTTTGCGAGCAGGTTGCTCAGCTGTTGAAAGTGAAACA
GGTGAAGAGTGTGGCTGTTTCGAGCGCCACGGTGCATTGTTCGGAGCGAT
GGTTCCGCAGAAAGTACTCCAAGTACCGGTGGAGATTTCTCAACTCGTTC
GTTCAGTGGTGA

protein sequence of Ggra1356.t1

>Ggra1356.t1 ID=Ggra1356.t1|Name=Ggra1356.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=604bp
MKARHTSKQFRTRLALFLVLLSILLTVIYEVDIIQLSSRSLSGPLISAVT
STWTREQCHLLAMIPVSPAEIQAGTIRTWYSTISSNLSTIVCCVAVIRSE
RPHAQLVRNNDSCDTLHVPMVRPDDYLSLSEKVKLGITHALSYYDFNWVL
KTDSDSFVCFTRVLRLLSNFDPAGIVHVGRSESTNFLKPDPTHKWYDPGL
TDVLHNPRQHIEKGSVMHPPYMQGAGYVVSRGALKALNKVNKLLRYSPIE
DIMIGGWLIAFATHRASMGLDLWAYRPHCYLQPFDYISHKRKGKNKLEEC
TRNNHRCHEVSEGDDVDVRQVAFLIEVDFSNKTRAFIDVYESIRAAFPNN
EVIIGDTSSSDSAMKRFMFARSDDNVKVLWLRETARSVVLNELVSNTVSP
FLCVLSVEQKMSWETMIARMLRPVWNDEADVTSGFLVFNHNRLHSDQGLF
PNGHTIAQNNSEVAFEQVETSWNIWAERQRTVSGTSGFLLARTQFLKETG
WRDYGPFSEAEFSLRLWRANARVKLVNSGIRHGYHYAVDPPSEREEEVKR
YAGPFCEQVAQLLKVKQVKSVAVSSATVHCSERWFRRKYSKYRWRFLNSF
VQW*

mRNA from alignment at tig00000092_pilon:353216..355027-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1356.t1 ID=Ggra1356.t1|Name=Ggra1356.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000092_pilon:353216..355027- (Gracilaria gracilis GNS1m male)
ATGAAGGCACGGCACACCTCGAAACAGTTCCGTACTAGATTAGCGCTGTT
TCTAGTATTGTTATCGATTCTACTCACCGTCATATACGAGGTTGATATCA
TTCAGCTTTCTTCTCGATCTCTAAGTGGACCACTAATATCCGCCGTCACA
TCGACATGGACACGAGAGCAATGCCATTTACTCGCCATGATTCCCGTCTC
GCCCGCCGAGATACAAGCCGGTACAATTCGTACGTGGTATTCTACAATCT
CATCGAACCTTTCCACCATTGTGTGTTGCGTTGCTGTGATTCGTTCGGAA
CGTCCTCATGCCCAACTTGTACGCAACAACGACTCGTGCGACACGTTACA
TGTTCCCATGGTTCGACCGGATGATTATCTCTCCTTGTCAGAAAAGGTGA
AACTGGGTATCACCCATGCGCTTTCTTACTATGACTTCAACTGGGTGCTC
AAGACGGACTCCGATTCGTTTGTCTGTTTTACGCGCGTGCTTCGATTACT
CAGCAACTTTGACCCTGCCGGAATTGTACATGTGGGACGCTCAGAGTCTA
CTAACTTTCTAAAGCCTGACCCAACCCACAAATGGTACGACCCAGGTCTA
ACTGACGTGCTACACAATCCTCGACAGCACATCGAAAAAGGCAGCGTTAT
GCACCCGCCGTACATGCAGGGAGCTGGTTACGTCGTATCCCGTGGGGCAC
TAAAAGCGTTAAACAAAGTGAACAAACTGCTGAGATACAGTCCAATCGAA
GATATCATGATAGGAGGTTGGTTGATAGCTTTTGCTACACATCGAGCTTC
GATGGGTTTAGATCTTTGGGCGTATCGCCCACATTGCTATTTGCAGCCCT
TTGACTACATTTCTCACAAGCGAAAGGGCAAAAACAAGTTGGAGGAGTGT
ACCAGGAATAATCATCGCTGTCATGAAGTTTCTGAGGGGGATGATGTCGA
TGTGCGACAAGTGGCGTTCTTGATTGAGGTGGATTTCTCAAACAAAACAA
GAGCGTTCATAGACGTTTATGAAAGCATTCGCGCTGCTTTTCCAAACAAC
GAGGTGATTATTGGTGATACTTCAAGTTCGGATTCCGCCATGAAGCGATT
CATGTTCGCAAGAAGCGATGATAATGTGAAGGTGTTGTGGTTGAGGGAAA
CGGCTAGATCTGTTGTACTGAATGAGCTGGTTTCGAATACGGTTTCGCCA
TTTTTGTGTGTTCTAAGCGTGGAGCAGAAAATGTCGTGGGAAACAATGAT
AGCGCGAATGCTACGCCCCGTATGGAATGATGAAGCAGACGTAACATCCG
GCTTCCTTGTGTTCAATCACAATCGCTTACATTCTGACCAAGGTCTATTT
CCGAACGGACACACAATTGCACAGAACAATAGCGAAGTGGCATTCGAGCA
GGTAGAAACGTCATGGAATATCTGGGCGGAGCGGCAACGAACGGTGAGCG
GAACAAGCGGATTTCTACTAGCGCGCACACAGTTTCTGAAGGAAACGGGC
TGGAGAGACTATGGTCCGTTCTCGGAGGCGGAGTTTTCGCTGCGGCTATG
GCGGGCTAACGCTAGGGTGAAGCTGGTGAACAGCGGGATTCGTCACGGGT
ATCACTACGCCGTTGATCCGCCGTCGGAACGGGAGGAGGAGGTGAAGCGG
TACGCGGGGCCGTTTTGCGAGCAGGTTGCTCAGCTGTTGAAAGTGAAACA
GGTGAAGAGTGTGGCTGTTTCGAGCGCCACGGTGCATTGTTCGGAGCGAT
GGTTCCGCAGAAAGTACTCCAAGTACCGGTGGAGATTTCTCAACTCGTTC
GTTCAGTGGTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:353216..355027-

>Ggra1356.t1 ID=Ggra1356.t1|Name=Ggra1356.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00000092_pilon:353216..355027- (Gracilaria gracilis GNS1m male)
ATGAAGGCACGGCACACCTCGAAACAGTTCCGTACTAGATTAGCGCTGTT
TCTAGTATTGTTATCGATTCTACTCACCGTCATATACGAGGTTGATATCA
TTCAGCTTTCTTCTCGATCTCTAAGTGGACCACTAATATCCGCCGTCACA
TCGACATGGACACGAGAGCAATGCCATTTACTCGCCATGATTCCCGTCTC
GCCCGCCGAGATACAAGCCGGTACAATTCGTACGTGGTATTCTACAATCT
CATCGAACCTTTCCACCATTGTGTGTTGCGTTGCTGTGATTCGTTCGGAA
CGTCCTCATGCCCAACTTGTACGCAACAACGACTCGTGCGACACGTTACA
TGTTCCCATGGTTCGACCGGATGATTATCTCTCCTTGTCAGAAAAGGTGA
AACTGGGTATCACCCATGCGCTTTCTTACTATGACTTCAACTGGGTGCTC
AAGACGGACTCCGATTCGTTTGTCTGTTTTACGCGCGTGCTTCGATTACT
CAGCAACTTTGACCCTGCCGGAATTGTACATGTGGGACGCTCAGAGTCTA
CTAACTTTCTAAAGCCTGACCCAACCCACAAATGGTACGACCCAGGTCTA
ACTGACGTGCTACACAATCCTCGACAGCACATCGAAAAAGGCAGCGTTAT
GCACCCGCCGTACATGCAGGGAGCTGGTTACGTCGTATCCCGTGGGGCAC
TAAAAGCGTTAAACAAAGTGAACAAACTGCTGAGATACAGTCCAATCGAA
GATATCATGATAGGAGGTTGGTTGATAGCTTTTGCTACACATCGAGCTTC
GATGGGTTTAGATCTTTGGGCGTATCGCCCACATTGCTATTTGCAGCCCT
TTGACTACATTTCTCACAAGCGAAAGGGCAAAAACAAGTTGGAGGAGTGT
ACCAGGAATAATCATCGCTGTCATGAAGTTTCTGAGGGGGATGATGTCGA
TGTGCGACAAGTGGCGTTCTTGATTGAGGTGGATTTCTCAAACAAAACAA
GAGCGTTCATAGACGTTTATGAAAGCATTCGCGCTGCTTTTCCAAACAAC
GAGGTGATTATTGGTGATACTTCAAGTTCGGATTCCGCCATGAAGCGATT
CATGTTCGCAAGAAGCGATGATAATGTGAAGGTGTTGTGGTTGAGGGAAA
CGGCTAGATCTGTTGTACTGAATGAGCTGGTTTCGAATACGGTTTCGCCA
TTTTTGTGTGTTCTAAGCGTGGAGCAGAAAATGTCGTGGGAAACAATGAT
AGCGCGAATGCTACGCCCCGTATGGAATGATGAAGCAGACGTAACATCCG
GCTTCCTTGTGTTCAATCACAATCGCTTACATTCTGACCAAGGTCTATTT
CCGAACGGACACACAATTGCACAGAACAATAGCGAAGTGGCATTCGAGCA
GGTAGAAACGTCATGGAATATCTGGGCGGAGCGGCAACGAACGGTGAGCG
GAACAAGCGGATTTCTACTAGCGCGCACACAGTTTCTGAAGGAAACGGGC
TGGAGAGACTATGGTCCGTTCTCGGAGGCGGAGTTTTCGCTGCGGCTATG
GCGGGCTAACGCTAGGGTGAAGCTGGTGAACAGCGGGATTCGTCACGGGT
ATCACTACGCCGTTGATCCGCCGTCGGAACGGGAGGAGGAGGTGAAGCGG
TACGCGGGGCCGTTTTGCGAGCAGGTTGCTCAGCTGTTGAAAGTGAAACA
GGTGAAGAGTGTGGCTGTTTCGAGCGCCACGGTGCATTGTTCGGAGCGAT
GGTTCCGCAGAAAGTACTCCAAGTACCGGTGGAGATTTCTCAACTCGTTC
GTTCAGTGGTGA