Ggra1346.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1346.t1
Unique NameGgra1346.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:264266..265399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002500092.1
PFAMsAldo_ket_red
Max annot lvl3041|Chlorophyta
Evalue9.32e-140
EggNOG OGsCOG0667@1|root,KOG1575@2759|Eukaryota,37TBG@33090|Viridiplantae,34H25@3041|Chlorophyta
DescriptionAldo/keto reductase family
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1346Ggra1346Gracilaria gracilis GNS1m malegenetig00000092_pilon 264266..265399 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1346.t1.stop1Ggra1346.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 264266..264268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1346.t1.CDS1Ggra1346.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 264266..265399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1346.t1.exon1Ggra1346.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 264266..265399 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1346.t1.start1Ggra1346.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 265397..265399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1346.t1Ggra1346.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 264266..265399 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1346.t1 ID=Ggra1346.t1|Name=Ggra1346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MTVCSQRVALGSSPLRVSPVCLGSMTWALQNSEQQAHQQIDYALARGINF
IDTAEGYPVPASAPGWQPGATEAIIGRYFANFPHKRAHVVLATKVSGYIP
SSKVAAHRSEPPAAAPYPPSRHDEHSILAACDASLRRLNTDYIDLYQLHW
PDRYVPLWCHRTYHPAQERTAIEFRHILTAIKKLLDSGKIRAWGLSNETT
FGVCQFVNMADQMGIPRPATIQNSFCLLDRRFESELAEACSPSNFNIGLL
PWSILAGGALSGKYLNKLDAESKPIDASLDDFRLVKFPGFMSRYIHPHSV
RATEKYAALAKECNMSLATLAQAFCKSRWYIPSSIIGATSIENLKENIDA
FEITLSENVLRRIDLIHNEDKDAAVLA*
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spliced messenger RNA

>Ggra1346.t1 ID=Ggra1346.t1|Name=Ggra1346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000092_pilon:264266..265399- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTGTGCTCGCAGCGCGTAGCGCTGGGCTCCTCGCCGCTGCGCGT
GTCGCCCGTGTGTCTGGGCTCCATGACGTGGGCGCTGCAGAACAGCGAGC
AGCAAGCGCACCAGCAGATCGACTACGCGCTGGCGCGCGGCATCAACTTC
ATCGACACCGCCGAGGGCTACCCCGTGCCGGCCTCCGCCCCGGGCTGGCA
GCCCGGCGCCACCGAGGCCATCATCGGCCGCTACTTTGCAAACTTCCCGC
ACAAGCGCGCCCACGTCGTGCTGGCTACCAAGGTTTCGGGCTACATTCCG
TCCTCCAAGGTCGCCGCTCACCGCTCAGAGCCGCCTGCTGCCGCGCCGTA
CCCGCCGTCTCGCCATGATGAGCACTCCATTCTCGCCGCGTGCGACGCTA
GTTTGAGGCGCCTCAACACCGATTACATTGATCTTTATCAGTTGCATTGG
CCGGATCGCTACGTTCCGTTGTGGTGTCATCGCACCTACCACCCGGCGCA
GGAGAGAACGGCCATCGAATTCCGCCACATCCTCACCGCCATCAAGAAGC
TCTTGGACTCTGGCAAGATTCGTGCCTGGGGCTTGTCCAACGAGACCACC
TTCGGCGTCTGTCAGTTTGTCAACATGGCCGATCAGATGGGCATTCCCCG
CCCGGCAACCATACAAAACTCCTTCTGTTTGCTGGACAGGCGCTTCGAAT
CCGAGCTCGCCGAAGCCTGTTCACCGTCCAATTTCAACATCGGCCTGCTG
CCGTGGTCCATTCTTGCCGGCGGTGCGCTGTCCGGAAAGTACCTCAACAA
GCTGGACGCCGAATCGAAGCCCATCGATGCATCGCTTGATGATTTTAGAT
TGGTCAAGTTCCCCGGCTTCATGTCCAGGTACATTCACCCCCATTCCGTT
CGTGCTACTGAAAAGTACGCAGCGCTGGCAAAGGAATGCAACATGTCGCT
CGCCACATTGGCGCAGGCTTTTTGCAAGAGCAGGTGGTATATTCCGTCTT
CCATTATTGGTGCTACCTCCATAGAGAACCTCAAGGAAAACATTGATGCC
TTCGAGATTACTCTCAGCGAAAATGTGCTACGTCGTATAGATCTCATTCA
CAACGAGGACAAGGATGCTGCCGTGTTGGCCTGA
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protein sequence of Ggra1346.t1

>Ggra1346.t1 ID=Ggra1346.t1|Name=Ggra1346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MTVCSQRVALGSSPLRVSPVCLGSMTWALQNSEQQAHQQIDYALARGINF
IDTAEGYPVPASAPGWQPGATEAIIGRYFANFPHKRAHVVLATKVSGYIP
SSKVAAHRSEPPAAAPYPPSRHDEHSILAACDASLRRLNTDYIDLYQLHW
PDRYVPLWCHRTYHPAQERTAIEFRHILTAIKKLLDSGKIRAWGLSNETT
FGVCQFVNMADQMGIPRPATIQNSFCLLDRRFESELAEACSPSNFNIGLL
PWSILAGGALSGKYLNKLDAESKPIDASLDDFRLVKFPGFMSRYIHPHSV
RATEKYAALAKECNMSLATLAQAFCKSRWYIPSSIIGATSIENLKENIDA
FEITLSENVLRRIDLIHNEDKDAAVLA*
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mRNA from alignment at tig00000092_pilon:264266..265399-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1346.t1 ID=Ggra1346.t1|Name=Ggra1346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000092_pilon:264266..265399- (Gracilaria gracilis GNS1m male)
ATGACGGTGTGCTCGCAGCGCGTAGCGCTGGGCTCCTCGCCGCTGCGCGT
GTCGCCCGTGTGTCTGGGCTCCATGACGTGGGCGCTGCAGAACAGCGAGC
AGCAAGCGCACCAGCAGATCGACTACGCGCTGGCGCGCGGCATCAACTTC
ATCGACACCGCCGAGGGCTACCCCGTGCCGGCCTCCGCCCCGGGCTGGCA
GCCCGGCGCCACCGAGGCCATCATCGGCCGCTACTTTGCAAACTTCCCGC
ACAAGCGCGCCCACGTCGTGCTGGCTACCAAGGTTTCGGGCTACATTCCG
TCCTCCAAGGTCGCCGCTCACCGCTCAGAGCCGCCTGCTGCCGCGCCGTA
CCCGCCGTCTCGCCATGATGAGCACTCCATTCTCGCCGCGTGCGACGCTA
GTTTGAGGCGCCTCAACACCGATTACATTGATCTTTATCAGTTGCATTGG
CCGGATCGCTACGTTCCGTTGTGGTGTCATCGCACCTACCACCCGGCGCA
GGAGAGAACGGCCATCGAATTCCGCCACATCCTCACCGCCATCAAGAAGC
TCTTGGACTCTGGCAAGATTCGTGCCTGGGGCTTGTCCAACGAGACCACC
TTCGGCGTCTGTCAGTTTGTCAACATGGCCGATCAGATGGGCATTCCCCG
CCCGGCAACCATACAAAACTCCTTCTGTTTGCTGGACAGGCGCTTCGAAT
CCGAGCTCGCCGAAGCCTGTTCACCGTCCAATTTCAACATCGGCCTGCTG
CCGTGGTCCATTCTTGCCGGCGGTGCGCTGTCCGGAAAGTACCTCAACAA
GCTGGACGCCGAATCGAAGCCCATCGATGCATCGCTTGATGATTTTAGAT
TGGTCAAGTTCCCCGGCTTCATGTCCAGGTACATTCACCCCCATTCCGTT
CGTGCTACTGAAAAGTACGCAGCGCTGGCAAAGGAATGCAACATGTCGCT
CGCCACATTGGCGCAGGCTTTTTGCAAGAGCAGGTGGTATATTCCGTCTT
CCATTATTGGTGCTACCTCCATAGAGAACCTCAAGGAAAACATTGATGCC
TTCGAGATTACTCTCAGCGAAAATGTGCTACGTCGTATAGATCTCATTCA
CAACGAGGACAAGGATGCTGCCGTGTTGGCCTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:264266..265399-

>Ggra1346.t1 ID=Ggra1346.t1|Name=Ggra1346.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000092_pilon:264266..265399- (Gracilaria gracilis GNS1m male)
ATGACGGTGTGCTCGCAGCGCGTAGCGCTGGGCTCCTCGCCGCTGCGCGT
GTCGCCCGTGTGTCTGGGCTCCATGACGTGGGCGCTGCAGAACAGCGAGC
AGCAAGCGCACCAGCAGATCGACTACGCGCTGGCGCGCGGCATCAACTTC
ATCGACACCGCCGAGGGCTACCCCGTGCCGGCCTCCGCCCCGGGCTGGCA
GCCCGGCGCCACCGAGGCCATCATCGGCCGCTACTTTGCAAACTTCCCGC
ACAAGCGCGCCCACGTCGTGCTGGCTACCAAGGTTTCGGGCTACATTCCG
TCCTCCAAGGTCGCCGCTCACCGCTCAGAGCCGCCTGCTGCCGCGCCGTA
CCCGCCGTCTCGCCATGATGAGCACTCCATTCTCGCCGCGTGCGACGCTA
GTTTGAGGCGCCTCAACACCGATTACATTGATCTTTATCAGTTGCATTGG
CCGGATCGCTACGTTCCGTTGTGGTGTCATCGCACCTACCACCCGGCGCA
GGAGAGAACGGCCATCGAATTCCGCCACATCCTCACCGCCATCAAGAAGC
TCTTGGACTCTGGCAAGATTCGTGCCTGGGGCTTGTCCAACGAGACCACC
TTCGGCGTCTGTCAGTTTGTCAACATGGCCGATCAGATGGGCATTCCCCG
CCCGGCAACCATACAAAACTCCTTCTGTTTGCTGGACAGGCGCTTCGAAT
CCGAGCTCGCCGAAGCCTGTTCACCGTCCAATTTCAACATCGGCCTGCTG
CCGTGGTCCATTCTTGCCGGCGGTGCGCTGTCCGGAAAGTACCTCAACAA
GCTGGACGCCGAATCGAAGCCCATCGATGCATCGCTTGATGATTTTAGAT
TGGTCAAGTTCCCCGGCTTCATGTCCAGGTACATTCACCCCCATTCCGTT
CGTGCTACTGAAAAGTACGCAGCGCTGGCAAAGGAATGCAACATGTCGCT
CGCCACATTGGCGCAGGCTTTTTGCAAGAGCAGGTGGTATATTCCGTCTT
CCATTATTGGTGCTACCTCCATAGAGAACCTCAAGGAAAACATTGATGCC
TTCGAGATTACTCTCAGCGAAAATGTGCTACGTCGTATAGATCTCATTCA
CAACGAGGACAAGGATGCTGCCGTGTTGGCCTGA
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