Ggra1351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1351.t1
Unique NameGgra1351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:339868..341283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog944479.JQLX01000012_gene1135
PFAMsPHO4
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03306
KEGG TC2.A.20
Evalue2.07e-43
EggNOG OGsCOG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,42MYT@68525|delta/epsilon subdivisions,2WM6R@28221|Deltaproteobacteria,2M6XC@213113|Desulfurellales
DescriptionPhosphate transporter family
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1351Ggra1351Gracilaria gracilis GNS1m malegenetig00000092_pilon 339868..341283 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1351.t1.stop1Ggra1351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 339868..339870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1351.t1.CDS1Ggra1351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 339868..341283 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1351.t1.exon1Ggra1351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 339868..341283 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1351.t1.start1Ggra1351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 341281..341283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1351.t1Ggra1351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 339868..341283 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1351.t1 ID=Ggra1351.t1|Name=Ggra1351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=472bp
MIADPFILLSIGAIGAFGMLFVLGANDVANSVGVPIGCGALTTRMAIILA
AICNILGASLAGSRVAHTLSKGVSPSLAEDPSSHEAALAFLCVLLSAMTI
IFIGTVLAIPLSSTHAAVGAVAGAAMLLHGPGSLHWQKLYQIAAAWIISP
LLGCVLGFFLLHLTSLALRGKRYNYIVAPSLAGLTAAAVAGVLTDSLVQI
FGYEHPSTCSFLTGLTMAFALGFVGGWLVVNGEYEKLAMDTLPEHSADEA
PAKSGEKSADDCSDRSKQTPETPEEKVTNYGMVGLLRPKKIALTENSWYF
GGLLVTTVPALSFAHGSNDVSNGVGPFIMILRFYLLRSSDGKVDTIAHTL
LLAVLCTGGVAIALGLAIFGSRVIATIGGSGEKSLSSKPWTFARAFPAQF
AAACSVLVASSFGLPVSTSHAVVGAVVGVQLASASHVNWKTLTSILVGAG
LTPILAAITCIILLSILLVVL*
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spliced messenger RNA

>Ggra1351.t1 ID=Ggra1351.t1|Name=Ggra1351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000092_pilon:339868..341283- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCTGATCCGTTCATACTTCTTTCCATTGGAGCAATTGGCGCTTT
TGGAATGCTCTTCGTCCTTGGCGCTAACGATGTAGCAAATTCTGTCGGAG
TCCCCATCGGATGTGGGGCTCTCACCACACGGATGGCCATAATTCTGGCT
GCCATTTGTAATATTCTCGGCGCATCGCTCGCCGGTTCCCGAGTTGCGCA
CACGCTGTCAAAAGGTGTATCGCCCTCCCTCGCGGAAGATCCATCTTCCC
ATGAAGCCGCCTTAGCATTTCTGTGTGTGCTGCTCTCCGCAATGACGATT
ATCTTTATCGGAACCGTGCTGGCAATACCCCTGTCTTCGACGCATGCAGC
TGTCGGTGCAGTAGCGGGCGCTGCAATGCTACTGCATGGTCCAGGATCCT
TGCACTGGCAAAAGCTATATCAAATTGCCGCTGCTTGGATAATCTCCCCC
TTGTTAGGTTGTGTGTTAGGGTTCTTTCTACTCCACCTTACCAGTTTAGC
GCTCCGAGGAAAGCGTTATAACTACATTGTAGCGCCAAGTTTAGCAGGGC
TCACGGCCGCAGCAGTAGCAGGTGTGTTAACAGACTCGCTCGTTCAAATA
TTCGGTTACGAGCATCCATCCACATGTAGCTTCCTCACTGGTTTGACTAT
GGCTTTCGCGCTTGGTTTCGTTGGTGGATGGTTGGTCGTGAACGGTGAAT
ACGAGAAATTGGCTATGGATACACTTCCGGAACACTCCGCCGACGAAGCT
CCAGCAAAATCGGGTGAGAAATCTGCCGACGACTGTTCCGACCGTTCCAA
ACAAACCCCAGAAACCCCTGAAGAGAAGGTTACGAATTACGGAATGGTGG
GACTTCTGCGGCCAAAAAAGATTGCTCTGACGGAGAACTCTTGGTATTTT
GGCGGGCTACTTGTGACAACGGTACCAGCATTGTCATTCGCACACGGGAG
CAACGACGTGTCCAATGGAGTCGGTCCGTTCATAATGATCCTTCGCTTTT
ACCTTCTCAGAAGTAGCGATGGCAAAGTCGACACAATAGCACACACCCTT
TTGTTGGCCGTATTGTGTACGGGTGGTGTAGCAATTGCACTGGGATTGGC
CATTTTCGGATCAAGAGTGATTGCCACGATTGGGGGCAGCGGAGAAAAGT
CGCTCAGCTCTAAGCCATGGACTTTTGCAAGAGCTTTTCCAGCACAGTTC
GCGGCGGCTTGTTCAGTTTTGGTGGCTTCATCGTTTGGGCTTCCCGTCTC
GACTTCGCACGCGGTTGTGGGTGCGGTGGTTGGCGTGCAGTTGGCTAGTG
CGTCTCATGTGAACTGGAAAACATTGACAAGCATTCTTGTCGGGGCCGGT
TTGACACCGATTCTCGCGGCGATTACCTGCATCATTCTCCTGTCTATTCT
TCTTGTGGTGCTATAG
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protein sequence of Ggra1351.t1

>Ggra1351.t1 ID=Ggra1351.t1|Name=Ggra1351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=472bp
MIADPFILLSIGAIGAFGMLFVLGANDVANSVGVPIGCGALTTRMAIILA
AICNILGASLAGSRVAHTLSKGVSPSLAEDPSSHEAALAFLCVLLSAMTI
IFIGTVLAIPLSSTHAAVGAVAGAAMLLHGPGSLHWQKLYQIAAAWIISP
LLGCVLGFFLLHLTSLALRGKRYNYIVAPSLAGLTAAAVAGVLTDSLVQI
FGYEHPSTCSFLTGLTMAFALGFVGGWLVVNGEYEKLAMDTLPEHSADEA
PAKSGEKSADDCSDRSKQTPETPEEKVTNYGMVGLLRPKKIALTENSWYF
GGLLVTTVPALSFAHGSNDVSNGVGPFIMILRFYLLRSSDGKVDTIAHTL
LLAVLCTGGVAIALGLAIFGSRVIATIGGSGEKSLSSKPWTFARAFPAQF
AAACSVLVASSFGLPVSTSHAVVGAVVGVQLASASHVNWKTLTSILVGAG
LTPILAAITCIILLSILLVVL*
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mRNA from alignment at tig00000092_pilon:339868..341283-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1351.t1 ID=Ggra1351.t1|Name=Ggra1351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000092_pilon:339868..341283- (Gracilaria gracilis GNS1m male)
ATGATTGCTGATCCGTTCATACTTCTTTCCATTGGAGCAATTGGCGCTTT
TGGAATGCTCTTCGTCCTTGGCGCTAACGATGTAGCAAATTCTGTCGGAG
TCCCCATCGGATGTGGGGCTCTCACCACACGGATGGCCATAATTCTGGCT
GCCATTTGTAATATTCTCGGCGCATCGCTCGCCGGTTCCCGAGTTGCGCA
CACGCTGTCAAAAGGTGTATCGCCCTCCCTCGCGGAAGATCCATCTTCCC
ATGAAGCCGCCTTAGCATTTCTGTGTGTGCTGCTCTCCGCAATGACGATT
ATCTTTATCGGAACCGTGCTGGCAATACCCCTGTCTTCGACGCATGCAGC
TGTCGGTGCAGTAGCGGGCGCTGCAATGCTACTGCATGGTCCAGGATCCT
TGCACTGGCAAAAGCTATATCAAATTGCCGCTGCTTGGATAATCTCCCCC
TTGTTAGGTTGTGTGTTAGGGTTCTTTCTACTCCACCTTACCAGTTTAGC
GCTCCGAGGAAAGCGTTATAACTACATTGTAGCGCCAAGTTTAGCAGGGC
TCACGGCCGCAGCAGTAGCAGGTGTGTTAACAGACTCGCTCGTTCAAATA
TTCGGTTACGAGCATCCATCCACATGTAGCTTCCTCACTGGTTTGACTAT
GGCTTTCGCGCTTGGTTTCGTTGGTGGATGGTTGGTCGTGAACGGTGAAT
ACGAGAAATTGGCTATGGATACACTTCCGGAACACTCCGCCGACGAAGCT
CCAGCAAAATCGGGTGAGAAATCTGCCGACGACTGTTCCGACCGTTCCAA
ACAAACCCCAGAAACCCCTGAAGAGAAGGTTACGAATTACGGAATGGTGG
GACTTCTGCGGCCAAAAAAGATTGCTCTGACGGAGAACTCTTGGTATTTT
GGCGGGCTACTTGTGACAACGGTACCAGCATTGTCATTCGCACACGGGAG
CAACGACGTGTCCAATGGAGTCGGTCCGTTCATAATGATCCTTCGCTTTT
ACCTTCTCAGAAGTAGCGATGGCAAAGTCGACACAATAGCACACACCCTT
TTGTTGGCCGTATTGTGTACGGGTGGTGTAGCAATTGCACTGGGATTGGC
CATTTTCGGATCAAGAGTGATTGCCACGATTGGGGGCAGCGGAGAAAAGT
CGCTCAGCTCTAAGCCATGGACTTTTGCAAGAGCTTTTCCAGCACAGTTC
GCGGCGGCTTGTTCAGTTTTGGTGGCTTCATCGTTTGGGCTTCCCGTCTC
GACTTCGCACGCGGTTGTGGGTGCGGTGGTTGGCGTGCAGTTGGCTAGTG
CGTCTCATGTGAACTGGAAAACATTGACAAGCATTCTTGTCGGGGCCGGT
TTGACACCGATTCTCGCGGCGATTACCTGCATCATTCTCCTGTCTATTCT
TCTTGTGGTGCTATAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:339868..341283-

>Ggra1351.t1 ID=Ggra1351.t1|Name=Ggra1351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000092_pilon:339868..341283- (Gracilaria gracilis GNS1m male)
ATGATTGCTGATCCGTTCATACTTCTTTCCATTGGAGCAATTGGCGCTTT
TGGAATGCTCTTCGTCCTTGGCGCTAACGATGTAGCAAATTCTGTCGGAG
TCCCCATCGGATGTGGGGCTCTCACCACACGGATGGCCATAATTCTGGCT
GCCATTTGTAATATTCTCGGCGCATCGCTCGCCGGTTCCCGAGTTGCGCA
CACGCTGTCAAAAGGTGTATCGCCCTCCCTCGCGGAAGATCCATCTTCCC
ATGAAGCCGCCTTAGCATTTCTGTGTGTGCTGCTCTCCGCAATGACGATT
ATCTTTATCGGAACCGTGCTGGCAATACCCCTGTCTTCGACGCATGCAGC
TGTCGGTGCAGTAGCGGGCGCTGCAATGCTACTGCATGGTCCAGGATCCT
TGCACTGGCAAAAGCTATATCAAATTGCCGCTGCTTGGATAATCTCCCCC
TTGTTAGGTTGTGTGTTAGGGTTCTTTCTACTCCACCTTACCAGTTTAGC
GCTCCGAGGAAAGCGTTATAACTACATTGTAGCGCCAAGTTTAGCAGGGC
TCACGGCCGCAGCAGTAGCAGGTGTGTTAACAGACTCGCTCGTTCAAATA
TTCGGTTACGAGCATCCATCCACATGTAGCTTCCTCACTGGTTTGACTAT
GGCTTTCGCGCTTGGTTTCGTTGGTGGATGGTTGGTCGTGAACGGTGAAT
ACGAGAAATTGGCTATGGATACACTTCCGGAACACTCCGCCGACGAAGCT
CCAGCAAAATCGGGTGAGAAATCTGCCGACGACTGTTCCGACCGTTCCAA
ACAAACCCCAGAAACCCCTGAAGAGAAGGTTACGAATTACGGAATGGTGG
GACTTCTGCGGCCAAAAAAGATTGCTCTGACGGAGAACTCTTGGTATTTT
GGCGGGCTACTTGTGACAACGGTACCAGCATTGTCATTCGCACACGGGAG
CAACGACGTGTCCAATGGAGTCGGTCCGTTCATAATGATCCTTCGCTTTT
ACCTTCTCAGAAGTAGCGATGGCAAAGTCGACACAATAGCACACACCCTT
TTGTTGGCCGTATTGTGTACGGGTGGTGTAGCAATTGCACTGGGATTGGC
CATTTTCGGATCAAGAGTGATTGCCACGATTGGGGGCAGCGGAGAAAAGT
CGCTCAGCTCTAAGCCATGGACTTTTGCAAGAGCTTTTCCAGCACAGTTC
GCGGCGGCTTGTTCAGTTTTGGTGGCTTCATCGTTTGGGCTTCCCGTCTC
GACTTCGCACGCGGTTGTGGGTGCGGTGGTTGGCGTGCAGTTGGCTAGTG
CGTCTCATGTGAACTGGAAAACATTGACAAGCATTCTTGTCGGGGCCGGT
TTGACACCGATTCTCGCGGCGATTACCTGCATCATTCTCCTGTCTATTCT
TCTTGTGGTGCTATAG
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