Ggra1354.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1354.t1
Unique NameGgra1354.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:349503..350081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1354Ggra1354Gracilaria gracilis GNS1m malegenetig00000092_pilon 349503..350081 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1354.t1.stop1Ggra1354.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 349503..349505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1354.t1.CDS1Ggra1354.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 349503..350081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1354.t1.exon1Ggra1354.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 349503..350081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1354.t1.start1Ggra1354.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 350079..350081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1354.t1Ggra1354.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 349503..350081 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1354.t1 ID=Ggra1354.t1|Name=Ggra1354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=193bp
MCSPCPLPPHLEERVRESQRRFINYMKKQANAIAYEKVPKPVKTTCKWTE
DQRKVNNSLSMKRSRVRKEEELRIVLEEYNTLRGKKNRLLEQYRSRFGST
VADVLQGYIAASQALSINQSAQPVQVVQNARFVQPVQVVQDDQSASSPPQ
FSADDVADPLEEPLHPTPDPVLHLLVLLPECPPNPNWPSPPT*
back to top

spliced messenger RNA

>Ggra1354.t1 ID=Ggra1354.t1|Name=Ggra1354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000092_pilon:349503..350081- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTCACCCTGTCCGCTTCCGCCTCATCTGGAGGAAAGAGTGAGAGA
GTCGCAGCGTCGCTTCATCAACTATATGAAGAAGCAAGCCAATGCAATTG
CGTATGAGAAAGTTCCCAAACCCGTGAAGACCACTTGCAAATGGACTGAA
GATCAACGCAAAGTTAACAATTCTCTCAGTATGAAGCGTTCTAGAGTGAG
AAAGGAAGAGGAGCTGAGGATTGTCCTCGAAGAGTACAACACTTTGCGCG
GAAAGAAGAATAGGCTGTTGGAACAATATCGTTCTCGATTCGGGAGCACG
GTTGCTGATGTACTTCAGGGATATATTGCTGCTTCGCAAGCGCTGTCCAT
AAATCAATCGGCGCAGCCTGTTCAGGTTGTGCAGAATGCGCGGTTTGTAC
AGCCTGTCCAGGTTGTGCAGGATGACCAATCTGCAAGCTCGCCTCCTCAA
TTTAGTGCTGATGACGTAGCAGACCCTCTTGAGGAACCTCTTCATCCAAC
ACCTGACCCCGTCCTTCATCTACTTGTGCTGCTTCCTGAGTGTCCTCCGA
ACCCGAATTGGCCTTCTCCACCCACTTGA
back to top

protein sequence of Ggra1354.t1

>Ggra1354.t1 ID=Ggra1354.t1|Name=Ggra1354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MCSPCPLPPHLEERVRESQRRFINYMKKQANAIAYEKVPKPVKTTCKWTE
DQRKVNNSLSMKRSRVRKEEELRIVLEEYNTLRGKKNRLLEQYRSRFGST
VADVLQGYIAASQALSINQSAQPVQVVQNARFVQPVQVVQDDQSASSPPQ
FSADDVADPLEEPLHPTPDPVLHLLVLLPECPPNPNWPSPPT*
back to top

mRNA from alignment at tig00000092_pilon:349503..350081-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1354.t1 ID=Ggra1354.t1|Name=Ggra1354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000092_pilon:349503..350081- (Gracilaria gracilis GNS1m male)
ATGTGTTCACCCTGTCCGCTTCCGCCTCATCTGGAGGAAAGAGTGAGAGA
GTCGCAGCGTCGCTTCATCAACTATATGAAGAAGCAAGCCAATGCAATTG
CGTATGAGAAAGTTCCCAAACCCGTGAAGACCACTTGCAAATGGACTGAA
GATCAACGCAAAGTTAACAATTCTCTCAGTATGAAGCGTTCTAGAGTGAG
AAAGGAAGAGGAGCTGAGGATTGTCCTCGAAGAGTACAACACTTTGCGCG
GAAAGAAGAATAGGCTGTTGGAACAATATCGTTCTCGATTCGGGAGCACG
GTTGCTGATGTACTTCAGGGATATATTGCTGCTTCGCAAGCGCTGTCCAT
AAATCAATCGGCGCAGCCTGTTCAGGTTGTGCAGAATGCGCGGTTTGTAC
AGCCTGTCCAGGTTGTGCAGGATGACCAATCTGCAAGCTCGCCTCCTCAA
TTTAGTGCTGATGACGTAGCAGACCCTCTTGAGGAACCTCTTCATCCAAC
ACCTGACCCCGTCCTTCATCTACTTGTGCTGCTTCCTGAGTGTCCTCCGA
ACCCGAATTGGCCTTCTCCACCCACTTGA
back to top

Coding sequence (CDS) from alignment at tig00000092_pilon:349503..350081-

>Ggra1354.t1 ID=Ggra1354.t1|Name=Ggra1354.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00000092_pilon:349503..350081- (Gracilaria gracilis GNS1m male)
ATGTGTTCACCCTGTCCGCTTCCGCCTCATCTGGAGGAAAGAGTGAGAGA
GTCGCAGCGTCGCTTCATCAACTATATGAAGAAGCAAGCCAATGCAATTG
CGTATGAGAAAGTTCCCAAACCCGTGAAGACCACTTGCAAATGGACTGAA
GATCAACGCAAAGTTAACAATTCTCTCAGTATGAAGCGTTCTAGAGTGAG
AAAGGAAGAGGAGCTGAGGATTGTCCTCGAAGAGTACAACACTTTGCGCG
GAAAGAAGAATAGGCTGTTGGAACAATATCGTTCTCGATTCGGGAGCACG
GTTGCTGATGTACTTCAGGGATATATTGCTGCTTCGCAAGCGCTGTCCAT
AAATCAATCGGCGCAGCCTGTTCAGGTTGTGCAGAATGCGCGGTTTGTAC
AGCCTGTCCAGGTTGTGCAGGATGACCAATCTGCAAGCTCGCCTCCTCAA
TTTAGTGCTGATGACGTAGCAGACCCTCTTGAGGAACCTCTTCATCCAAC
ACCTGACCCCGTCCTTCATCTACTTGTGCTGCTTCCTGAGTGTCCTCCGA
ACCCGAATTGGCCTTCTCCACCCACTTGA
back to top