Ggra1348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1348.t1
Unique NameGgra1348.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:271827..272726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog749414.SBI_07764
PFAMsDUF1963
Max annot lvl201174|Actinobacteria
Evalue3.6e-39
EggNOG OGsCOG3878@1|root,COG3878@2|Bacteria,2GNAB@201174|Actinobacteria
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1348Ggra1348Gracilaria gracilis GNS1m malegenetig00000092_pilon 271827..272726 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1348.t1.stop1Ggra1348.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 271827..271829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1348.t1.CDS1Ggra1348.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 271827..272726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1348.t1.exon1Ggra1348.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 271827..272726 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1348.t1.start1Ggra1348.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 272724..272726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1348.t1Ggra1348.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 271827..272726 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1348.t1 ID=Ggra1348.t1|Name=Ggra1348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MTSTQRTTPPTTYRPVTPVAAHFNLPMKTAVLLHPRRAIVLDKFCSKIGG
QFAWPDQEPWPKCSQHEVPFVPIAQLRRSDVPELPFPARSDLFQLLWCPE
DHVVDEQCGPDITVRWRTCEDILSPRMEAPTPSRVFQNRRQVPKECAIHP
ERIAETPPYNAGIETETIDIWLQQNAQPDFEAMKLPAEYQEDTYISQFSA
APSSKVGGYASYVLEEDSEQPTCERCETDMELLITVSSTDIGDGCSGYRW
APSDVGRREDGMWENMCEKGTGLVVGRCGSAYVFICTNCASMPTELVLM*
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spliced messenger RNA

>Ggra1348.t1 ID=Ggra1348.t1|Name=Ggra1348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000092_pilon:271827..272726- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGCACGCAACGAACAACGCCCCCAACAACCTATCGTCCCGTCAC
ACCAGTAGCCGCTCATTTTAACCTACCGATGAAAACAGCCGTTCTGTTAC
ATCCGCGTCGCGCAATCGTTCTGGACAAATTCTGTTCGAAAATAGGCGGC
CAGTTTGCATGGCCGGATCAAGAACCGTGGCCAAAGTGTAGCCAACATGA
AGTGCCATTCGTGCCGATTGCACAACTTCGTCGCAGTGATGTTCCAGAAT
TGCCATTTCCTGCGAGAAGTGATTTGTTTCAGCTTTTATGGTGTCCTGAA
GATCACGTAGTGGACGAACAATGTGGACCTGATATCACCGTTCGTTGGCG
CACATGTGAGGATATACTGTCACCTCGCATGGAGGCACCGACACCATCGC
GTGTATTTCAAAACAGGAGACAGGTGCCGAAAGAATGTGCAATACACCCA
GAACGAATAGCAGAGACACCGCCATATAATGCCGGGATAGAGACAGAAAC
AATTGATATATGGTTGCAACAAAACGCACAACCAGATTTCGAGGCAATGA
AACTGCCCGCTGAATATCAGGAAGACACATACATTTCTCAGTTCTCAGCA
GCACCGAGCTCGAAGGTAGGGGGTTATGCTAGTTACGTATTGGAAGAAGA
TTCAGAACAACCTACATGTGAGCGTTGTGAAACGGACATGGAATTGCTGA
TTACTGTTTCAAGCACGGACATTGGAGATGGATGTAGTGGGTACCGATGG
GCGCCTAGTGATGTAGGCAGACGGGAGGATGGAATGTGGGAGAATATGTG
CGAAAAGGGCACGGGATTGGTTGTCGGTCGTTGTGGGAGTGCTTATGTGT
TCATTTGTACGAATTGCGCGTCTATGCCAACAGAGCTGGTGTTGATGTGA
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protein sequence of Ggra1348.t1

>Ggra1348.t1 ID=Ggra1348.t1|Name=Ggra1348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MTSTQRTTPPTTYRPVTPVAAHFNLPMKTAVLLHPRRAIVLDKFCSKIGG
QFAWPDQEPWPKCSQHEVPFVPIAQLRRSDVPELPFPARSDLFQLLWCPE
DHVVDEQCGPDITVRWRTCEDILSPRMEAPTPSRVFQNRRQVPKECAIHP
ERIAETPPYNAGIETETIDIWLQQNAQPDFEAMKLPAEYQEDTYISQFSA
APSSKVGGYASYVLEEDSEQPTCERCETDMELLITVSSTDIGDGCSGYRW
APSDVGRREDGMWENMCEKGTGLVVGRCGSAYVFICTNCASMPTELVLM*
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mRNA from alignment at tig00000092_pilon:271827..272726-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1348.t1 ID=Ggra1348.t1|Name=Ggra1348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000092_pilon:271827..272726- (Gracilaria gracilis GNS1m male)
ATGACAAGCACGCAACGAACAACGCCCCCAACAACCTATCGTCCCGTCAC
ACCAGTAGCCGCTCATTTTAACCTACCGATGAAAACAGCCGTTCTGTTAC
ATCCGCGTCGCGCAATCGTTCTGGACAAATTCTGTTCGAAAATAGGCGGC
CAGTTTGCATGGCCGGATCAAGAACCGTGGCCAAAGTGTAGCCAACATGA
AGTGCCATTCGTGCCGATTGCACAACTTCGTCGCAGTGATGTTCCAGAAT
TGCCATTTCCTGCGAGAAGTGATTTGTTTCAGCTTTTATGGTGTCCTGAA
GATCACGTAGTGGACGAACAATGTGGACCTGATATCACCGTTCGTTGGCG
CACATGTGAGGATATACTGTCACCTCGCATGGAGGCACCGACACCATCGC
GTGTATTTCAAAACAGGAGACAGGTGCCGAAAGAATGTGCAATACACCCA
GAACGAATAGCAGAGACACCGCCATATAATGCCGGGATAGAGACAGAAAC
AATTGATATATGGTTGCAACAAAACGCACAACCAGATTTCGAGGCAATGA
AACTGCCCGCTGAATATCAGGAAGACACATACATTTCTCAGTTCTCAGCA
GCACCGAGCTCGAAGGTAGGGGGTTATGCTAGTTACGTATTGGAAGAAGA
TTCAGAACAACCTACATGTGAGCGTTGTGAAACGGACATGGAATTGCTGA
TTACTGTTTCAAGCACGGACATTGGAGATGGATGTAGTGGGTACCGATGG
GCGCCTAGTGATGTAGGCAGACGGGAGGATGGAATGTGGGAGAATATGTG
CGAAAAGGGCACGGGATTGGTTGTCGGTCGTTGTGGGAGTGCTTATGTGT
TCATTTGTACGAATTGCGCGTCTATGCCAACAGAGCTGGTGTTGATGTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:271827..272726-

>Ggra1348.t1 ID=Ggra1348.t1|Name=Ggra1348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000092_pilon:271827..272726- (Gracilaria gracilis GNS1m male)
ATGACAAGCACGCAACGAACAACGCCCCCAACAACCTATCGTCCCGTCAC
ACCAGTAGCCGCTCATTTTAACCTACCGATGAAAACAGCCGTTCTGTTAC
ATCCGCGTCGCGCAATCGTTCTGGACAAATTCTGTTCGAAAATAGGCGGC
CAGTTTGCATGGCCGGATCAAGAACCGTGGCCAAAGTGTAGCCAACATGA
AGTGCCATTCGTGCCGATTGCACAACTTCGTCGCAGTGATGTTCCAGAAT
TGCCATTTCCTGCGAGAAGTGATTTGTTTCAGCTTTTATGGTGTCCTGAA
GATCACGTAGTGGACGAACAATGTGGACCTGATATCACCGTTCGTTGGCG
CACATGTGAGGATATACTGTCACCTCGCATGGAGGCACCGACACCATCGC
GTGTATTTCAAAACAGGAGACAGGTGCCGAAAGAATGTGCAATACACCCA
GAACGAATAGCAGAGACACCGCCATATAATGCCGGGATAGAGACAGAAAC
AATTGATATATGGTTGCAACAAAACGCACAACCAGATTTCGAGGCAATGA
AACTGCCCGCTGAATATCAGGAAGACACATACATTTCTCAGTTCTCAGCA
GCACCGAGCTCGAAGGTAGGGGGTTATGCTAGTTACGTATTGGAAGAAGA
TTCAGAACAACCTACATGTGAGCGTTGTGAAACGGACATGGAATTGCTGA
TTACTGTTTCAAGCACGGACATTGGAGATGGATGTAGTGGGTACCGATGG
GCGCCTAGTGATGTAGGCAGACGGGAGGATGGAATGTGGGAGAATATGTG
CGAAAAGGGCACGGGATTGGTTGTCGGTCGTTGTGGGAGTGCTTATGTGT
TCATTTGTACGAATTGCGCGTCTATGCCAACAGAGCTGGTGTTGATGTGA
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