Ggra1352.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1352.t1
Unique Name	Ggra1352.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	710

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:342884..345013 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1352	Ggra1352	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 342884..345013 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1352.t1.stop1	Ggra1352.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 342884..342886 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1352.t1.CDS1	Ggra1352.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 342884..345013 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1352.t1.exon1	Ggra1352.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 342884..345013 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1352.t1.start1	Ggra1352.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 345011..345013 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1352.t1	Ggra1352.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 342884..345013 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:342884..345013-
coding sequence from alignment at tig00000092_pilon:342884..345013-

mRNA sequence

>Ggra1352.t1 ID=Ggra1352.t1|Name=Ggra1352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=710bp
MQVVNERSEAPERSNIYNGYGLQIEEQDHGASMIPPTSRDVEVIEETQNV
RRRSRIGRGMLKPFKLIGTGVKKAVRCCFQCGASERAGVVSVVEIVEDRN
LGPDMNAHHEARVSPVEHAVEKNESKGDGDELHEDSAGSLGNKGRADTGS
DAQPSSRSSSEEEEKGGRENPGLREMEGAVREIESLTTPVVVNKACVVTR
STAEGGSHQMLRSTSSSEVAATPSSDVAASSSWSFDASSSSDHVTSSSSD
VAASSSSGVPGSYSSEGVASSDSQSDEDGGAFSEARTPEVQSTKEDSSEY
ESSDLGELGQVLIEEEVVMTSDHENLRSDEGSEETALTNDGRSVVNQDDS
YLQFCASDLKEPSDGPEEESSDRLRSLVSGENESDRSSQHRSEDSLTEPG
EESSTSTSTSDSFDSNQVGESFENEDEVGDMQSSASSGENQAARLSTGNR
EEVASRSSSNPEPDSRSSSQQTVEEGRSHGESYEDQEGDSMFDFVLSKLR
SVLTSFRRGNSADEDQNSNESLAERITSNENESSSNGSEGEGRTASSTRS
SPQLSSSAECSLSQSHSGSGDALESANSGEGLEGQGSGDHIQQVSVSQNT
SHHELDGDHDAQSVPRTSASSAGSFEDSSNSSQIASSGFADSFEDSDYSS
QVAPSSSAGSFESSNHVSQPSSLASAESEVDSDHSSQVVTSSSADMLTDS
DEIEFAESD*

spliced messenger RNA

>Ggra1352.t1 ID=Ggra1352.t1|Name=Ggra1352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00000092_pilon:342884..345013- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTTGTGAATGAAAGAAGTGAGGCTCCTGAGCGCTCGAATATTTA
CAATGGCTATGGCTTGCAAATTGAAGAACAGGACCACGGGGCTTCCATGA
TCCCTCCGACAAGCAGAGATGTAGAAGTCATCGAAGAAACACAGAATGTA
AGACGCCGCAGCAGGATTGGTCGCGGAATGTTGAAACCGTTCAAGCTCAT
TGGCACTGGAGTGAAGAAAGCTGTGCGATGCTGTTTTCAATGTGGTGCCA
GCGAGAGGGCCGGTGTTGTTTCTGTGGTTGAGATCGTCGAAGATCGAAAC
CTAGGGCCTGACATGAACGCCCATCATGAAGCTCGTGTTTCTCCGGTTGA
ACATGCAGTTGAGAAAAACGAGAGCAAAGGTGATGGTGACGAACTTCATG
AAGACAGTGCAGGGTCTTTGGGAAACAAAGGTCGTGCAGATACGGGCTCT
GATGCACAGCCCTCTTCGAGGAGTTCGTCGGAGGAAGAAGAAAAGGGTGG
ACGTGAAAACCCAGGTTTAAGAGAAATGGAGGGAGCTGTTCGGGAAATCG
AAAGTCTCACCACCCCCGTAGTTGTCAATAAGGCTTGCGTGGTAACCAGG
TCAACAGCGGAGGGTGGTAGCCACCAGATGTTAAGGTCCACATCTTCATC
AGAGGTTGCTGCCACACCTTCATCGGACGTTGCTGCCTCATCTTCATGGA
GCTTTGACGCTTCATCTTCGTCGGACCATGTGACGTCATCTTCATCAGAC
GTTGCCGCTTCATCATCGTCCGGCGTTCCTGGTTCATATTCATCGGAAGG
CGTTGCTTCATCAGACAGCCAAAGCGACGAGGATGGGGGCGCATTTTCAG
AAGCCCGAACACCCGAGGTCCAAAGCACCAAAGAGGACTCCTCTGAATAC
GAGAGTAGTGACCTCGGTGAACTGGGACAAGTTCTGATCGAAGAGGAAGT
AGTGATGACCTCTGATCATGAGAATCTGCGCTCAGATGAGGGCAGTGAGG
AGACGGCACTCACAAATGACGGAAGAAGTGTCGTCAACCAGGACGACAGC
TACCTTCAATTCTGCGCGAGTGACCTGAAGGAACCGTCCGATGGTCCGGA
AGAGGAATCCAGTGACCGTCTGCGCAGTTTGGTCTCGGGGGAAAATGAGT
CTGACCGCAGCTCACAACACAGGTCAGAAGATTCCCTCACAGAACCTGGT
GAAGAATCCTCTACATCGACGTCGACGAGCGACTCTTTTGACTCCAATCA
AGTCGGAGAGTCCTTCGAGAATGAGGATGAAGTGGGGGATATGCAAAGCA
GTGCCAGTAGCGGGGAAAACCAGGCGGCCAGGTTAAGCACCGGTAATAGA
GAGGAGGTCGCTTCGCGGTCGTCAAGTAATCCCGAACCCGACAGCAGGAG
CTCATCCCAGCAAACCGTCGAGGAAGGAAGAAGTCATGGCGAGTCCTATG
AAGATCAAGAAGGGGATTCTATGTTTGATTTTGTTCTCTCAAAGTTACGT
TCCGTTTTAACAAGCTTTCGCCGTGGGAACAGCGCAGATGAAGACCAAAA
TTCCAATGAATCACTCGCTGAACGTATCACTAGTAACGAAAACGAAAGCT
CTTCAAACGGTTCGGAGGGCGAGGGTAGGACTGCAAGTTCCACTCGGTCA
TCTCCACAACTTTCTTCTTCTGCAGAGTGTAGCTTGTCCCAGAGCCACTC
TGGCTCAGGAGACGCTTTGGAATCCGCAAACAGTGGAGAAGGTCTAGAAG
GACAAGGATCTGGTGATCACATTCAACAAGTTTCTGTCTCTCAGAACACC
TCCCATCATGAGCTCGATGGTGACCATGACGCTCAGTCTGTGCCACGAAC
CAGTGCCTCAAGTGCTGGGTCCTTTGAAGATTCGAGTAATTCTTCCCAGA
TAGCGTCGTCGGGTTTTGCTGACTCATTTGAAGACTCGGACTATTCTTCG
CAGGTGGCCCCTTCTTCCAGCGCTGGGTCGTTTGAAAGCTCGAATCATGT
TTCTCAGCCGTCGTCGCTTGCCAGCGCTGAATCAGAAGTAGATTCCGATC
ACTCGTCACAGGTTGTGACTTCATCCTCTGCAGACATGTTAACTGACTCT
GATGAAATAGAGTTTGCGGAATCTGACTAA

protein sequence of Ggra1352.t1

>Ggra1352.t1 ID=Ggra1352.t1|Name=Ggra1352.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=710bp
MQVVNERSEAPERSNIYNGYGLQIEEQDHGASMIPPTSRDVEVIEETQNV
RRRSRIGRGMLKPFKLIGTGVKKAVRCCFQCGASERAGVVSVVEIVEDRN
LGPDMNAHHEARVSPVEHAVEKNESKGDGDELHEDSAGSLGNKGRADTGS
DAQPSSRSSSEEEEKGGRENPGLREMEGAVREIESLTTPVVVNKACVVTR
STAEGGSHQMLRSTSSSEVAATPSSDVAASSSWSFDASSSSDHVTSSSSD
VAASSSSGVPGSYSSEGVASSDSQSDEDGGAFSEARTPEVQSTKEDSSEY
ESSDLGELGQVLIEEEVVMTSDHENLRSDEGSEETALTNDGRSVVNQDDS
YLQFCASDLKEPSDGPEEESSDRLRSLVSGENESDRSSQHRSEDSLTEPG
EESSTSTSTSDSFDSNQVGESFENEDEVGDMQSSASSGENQAARLSTGNR
EEVASRSSSNPEPDSRSSSQQTVEEGRSHGESYEDQEGDSMFDFVLSKLR
SVLTSFRRGNSADEDQNSNESLAERITSNENESSSNGSEGEGRTASSTRS
SPQLSSSAECSLSQSHSGSGDALESANSGEGLEGQGSGDHIQQVSVSQNT
SHHELDGDHDAQSVPRTSASSAGSFEDSSNSSQIASSGFADSFEDSDYSS
QVAPSSSAGSFESSNHVSQPSSLASAESEVDSDHSSQVVTSSSADMLTDS
DEIEFAESD*

mRNA from alignment at tig00000092_pilon:342884..345013-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1352.t1 ID=Ggra1352.t1|Name=Ggra1352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00000092_pilon:342884..345013- (Gracilaria gracilis GNS1m male)
ATGCAAGTTGTGAATGAAAGAAGTGAGGCTCCTGAGCGCTCGAATATTTA
CAATGGCTATGGCTTGCAAATTGAAGAACAGGACCACGGGGCTTCCATGA
TCCCTCCGACAAGCAGAGATGTAGAAGTCATCGAAGAAACACAGAATGTA
AGACGCCGCAGCAGGATTGGTCGCGGAATGTTGAAACCGTTCAAGCTCAT
TGGCACTGGAGTGAAGAAAGCTGTGCGATGCTGTTTTCAATGTGGTGCCA
GCGAGAGGGCCGGTGTTGTTTCTGTGGTTGAGATCGTCGAAGATCGAAAC
CTAGGGCCTGACATGAACGCCCATCATGAAGCTCGTGTTTCTCCGGTTGA
ACATGCAGTTGAGAAAAACGAGAGCAAAGGTGATGGTGACGAACTTCATG
AAGACAGTGCAGGGTCTTTGGGAAACAAAGGTCGTGCAGATACGGGCTCT
GATGCACAGCCCTCTTCGAGGAGTTCGTCGGAGGAAGAAGAAAAGGGTGG
ACGTGAAAACCCAGGTTTAAGAGAAATGGAGGGAGCTGTTCGGGAAATCG
AAAGTCTCACCACCCCCGTAGTTGTCAATAAGGCTTGCGTGGTAACCAGG
TCAACAGCGGAGGGTGGTAGCCACCAGATGTTAAGGTCCACATCTTCATC
AGAGGTTGCTGCCACACCTTCATCGGACGTTGCTGCCTCATCTTCATGGA
GCTTTGACGCTTCATCTTCGTCGGACCATGTGACGTCATCTTCATCAGAC
GTTGCCGCTTCATCATCGTCCGGCGTTCCTGGTTCATATTCATCGGAAGG
CGTTGCTTCATCAGACAGCCAAAGCGACGAGGATGGGGGCGCATTTTCAG
AAGCCCGAACACCCGAGGTCCAAAGCACCAAAGAGGACTCCTCTGAATAC
GAGAGTAGTGACCTCGGTGAACTGGGACAAGTTCTGATCGAAGAGGAAGT
AGTGATGACCTCTGATCATGAGAATCTGCGCTCAGATGAGGGCAGTGAGG
AGACGGCACTCACAAATGACGGAAGAAGTGTCGTCAACCAGGACGACAGC
TACCTTCAATTCTGCGCGAGTGACCTGAAGGAACCGTCCGATGGTCCGGA
AGAGGAATCCAGTGACCGTCTGCGCAGTTTGGTCTCGGGGGAAAATGAGT
CTGACCGCAGCTCACAACACAGGTCAGAAGATTCCCTCACAGAACCTGGT
GAAGAATCCTCTACATCGACGTCGACGAGCGACTCTTTTGACTCCAATCA
AGTCGGAGAGTCCTTCGAGAATGAGGATGAAGTGGGGGATATGCAAAGCA
GTGCCAGTAGCGGGGAAAACCAGGCGGCCAGGTTAAGCACCGGTAATAGA
GAGGAGGTCGCTTCGCGGTCGTCAAGTAATCCCGAACCCGACAGCAGGAG
CTCATCCCAGCAAACCGTCGAGGAAGGAAGAAGTCATGGCGAGTCCTATG
AAGATCAAGAAGGGGATTCTATGTTTGATTTTGTTCTCTCAAAGTTACGT
TCCGTTTTAACAAGCTTTCGCCGTGGGAACAGCGCAGATGAAGACCAAAA
TTCCAATGAATCACTCGCTGAACGTATCACTAGTAACGAAAACGAAAGCT
CTTCAAACGGTTCGGAGGGCGAGGGTAGGACTGCAAGTTCCACTCGGTCA
TCTCCACAACTTTCTTCTTCTGCAGAGTGTAGCTTGTCCCAGAGCCACTC
TGGCTCAGGAGACGCTTTGGAATCCGCAAACAGTGGAGAAGGTCTAGAAG
GACAAGGATCTGGTGATCACATTCAACAAGTTTCTGTCTCTCAGAACACC
TCCCATCATGAGCTCGATGGTGACCATGACGCTCAGTCTGTGCCACGAAC
CAGTGCCTCAAGTGCTGGGTCCTTTGAAGATTCGAGTAATTCTTCCCAGA
TAGCGTCGTCGGGTTTTGCTGACTCATTTGAAGACTCGGACTATTCTTCG
CAGGTGGCCCCTTCTTCCAGCGCTGGGTCGTTTGAAAGCTCGAATCATGT
TTCTCAGCCGTCGTCGCTTGCCAGCGCTGAATCAGAAGTAGATTCCGATC
ACTCGTCACAGGTTGTGACTTCATCCTCTGCAGACATGTTAACTGACTCT
GATGAAATAGAGTTTGCGGAATCTGACTAA

Coding sequence (CDS) from alignment at tig00000092_pilon:342884..345013-

>Ggra1352.t1 ID=Ggra1352.t1|Name=Ggra1352.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2130bp|location=Sequence derived from alignment at tig00000092_pilon:342884..345013- (Gracilaria gracilis GNS1m male)
ATGCAAGTTGTGAATGAAAGAAGTGAGGCTCCTGAGCGCTCGAATATTTA
CAATGGCTATGGCTTGCAAATTGAAGAACAGGACCACGGGGCTTCCATGA
TCCCTCCGACAAGCAGAGATGTAGAAGTCATCGAAGAAACACAGAATGTA
AGACGCCGCAGCAGGATTGGTCGCGGAATGTTGAAACCGTTCAAGCTCAT
TGGCACTGGAGTGAAGAAAGCTGTGCGATGCTGTTTTCAATGTGGTGCCA
GCGAGAGGGCCGGTGTTGTTTCTGTGGTTGAGATCGTCGAAGATCGAAAC
CTAGGGCCTGACATGAACGCCCATCATGAAGCTCGTGTTTCTCCGGTTGA
ACATGCAGTTGAGAAAAACGAGAGCAAAGGTGATGGTGACGAACTTCATG
AAGACAGTGCAGGGTCTTTGGGAAACAAAGGTCGTGCAGATACGGGCTCT
GATGCACAGCCCTCTTCGAGGAGTTCGTCGGAGGAAGAAGAAAAGGGTGG
ACGTGAAAACCCAGGTTTAAGAGAAATGGAGGGAGCTGTTCGGGAAATCG
AAAGTCTCACCACCCCCGTAGTTGTCAATAAGGCTTGCGTGGTAACCAGG
TCAACAGCGGAGGGTGGTAGCCACCAGATGTTAAGGTCCACATCTTCATC
AGAGGTTGCTGCCACACCTTCATCGGACGTTGCTGCCTCATCTTCATGGA
GCTTTGACGCTTCATCTTCGTCGGACCATGTGACGTCATCTTCATCAGAC
GTTGCCGCTTCATCATCGTCCGGCGTTCCTGGTTCATATTCATCGGAAGG
CGTTGCTTCATCAGACAGCCAAAGCGACGAGGATGGGGGCGCATTTTCAG
AAGCCCGAACACCCGAGGTCCAAAGCACCAAAGAGGACTCCTCTGAATAC
GAGAGTAGTGACCTCGGTGAACTGGGACAAGTTCTGATCGAAGAGGAAGT
AGTGATGACCTCTGATCATGAGAATCTGCGCTCAGATGAGGGCAGTGAGG
AGACGGCACTCACAAATGACGGAAGAAGTGTCGTCAACCAGGACGACAGC
TACCTTCAATTCTGCGCGAGTGACCTGAAGGAACCGTCCGATGGTCCGGA
AGAGGAATCCAGTGACCGTCTGCGCAGTTTGGTCTCGGGGGAAAATGAGT
CTGACCGCAGCTCACAACACAGGTCAGAAGATTCCCTCACAGAACCTGGT
GAAGAATCCTCTACATCGACGTCGACGAGCGACTCTTTTGACTCCAATCA
AGTCGGAGAGTCCTTCGAGAATGAGGATGAAGTGGGGGATATGCAAAGCA
GTGCCAGTAGCGGGGAAAACCAGGCGGCCAGGTTAAGCACCGGTAATAGA
GAGGAGGTCGCTTCGCGGTCGTCAAGTAATCCCGAACCCGACAGCAGGAG
CTCATCCCAGCAAACCGTCGAGGAAGGAAGAAGTCATGGCGAGTCCTATG
AAGATCAAGAAGGGGATTCTATGTTTGATTTTGTTCTCTCAAAGTTACGT
TCCGTTTTAACAAGCTTTCGCCGTGGGAACAGCGCAGATGAAGACCAAAA
TTCCAATGAATCACTCGCTGAACGTATCACTAGTAACGAAAACGAAAGCT
CTTCAAACGGTTCGGAGGGCGAGGGTAGGACTGCAAGTTCCACTCGGTCA
TCTCCACAACTTTCTTCTTCTGCAGAGTGTAGCTTGTCCCAGAGCCACTC
TGGCTCAGGAGACGCTTTGGAATCCGCAAACAGTGGAGAAGGTCTAGAAG
GACAAGGATCTGGTGATCACATTCAACAAGTTTCTGTCTCTCAGAACACC
TCCCATCATGAGCTCGATGGTGACCATGACGCTCAGTCTGTGCCACGAAC
CAGTGCCTCAAGTGCTGGGTCCTTTGAAGATTCGAGTAATTCTTCCCAGA
TAGCGTCGTCGGGTTTTGCTGACTCATTTGAAGACTCGGACTATTCTTCG
CAGGTGGCCCCTTCTTCCAGCGCTGGGTCGTTTGAAAGCTCGAATCATGT
TTCTCAGCCGTCGTCGCTTGCCAGCGCTGAATCAGAAGTAGATTCCGATC
ACTCGTCACAGGTTGTGACTTCATCCTCTGCAGACATGTTAACTGACTCT
GATGAAATAGAGTTTGCGGAATCTGACTAA