Ggra1355.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1355.t1
Unique NameGgra1355.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:350518..351384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S29_195V6.1
PFAMsAla_racemase_N
Max annot lvl35493|Streptophyta
KEGG koko:K06997
Evalue1.16e-73
EggNOG OGsCOG0325@1|root,KOG3157@2759|Eukaryota,37IWY@33090|Viridiplantae,3GATZ@35493|Streptophyta
DescriptionPyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6
COG categoryU
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1355Ggra1355Gracilaria gracilis GNS1m malegenetig00000092_pilon 350518..351384 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1355.t1.start1Ggra1355.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 350518..350520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1355.t1.CDS1Ggra1355.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 350518..351384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1355.t1.exon1Ggra1355.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 350518..351384 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1355.t1.stop1Ggra1355.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 351382..351384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1355.t1Ggra1355.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 350518..351384 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1355.t1 ID=Ggra1355.t1|Name=Ggra1355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MRNTSRPLLFTGSMLPSLTSNSTLKTFRIAASTARRVRYTTMSAESSLNA
TAASSSVAQALQNVRDRIRQLICAQDERHVELVAVSKTKPAELLKQAYDV
NQRHFGENYVQELVQKAAQMPQDVKWHFIGSLQSNKAKHLLTVPNLFVVE
SVDRQKTASALQKAAKNIGRTDKLNVMVQVNTSGEDSKSGCQPGQTAELA
AFVVEQCDALNLMGIMTIGAFDASDEPEAFRVLAAERDSVAERLKCDEND
LKLSMGMSADFEAAIKMGSDSVRVGSTIFGEREYANKQ*
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spliced messenger RNA

>Ggra1355.t1 ID=Ggra1355.t1|Name=Ggra1355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000092_pilon:350518..351384+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAACACTTCCCGCCCGCTTCTTTTCACGGGTTCCATGCTGCCATC
ACTCACGTCCAACTCAACGCTCAAGACATTCAGAATCGCCGCTTCAACAG
CACGTCGCGTGCGATATACCACCATGAGTGCAGAGTCGTCTTTGAATGCC
ACTGCTGCTTCTTCCAGCGTTGCGCAGGCGCTTCAGAACGTGCGCGATCG
AATTAGACAACTGATTTGCGCACAGGATGAGCGCCATGTTGAATTGGTTG
CCGTGTCCAAAACGAAACCTGCGGAGCTTCTGAAACAAGCTTACGACGTG
AATCAGCGTCATTTTGGAGAGAATTACGTACAGGAGTTGGTTCAGAAGGC
GGCGCAGATGCCACAAGACGTCAAATGGCACTTCATTGGTTCCTTGCAGT
CAAACAAAGCGAAACATCTATTGACAGTTCCGAATCTGTTCGTGGTCGAA
AGCGTTGACAGACAGAAGACGGCGTCTGCGCTGCAAAAAGCAGCAAAGAA
CATTGGCAGAACGGACAAGCTGAATGTCATGGTGCAAGTTAACACGTCCG
GCGAGGATTCCAAGTCGGGGTGCCAACCTGGGCAGACGGCTGAGCTGGCC
GCGTTCGTGGTGGAGCAATGCGACGCGTTGAATCTGATGGGCATTATGAC
GATTGGCGCGTTCGATGCTTCGGACGAACCGGAGGCGTTTCGAGTGCTTG
CTGCCGAGCGCGACTCGGTGGCTGAGAGGTTGAAATGCGACGAGAACGAT
TTGAAACTGTCGATGGGAATGAGCGCCGATTTCGAAGCTGCCATCAAAAT
GGGAAGCGATTCTGTGAGAGTAGGAAGCACAATCTTTGGAGAAAGAGAAT
ACGCGAACAAACAGTAA
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protein sequence of Ggra1355.t1

>Ggra1355.t1 ID=Ggra1355.t1|Name=Ggra1355.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MRNTSRPLLFTGSMLPSLTSNSTLKTFRIAASTARRVRYTTMSAESSLNA
TAASSSVAQALQNVRDRIRQLICAQDERHVELVAVSKTKPAELLKQAYDV
NQRHFGENYVQELVQKAAQMPQDVKWHFIGSLQSNKAKHLLTVPNLFVVE
SVDRQKTASALQKAAKNIGRTDKLNVMVQVNTSGEDSKSGCQPGQTAELA
AFVVEQCDALNLMGIMTIGAFDASDEPEAFRVLAAERDSVAERLKCDEND
LKLSMGMSADFEAAIKMGSDSVRVGSTIFGEREYANKQ*
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mRNA from alignment at tig00000092_pilon:350518..351384+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1355.t1 ID=Ggra1355.t1|Name=Ggra1355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000092_pilon:350518..351384+ (Gracilaria gracilis GNS1m male)
ATGCGCAACACTTCCCGCCCGCTTCTTTTCACGGGTTCCATGCTGCCATC
ACTCACGTCCAACTCAACGCTCAAGACATTCAGAATCGCCGCTTCAACAG
CACGTCGCGTGCGATATACCACCATGAGTGCAGAGTCGTCTTTGAATGCC
ACTGCTGCTTCTTCCAGCGTTGCGCAGGCGCTTCAGAACGTGCGCGATCG
AATTAGACAACTGATTTGCGCACAGGATGAGCGCCATGTTGAATTGGTTG
CCGTGTCCAAAACGAAACCTGCGGAGCTTCTGAAACAAGCTTACGACGTG
AATCAGCGTCATTTTGGAGAGAATTACGTACAGGAGTTGGTTCAGAAGGC
GGCGCAGATGCCACAAGACGTCAAATGGCACTTCATTGGTTCCTTGCAGT
CAAACAAAGCGAAACATCTATTGACAGTTCCGAATCTGTTCGTGGTCGAA
AGCGTTGACAGACAGAAGACGGCGTCTGCGCTGCAAAAAGCAGCAAAGAA
CATTGGCAGAACGGACAAGCTGAATGTCATGGTGCAAGTTAACACGTCCG
GCGAGGATTCCAAGTCGGGGTGCCAACCTGGGCAGACGGCTGAGCTGGCC
GCGTTCGTGGTGGAGCAATGCGACGCGTTGAATCTGATGGGCATTATGAC
GATTGGCGCGTTCGATGCTTCGGACGAACCGGAGGCGTTTCGAGTGCTTG
CTGCCGAGCGCGACTCGGTGGCTGAGAGGTTGAAATGCGACGAGAACGAT
TTGAAACTGTCGATGGGAATGAGCGCCGATTTCGAAGCTGCCATCAAAAT
GGGAAGCGATTCTGTGAGAGTAGGAAGCACAATCTTTGGAGAAAGAGAAT
ACGCGAACAAACAGTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:350518..351384+

>Ggra1355.t1 ID=Ggra1355.t1|Name=Ggra1355.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000092_pilon:350518..351384+ (Gracilaria gracilis GNS1m male)
ATGCGCAACACTTCCCGCCCGCTTCTTTTCACGGGTTCCATGCTGCCATC
ACTCACGTCCAACTCAACGCTCAAGACATTCAGAATCGCCGCTTCAACAG
CACGTCGCGTGCGATATACCACCATGAGTGCAGAGTCGTCTTTGAATGCC
ACTGCTGCTTCTTCCAGCGTTGCGCAGGCGCTTCAGAACGTGCGCGATCG
AATTAGACAACTGATTTGCGCACAGGATGAGCGCCATGTTGAATTGGTTG
CCGTGTCCAAAACGAAACCTGCGGAGCTTCTGAAACAAGCTTACGACGTG
AATCAGCGTCATTTTGGAGAGAATTACGTACAGGAGTTGGTTCAGAAGGC
GGCGCAGATGCCACAAGACGTCAAATGGCACTTCATTGGTTCCTTGCAGT
CAAACAAAGCGAAACATCTATTGACAGTTCCGAATCTGTTCGTGGTCGAA
AGCGTTGACAGACAGAAGACGGCGTCTGCGCTGCAAAAAGCAGCAAAGAA
CATTGGCAGAACGGACAAGCTGAATGTCATGGTGCAAGTTAACACGTCCG
GCGAGGATTCCAAGTCGGGGTGCCAACCTGGGCAGACGGCTGAGCTGGCC
GCGTTCGTGGTGGAGCAATGCGACGCGTTGAATCTGATGGGCATTATGAC
GATTGGCGCGTTCGATGCTTCGGACGAACCGGAGGCGTTTCGAGTGCTTG
CTGCCGAGCGCGACTCGGTGGCTGAGAGGTTGAAATGCGACGAGAACGAT
TTGAAACTGTCGATGGGAATGAGCGCCGATTTCGAAGCTGCCATCAAAAT
GGGAAGCGATTCTGTGAGAGTAGGAAGCACAATCTTTGGAGAAAGAGAAT
ACGCGAACAAACAGTAA
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