Ggra1349.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1349.t1
Unique Name	Ggra1349.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:273374..274249 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1054860.KB913030_gene4883
PFAMs	DUF1963
Max annot lvl	201174\|Actinobacteria
Evalue	2.52e-40
EggNOG OGs	COG3878@1\|root,COG3878@2\|Bacteria,2GNAB@201174\|Actinobacteria
Description	Protein conserved in bacteria
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1349	Ggra1349	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 273374..274249 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1349.t1.start1	Ggra1349.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 273374..273376 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1349.t1.CDS1	Ggra1349.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 273374..274249 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1349.t1.exon1	Ggra1349.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 273374..274249 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1349.t1.stop1	Ggra1349.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 274247..274249 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1349.t1	Ggra1349.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 273374..274249 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:273374..274249+
coding sequence from alignment at tig00000092_pilon:273374..274249+

mRNA sequence

>Ggra1349.t1 ID=Ggra1349.t1|Name=Ggra1349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MPQTYMPSFDISSRFPTLSKKTTVILHPRRTSHSLPLRSSKLGGHIAWPA
EEPWPRCPVDETAMVPILQLTKQDVPELGFTSQFNLFQLLWCPHQFHEQS
GYAPLCKCVWRCILEEDDDNGFLKATQVPPSRGDGTAIPKPCKLHAERVQ
EYPHFEEMRYVDEDAAWNVEEWIRQNASEEDIASGMCASDNNSYQSSWSV
SPSTKVGGHIYWKDEVYYPSCDNCGNQMEHLLSVSSSDEYNSGPSPRWYP
VDESKEDATNGPDLCIQNYGMYYVFACRCCEDMSFKGYAQC*

spliced messenger RNA

>Ggra1349.t1 ID=Ggra1349.t1|Name=Ggra1349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000092_pilon:273374..274249+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAAACGTATATGCCAAGCTTCGATATCTCTTCGCGCTTCCCCAC
TCTGTCCAAGAAGACCACCGTCATCTTGCATCCGCGTCGCACGTCCCACT
CGCTACCTCTGCGCTCGTCCAAGCTCGGCGGACACATTGCCTGGCCTGCT
GAGGAACCGTGGCCGAGATGCCCCGTCGACGAGACTGCCATGGTACCCAT
ACTACAGCTTACCAAACAGGATGTACCTGAGCTCGGGTTTACATCGCAGT
TCAATTTGTTTCAGTTATTGTGGTGTCCGCATCAGTTTCATGAACAATCT
GGATATGCGCCTCTTTGTAAATGCGTGTGGAGATGTATACTTGAGGAAGA
CGATGATAACGGTTTCTTGAAGGCCACACAAGTACCACCGTCACGGGGAG
ACGGAACAGCAATCCCAAAGCCTTGTAAATTGCACGCGGAGAGAGTACAA
GAATACCCGCATTTTGAAGAGATGCGCTACGTGGATGAAGACGCCGCCTG
GAATGTAGAAGAGTGGATTAGACAGAATGCGTCGGAGGAGGACATTGCAT
CAGGCATGTGTGCATCGGACAATAACTCATATCAGTCTAGTTGGAGCGTA
TCCCCAAGTACTAAGGTTGGTGGTCACATATATTGGAAGGACGAAGTGTA
CTACCCATCATGTGATAACTGCGGTAATCAAATGGAGCACTTGTTATCAG
TGAGTAGCTCGGATGAGTACAATAGCGGCCCGTCTCCAAGATGGTATCCC
GTGGATGAATCCAAGGAAGATGCCACAAACGGACCAGATCTGTGTATTCA
GAATTATGGCATGTACTACGTTTTCGCGTGTCGTTGCTGTGAAGACATGT
CTTTCAAGGGCTACGCGCAGTGTTGA

protein sequence of Ggra1349.t1

>Ggra1349.t1 ID=Ggra1349.t1|Name=Ggra1349.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MPQTYMPSFDISSRFPTLSKKTTVILHPRRTSHSLPLRSSKLGGHIAWPA
EEPWPRCPVDETAMVPILQLTKQDVPELGFTSQFNLFQLLWCPHQFHEQS
GYAPLCKCVWRCILEEDDDNGFLKATQVPPSRGDGTAIPKPCKLHAERVQ
EYPHFEEMRYVDEDAAWNVEEWIRQNASEEDIASGMCASDNNSYQSSWSV
SPSTKVGGHIYWKDEVYYPSCDNCGNQMEHLLSVSSSDEYNSGPSPRWYP
VDESKEDATNGPDLCIQNYGMYYVFACRCCEDMSFKGYAQC*

mRNA from alignment at tig00000092_pilon:273374..274249+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1349.t1 ID=Ggra1349.t1|Name=Ggra1349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000092_pilon:273374..274249+ (Gracilaria gracilis GNS1m male)
ATGCCACAAACGTATATGCCAAGCTTCGATATCTCTTCGCGCTTCCCCAC
TCTGTCCAAGAAGACCACCGTCATCTTGCATCCGCGTCGCACGTCCCACT
CGCTACCTCTGCGCTCGTCCAAGCTCGGCGGACACATTGCCTGGCCTGCT
GAGGAACCGTGGCCGAGATGCCCCGTCGACGAGACTGCCATGGTACCCAT
ACTACAGCTTACCAAACAGGATGTACCTGAGCTCGGGTTTACATCGCAGT
TCAATTTGTTTCAGTTATTGTGGTGTCCGCATCAGTTTCATGAACAATCT
GGATATGCGCCTCTTTGTAAATGCGTGTGGAGATGTATACTTGAGGAAGA
CGATGATAACGGTTTCTTGAAGGCCACACAAGTACCACCGTCACGGGGAG
ACGGAACAGCAATCCCAAAGCCTTGTAAATTGCACGCGGAGAGAGTACAA
GAATACCCGCATTTTGAAGAGATGCGCTACGTGGATGAAGACGCCGCCTG
GAATGTAGAAGAGTGGATTAGACAGAATGCGTCGGAGGAGGACATTGCAT
CAGGCATGTGTGCATCGGACAATAACTCATATCAGTCTAGTTGGAGCGTA
TCCCCAAGTACTAAGGTTGGTGGTCACATATATTGGAAGGACGAAGTGTA
CTACCCATCATGTGATAACTGCGGTAATCAAATGGAGCACTTGTTATCAG
TGAGTAGCTCGGATGAGTACAATAGCGGCCCGTCTCCAAGATGGTATCCC
GTGGATGAATCCAAGGAAGATGCCACAAACGGACCAGATCTGTGTATTCA
GAATTATGGCATGTACTACGTTTTCGCGTGTCGTTGCTGTGAAGACATGT
CTTTCAAGGGCTACGCGCAGTGTTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:273374..274249+

>Ggra1349.t1 ID=Ggra1349.t1|Name=Ggra1349.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000092_pilon:273374..274249+ (Gracilaria gracilis GNS1m male)
ATGCCACAAACGTATATGCCAAGCTTCGATATCTCTTCGCGCTTCCCCAC
TCTGTCCAAGAAGACCACCGTCATCTTGCATCCGCGTCGCACGTCCCACT
CGCTACCTCTGCGCTCGTCCAAGCTCGGCGGACACATTGCCTGGCCTGCT
GAGGAACCGTGGCCGAGATGCCCCGTCGACGAGACTGCCATGGTACCCAT
ACTACAGCTTACCAAACAGGATGTACCTGAGCTCGGGTTTACATCGCAGT
TCAATTTGTTTCAGTTATTGTGGTGTCCGCATCAGTTTCATGAACAATCT
GGATATGCGCCTCTTTGTAAATGCGTGTGGAGATGTATACTTGAGGAAGA
CGATGATAACGGTTTCTTGAAGGCCACACAAGTACCACCGTCACGGGGAG
ACGGAACAGCAATCCCAAAGCCTTGTAAATTGCACGCGGAGAGAGTACAA
GAATACCCGCATTTTGAAGAGATGCGCTACGTGGATGAAGACGCCGCCTG
GAATGTAGAAGAGTGGATTAGACAGAATGCGTCGGAGGAGGACATTGCAT
CAGGCATGTGTGCATCGGACAATAACTCATATCAGTCTAGTTGGAGCGTA
TCCCCAAGTACTAAGGTTGGTGGTCACATATATTGGAAGGACGAAGTGTA
CTACCCATCATGTGATAACTGCGGTAATCAAATGGAGCACTTGTTATCAG
TGAGTAGCTCGGATGAGTACAATAGCGGCCCGTCTCCAAGATGGTATCCC
GTGGATGAATCCAAGGAAGATGCCACAAACGGACCAGATCTGTGTATTCA
GAATTATGGCATGTACTACGTTTTCGCGTGTCGTTGCTGTGAAGACATGT
CTTTCAAGGGCTACGCGCAGTGTTGA