Ggra1347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1347.t1
Unique Name	Ggra1347.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:265729..267129 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1347	Ggra1347	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 265729..267129 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1347.t1.start1	Ggra1347.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 265729..265731 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1347.t1.CDS1	Ggra1347.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 265729..267129 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1347.t1.exon1	Ggra1347.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 265729..267129 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1347.t1.stop1	Ggra1347.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 267127..267129 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1347.t1	Ggra1347.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 265729..267129 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:265729..267129+
coding sequence from alignment at tig00000092_pilon:265729..267129+

mRNA sequence

>Ggra1347.t1 ID=Ggra1347.t1|Name=Ggra1347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MGASPPEMRIDVAPDGHVQLAVSLSHTFDPALVAGVVAAVRHGIVHASPA
PPASASAPPPPPPPPPPPPPRQLSVRERARRIDAGATREFASSPALALAR
AQRHARSRGAPPLQPQPPPQPQPPPQPQPQPPPQRRLSARTNSVPARAPQ
PRPACGGECRDARQRPPASLPSSRSLSDLTDDSARPSPRRVAPPPVEDGV
AVVPSSPYVRADTFGDESGDDEHPLDDDHHRHDHLVVVDDDDDGGGGDDD
DDDDDEHDAWHSVEYVATDEYERQVQRARLTGRREQLWEGGARGVPLRPN
AWRLLASFASLRVKRAPFDGAMHPTLASGAPSGGAARARPRGRGRTLFSR
GKEARVGDWMEFSSALDVERMLGEVANVIKSLEYEVWRRAGENKLRCIRR
ISESHHMHVVVVVGCIAVPRKSLSVVRLRRAKGDRNRTELWRFQVLFREL
VHRLRASGVDVRGEQS*

spliced messenger RNA

>Ggra1347.t1 ID=Ggra1347.t1|Name=Ggra1347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000092_pilon:265729..267129+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGTCGCCGCCGGAGATGCGCATCGACGTCGCGCCGGACGGCCA
CGTGCAGCTGGCCGTGTCGCTGTCGCACACCTTCGACCCCGCGCTCGTGG
CCGGCGTCGTCGCCGCCGTGCGCCACGGCATCGTGCACGCCTCCCCCGCC
CCGCCCGCATCCGCATCCGCCCCGCCCCCGCCCCCGCCCCCGCCACCGCC
GCCGCCGCCGCGCCAGCTGTCGGTGCGCGAGCGCGCGCGCCGGATTGACG
CCGGTGCCACGCGCGAGTTTGCGTCGTCGCCCGCGCTCGCGCTCGCGCGC
GCGCAGCGCCACGCGcgcagccgcggcgcgccgccgctgcagccgcagcc
gccgccgcagccgcagccgccgccgcagccgcagccgcagccgccgccgc
agcGCCGCCTTAGCGCGCGCACCAACTCCGTGCCGGCGCGCGCGCCGCAG
CCGCGGCCGGCGTGCGGCGGCGAGTGCCGCGACGCGCGCCAGCGACCGCC
GGCGTCGCTGCCGAGCAGCCGCTCGCTGTCGGACCTGACGGACGACTcgg
cgcgcccgtcgccgcgccgcgtcgcgccgccgccCGTGGAGGACGGCGTG
GCCGTCGTGCCTTCATCGCCGTACGTGCGCGCCGACACGTTTGGCGACGA
GTCGGGCGACGACGAGCACCCCCTTGATGATGACCACCACCGCCACGATC
ACTTGGTCGTCGTcgacgacgacgacgacggcggcggcggcgacgacgac
gacgacgacgacgacgaGCACGACGCGTGGCACTCTGTGGAGTATGTGGC
CACGGACGAGTACGAGCGGCAGGTGCAGCGTGCGCGCCTTACCGGCCGCC
GCGAGCAGCTGTGGGAGGGCGGCGCGCGTGGCGTGCCGCTACGCCCCAAC
GCGTGGCGGCTGTTGGCGTCGTTCGCGTCGCTCAGGGTCAAGCGCGCGCC
GTTTGACGGCGCCATGCACCCTACGCTGGCGAGCGGCGCGCCGAGTGGTG
GCGCCGCGCGCGCGAGGCCAAGGGGCAGGGGCAGGACGTTGTTTTCCAGG
GGCAAGGAGGCGCGCGTGGGCGACTGGATGGAGTTCTCGTCGGCGCTGGA
CGTGGAACGCATGCTGGGCGAGGTGGCGAACGTCATCAAGTCGCTGGAGT
ACGAGGTGTGGAGGAGGGCGGGCGAGAATAAGCTACGCTGTATCAGACGC
ATCTCCGAGTCTCATCACATGCATGTGGTGGTGGTGGTCGGCTGCATCGC
CGTGCCGCGCAAGAGCCTCAGCGTGGTGCGACTCAGACGCGCAAAGGGCG
ACCGCAACCGCACGGAGCTGTGGCGCTTCCAGGTGCTGTTCAGGGAACTC
GTGCACCGACTGCGCGCCAGCGGCGTGGACGTGCGTGGCGAACAGTCGTG
A

protein sequence of Ggra1347.t1

>Ggra1347.t1 ID=Ggra1347.t1|Name=Ggra1347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MGASPPEMRIDVAPDGHVQLAVSLSHTFDPALVAGVVAAVRHGIVHASPA
PPASASAPPPPPPPPPPPPPRQLSVRERARRIDAGATREFASSPALALAR
AQRHARSRGAPPLQPQPPPQPQPPPQPQPQPPPQRRLSARTNSVPARAPQ
PRPACGGECRDARQRPPASLPSSRSLSDLTDDSARPSPRRVAPPPVEDGV
AVVPSSPYVRADTFGDESGDDEHPLDDDHHRHDHLVVVDDDDDGGGGDDD
DDDDDEHDAWHSVEYVATDEYERQVQRARLTGRREQLWEGGARGVPLRPN
AWRLLASFASLRVKRAPFDGAMHPTLASGAPSGGAARARPRGRGRTLFSR
GKEARVGDWMEFSSALDVERMLGEVANVIKSLEYEVWRRAGENKLRCIRR
ISESHHMHVVVVVGCIAVPRKSLSVVRLRRAKGDRNRTELWRFQVLFREL
VHRLRASGVDVRGEQS*

mRNA from alignment at tig00000092_pilon:265729..267129+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1347.t1 ID=Ggra1347.t1|Name=Ggra1347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000092_pilon:265729..267129+ (Gracilaria gracilis GNS1m male)
ATGGGCGCGTCGCCGCCGGAGATGCGCATCGACGTCGCGCCGGACGGCCA
CGTGCAGCTGGCCGTGTCGCTGTCGCACACCTTCGACCCCGCGCTCGTGG
CCGGCGTCGTCGCCGCCGTGCGCCACGGCATCGTGCACGCCTCCCCCGCC
CCGCCCGCATCCGCATCCGCCCCGCCCCCGCCCCCGCCCCCGCCACCGCC
GCCGCCGCCGCGCCAGCTGTCGGTGCGCGAGCGCGCGCGCCGGATTGACG
CCGGTGCCACGCGCGAGTTTGCGTCGTCGCCCGCGCTCGCGCTCGCGCGC
GCGCAGCGCCACGCGcgcagccgcggcgcgccgccgctgcagccgcagcc
gccgccgcagccgcagccgccgccgcagccgcagccgcagccgccgccgc
agcGCCGCCTTAGCGCGCGCACCAACTCCGTGCCGGCGCGCGCGCCGCAG
CCGCGGCCGGCGTGCGGCGGCGAGTGCCGCGACGCGCGCCAGCGACCGCC
GGCGTCGCTGCCGAGCAGCCGCTCGCTGTCGGACCTGACGGACGACTcgg
cgcgcccgtcgccgcgccgcgtcgcgccgccgccCGTGGAGGACGGCGTG
GCCGTCGTGCCTTCATCGCCGTACGTGCGCGCCGACACGTTTGGCGACGA
GTCGGGCGACGACGAGCACCCCCTTGATGATGACCACCACCGCCACGATC
ACTTGGTCGTCGTcgacgacgacgacgacggcggcggcggcgacgacgac
gacgacgacgacgacgaGCACGACGCGTGGCACTCTGTGGAGTATGTGGC
CACGGACGAGTACGAGCGGCAGGTGCAGCGTGCGCGCCTTACCGGCCGCC
GCGAGCAGCTGTGGGAGGGCGGCGCGCGTGGCGTGCCGCTACGCCCCAAC
GCGTGGCGGCTGTTGGCGTCGTTCGCGTCGCTCAGGGTCAAGCGCGCGCC
GTTTGACGGCGCCATGCACCCTACGCTGGCGAGCGGCGCGCCGAGTGGTG
GCGCCGCGCGCGCGAGGCCAAGGGGCAGGGGCAGGACGTTGTTTTCCAGG
GGCAAGGAGGCGCGCGTGGGCGACTGGATGGAGTTCTCGTCGGCGCTGGA
CGTGGAACGCATGCTGGGCGAGGTGGCGAACGTCATCAAGTCGCTGGAGT
ACGAGGTGTGGAGGAGGGCGGGCGAGAATAAGCTACGCTGTATCAGACGC
ATCTCCGAGTCTCATCACATGCATGTGGTGGTGGTGGTCGGCTGCATCGC
CGTGCCGCGCAAGAGCCTCAGCGTGGTGCGACTCAGACGCGCAAAGGGCG
ACCGCAACCGCACGGAGCTGTGGCGCTTCCAGGTGCTGTTCAGGGAACTC
GTGCACCGACTGCGCGCCAGCGGCGTGGACGTGCGTGGCGAACAGTCGTG
A

Coding sequence (CDS) from alignment at tig00000092_pilon:265729..267129+

>Ggra1347.t1 ID=Ggra1347.t1|Name=Ggra1347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000092_pilon:265729..267129+ (Gracilaria gracilis GNS1m male)
ATGGGCGCGTCGCCGCCGGAGATGCGCATCGACGTCGCGCCGGACGGCCA
CGTGCAGCTGGCCGTGTCGCTGTCGCACACCTTCGACCCCGCGCTCGTGG
CCGGCGTCGTCGCCGCCGTGCGCCACGGCATCGTGCACGCCTCCCCCGCC
CCGCCCGCATCCGCATCCGCCCCGCCCCCGCCCCCGCCCCCGCCACCGCC
GCCGCCGCCGCGCCAGCTGTCGGTGCGCGAGCGCGCGCGCCGGATTGACG
CCGGTGCCACGCGCGAGTTTGCGTCGTCGCCCGCGCTCGCGCTCGCGCGC
GCGCAGCGCCACGCGcgcagccgcggcgcgccgccgctgcagccgcagcc
gccgccgcagccgcagccgccgccgcagccgcagccgcagccgccgccgc
agcGCCGCCTTAGCGCGCGCACCAACTCCGTGCCGGCGCGCGCGCCGCAG
CCGCGGCCGGCGTGCGGCGGCGAGTGCCGCGACGCGCGCCAGCGACCGCC
GGCGTCGCTGCCGAGCAGCCGCTCGCTGTCGGACCTGACGGACGACTcgg
cgcgcccgtcgccgcgccgcgtcgcgccgccgccCGTGGAGGACGGCGTG
GCCGTCGTGCCTTCATCGCCGTACGTGCGCGCCGACACGTTTGGCGACGA
GTCGGGCGACGACGAGCACCCCCTTGATGATGACCACCACCGCCACGATC
ACTTGGTCGTCGTcgacgacgacgacgacggcggcggcggcgacgacgac
gacgacgacgacgacgaGCACGACGCGTGGCACTCTGTGGAGTATGTGGC
CACGGACGAGTACGAGCGGCAGGTGCAGCGTGCGCGCCTTACCGGCCGCC
GCGAGCAGCTGTGGGAGGGCGGCGCGCGTGGCGTGCCGCTACGCCCCAAC
GCGTGGCGGCTGTTGGCGTCGTTCGCGTCGCTCAGGGTCAAGCGCGCGCC
GTTTGACGGCGCCATGCACCCTACGCTGGCGAGCGGCGCGCCGAGTGGTG
GCGCCGCGCGCGCGAGGCCAAGGGGCAGGGGCAGGACGTTGTTTTCCAGG
GGCAAGGAGGCGCGCGTGGGCGACTGGATGGAGTTCTCGTCGGCGCTGGA
CGTGGAACGCATGCTGGGCGAGGTGGCGAACGTCATCAAGTCGCTGGAGT
ACGAGGTGTGGAGGAGGGCGGGCGAGAATAAGCTACGCTGTATCAGACGC
ATCTCCGAGTCTCATCACATGCATGTGGTGGTGGTGGTCGGCTGCATCGC
CGTGCCGCGCAAGAGCCTCAGCGTGGTGCGACTCAGACGCGCAAAGGGCG
ACCGCAACCGCACGGAGCTGTGGCGCTTCCAGGTGCTGTTCAGGGAACTC
GTGCACCGACTGCGCGCCAGCGGCGTGGACGTGCGTGGCGAACAGTCGTG
A