Ggra1350.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1350.t1
Unique NameGgra1350.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:338557..339562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705274.1
Preferred namePSMB1
PFAMsProteasome
Max annot lvl2759|Eukaryota
KEGG koko:K02732
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019748,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0098542,GO:0098827,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue3.13e-80
EggNOG OGsCOG0638@1|root,KOG0179@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1350Ggra1350Gracilaria gracilis GNS1m malegenetig00000092_pilon 338557..339562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1350.t1Ggra1350.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 338557..339562 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1350.t1.stop1Ggra1350.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 338557..338559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1350.t1.CDS1Ggra1350.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 338557..338852 -
Ggra1350.t1.CDS2Ggra1350.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 339070..339562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1350.t1.exon1Ggra1350.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 338557..338852 -
Ggra1350.t1.exon2Ggra1350.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 339070..339562 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1350.t1.intron1Ggra1350.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 338853..339069 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1350.t1.start1Ggra1350.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 339560..339562 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1350.t1 ID=Ggra1350.t1|Name=Ggra1350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MSILQPNASIRGLPHADPQHAATGFTLGDHHDPSDPLDVAHPAAPLSRHF
HPYENNGGTVVSVSGADYTIVASDTRLGSGYSVPTRYVSRVLKLTDKAVL
ASSGMHTDIVILHKMLKIRLTQYKHRHRKDMTLEAISQLLSTMLYYRRFQ
PYYTFNVLGGIDENGHGWSYGYDAIGSHEKVRAVCSGTGQYLLQPVLDNQ
VEFRQMTPDPSRKELALEPCVELVKDAFTSAGERDIYTGDTVEICRITQK
GVKLEKFELRAD*
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spliced messenger RNA

>Ggra1350.t1 ID=Ggra1350.t1|Name=Ggra1350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000092_pilon:338557..339562- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCTTGCAGCCGAACGCGTCGATCCGTGGTCTGCCTCACGCCGA
TCCCCAACACGCCGCCACTGGTTTCACGCTCGGCGACCACCATGATCCTT
CCGATCCGCTAGACGTCGCTCATCCCGCCGCACCTCTCTCGCGTCACTTC
CATCCTTATGAGAACAACGGCGGTACGGTGGTGTCCGTGTCCGGAGCCGA
TTACACCATCGTCGCGTCCGATACTCGTCTCGGCTCTGGATACTCCGTCC
CCACTCGATATGTCAGTAGAGTGCTCAAACTCACTGATAAGGCAGTCCTG
GCCAGCAGTGGCATGCATACGGATATTGTGATTCTTCACAAGATGTTGAA
GATTAGACTTACTCAGTACAAGCATCGCCATAGGAAGGACATGACTCTTG
AAGCCATTTCACAACTCTTGTCTACCATGTTGTACTACAGACGCTTTCAA
CCATACTATACTTTCAACGTGCTTGGCGGTATAGACGAGAACGGACACGG
ATGGTCGTACGGATACGATGCCATCGGATCTCATGAGAAGGTACGAGCAG
TGTGCAGTGGTACCGGTCAATATCTATTGCAACCCGTCCTTGACAATCAG
GTTGAGTTTCGTCAAATGACCCCCGATCCCAGCCGAAAGGAGCTCGCACT
AGAACCGTGCGTAGAGCTTGTTAAGGATGCGTTCACGTCTGCGGGTGAGC
GAGACATTTATACAGGTGATACTGTTGAAATTTGTCGCATCACACAAAAA
GGTGTTAAACTAGAAAAGTTCGAGCTCAGAGCGGACTAA
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protein sequence of Ggra1350.t1

>Ggra1350.t1 ID=Ggra1350.t1|Name=Ggra1350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MSILQPNASIRGLPHADPQHAATGFTLGDHHDPSDPLDVAHPAAPLSRHF
HPYENNGGTVVSVSGADYTIVASDTRLGSGYSVPTRYVSRVLKLTDKAVL
ASSGMHTDIVILHKMLKIRLTQYKHRHRKDMTLEAISQLLSTMLYYRRFQ
PYYTFNVLGGIDENGHGWSYGYDAIGSHEKVRAVCSGTGQYLLQPVLDNQ
VEFRQMTPDPSRKELALEPCVELVKDAFTSAGERDIYTGDTVEICRITQK
GVKLEKFELRAD*
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mRNA from alignment at tig00000092_pilon:338557..339562-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1350.t1 ID=Ggra1350.t1|Name=Ggra1350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1006bp|location=Sequence derived from alignment at tig00000092_pilon:338557..339562- (Gracilaria gracilis GNS1m male)
ATGTCCATCTTGCAGCCGAACGCGTCGATCCGTGGTCTGCCTCACGCCGA
TCCCCAACACGCCGCCACTGGTTTCACGCTCGGCGACCACCATGATCCTT
CCGATCCGCTAGACGTCGCTCATCCCGCCGCACCTCTCTCGCGTCACTTC
CATCCTTATGAGAACAACGGCGGTACGGTGGTGTCCGTGTCCGGAGCCGA
TTACACCATCGTCGCGTCCGATACTCGTCTCGGCTCTGGATACTCCGTCC
CCACTCGATATGTCAGTAGAGTGCTCAAACTCACTGATAAGGCAGTCCTG
GCCAGCAGTGGCATGCATACGGATATTGTGATTCTTCACAAGATGTTGAA
GATTAGACTTACTCAGTACAAGCATCGCCATAGGAAGGACATGACTCTTG
AAGCCATTTCACAACTCTTGTCTACCATGTTGTACTACAGACGCTTTCAA
CCATACTATACTTTCAACGTGCTTGGCGGTATAGACGAGAACGGTACGCT
GCTTATCTCTCTTTGTTTCATCCTTTCCGCACACTGCGCTTTCTGTGACG
ACTTGTGTTGGCTCCTACTGATGCATCACGATGCACTGATTGAGTTTATC
ACAGTTTCTATTTCACCTCTGACGTCTGAGAAAACGAAAGTGTGGCGAGC
ACGCCAACCTTGACAGGAAAACTGACTGTATCCTTATGTTTGTTTGTGCT
GCATATATAGGACACGGATGGTCGTACGGATACGATGCCATCGGATCTCA
TGAGAAGGTACGAGCAGTGTGCAGTGGTACCGGTCAATATCTATTGCAAC
CCGTCCTTGACAATCAGGTTGAGTTTCGTCAAATGACCCCCGATCCCAGC
CGAAAGGAGCTCGCACTAGAACCGTGCGTAGAGCTTGTTAAGGATGCGTT
CACGTCTGCGGGTGAGCGAGACATTTATACAGGTGATACTGTTGAAATTT
GTCGCATCACACAAAAAGGTGTTAAACTAGAAAAGTTCGAGCTCAGAGCG
GACTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:338557..339562-

>Ggra1350.t1 ID=Ggra1350.t1|Name=Ggra1350.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000092_pilon:338557..339562- (Gracilaria gracilis GNS1m male)
ATGTCCATCTTGCAGCCGAACGCGTCGATCCGTGGTCTGCCTCACGCCGA
TCCCCAACACGCCGCCACTGGTTTCACGCTCGGCGACCACCATGATCCTT
CCGATCCGCTAGACGTCGCTCATCCCGCCGCACCTCTCTCGCGTCACTTC
CATCCTTATGAGAACAACGGCGGTACGGTGGTGTCCGTGTCCGGAGCCGA
TTACACCATCGTCGCGTCCGATACTCGTCTCGGCTCTGGATACTCCGTCC
CCACTCGATATGTCAGTAGAGTGCTCAAACTCACTGATAAGGCAGTCCTG
GCCAGCAGTGGCATGCATACGGATATTGTGATTCTTCACAAGATGTTGAA
GATTAGACTTACTCAGTACAAGCATCGCCATAGGAAGGACATGACTCTTG
AAGCCATTTCACAACTCTTGTCTACCATGTTGTACTACAGACGCTTTCAA
CCATACTATACTTTCAACGTGCTTGGCGGTATAGACGAGAACGGACACGG
ATGGTCGTACGGATACGATGCCATCGGATCTCATGAGAAGGTACGAGCAG
TGTGCAGTGGTACCGGTCAATATCTATTGCAACCCGTCCTTGACAATCAG
GTTGAGTTTCGTCAAATGACCCCCGATCCCAGCCGAAAGGAGCTCGCACT
AGAACCGTGCGTAGAGCTTGTTAAGGATGCGTTCACGTCTGCGGGTGAGC
GAGACATTTATACAGGTGATACTGTTGAAATTTGTCGCATCACACAAAAA
GGTGTTAAACTAGAAAAGTTCGAGCTCAGAGCGGACTAA
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