Ggra1343.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1343.t1
Unique Name	Ggra1343.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:254375..255382 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1343	Ggra1343	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 254375..255382 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1343.t1.start1	Ggra1343.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 254375..254377 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1343.t1.CDS1	Ggra1343.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 254375..255382 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1343.t1.exon1	Ggra1343.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 254375..255382 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1343.t1.stop1	Ggra1343.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 255380..255382 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1343.t1	Ggra1343.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 254375..255382 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:254375..255382+
coding sequence from alignment at tig00000092_pilon:254375..255382+

mRNA sequence

>Ggra1343.t1 ID=Ggra1343.t1|Name=Ggra1343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MHVTAPSTLSNKSSHPNQQSKSGSLLLSSRSMCPINAITRRALHLLLLLS
ACTALCAAQEVVQSQADADWAIIETRVRIEKTFDDDPGSNFEFWGNVKVK
FDDYIMARTNVADQRDHLICSRDQIGAGTNWVAAVTNAAFAIGAAVATGG
FSTALVVAQASFGLVTQLVRQTNPNVRDCTGGYIATVRYPVSIGVDTYHY
SFEVHLREDDTFGDDVWEMDTRHDTGYKDNWSPLDECWGRYFDPSTIPPT
AFENVRLCRMTDRICTTEDCDKHTFTHPLLGNPTATRGKLVFESVILAWM
KGPVVDGEVQDFNSNGRTTVTRRSFYGPSYGILDV*

spliced messenger RNA

>Ggra1343.t1 ID=Ggra1343.t1|Name=Ggra1343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000092_pilon:254375..255382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTCACAGCACCGAGCACCTTGTCAAACAAGTCCTCGCATCCAAA
TCAACAGAGCAAATCCGGCAGCCTCCTTCTCAGCAGCCGAAGCATGTGCC
CCATCAACGCCATCACCCGCCGGGCCCTACATCTGCTTCTCTTGCTCTCC
GCCTGCACCGCTCTGTGTGCTGCCCAGGAGGTAGTTCAGAGCCAGGCAGA
CGCAGATTGGGCTATCATTGAGACTCGCGTCCGGATCGAGAAGACCTTCG
ACGACGACCCGGGCAGCAACTTTGAATTCTGGGGCAACGTCAAGGTGAAA
TTCGACGACTACATCATGGCCCGCACCAACGTCGCGGATCAGCGAGACCA
TCTGATCTGTTCTCGAGATCAGATCGGCGCCGGCACCAACTGGGTTGCCG
CTGTCACCAATGCCGCTTTTGCGATCGGAGCCGCCGTCGCTACGGGCGGC
TTTTCCACCGCACTCGTCGTCGCGCAGGCAAGTTTCGGGCTTGTCACGCA
GTTGGTCAGACAAACTAATCCCAACGTGCGGGATTGCACCGGTGGGTATA
TTGCCACAGTTAGGTACCCTGTCTCCATTGGTGTGGACACGTATCATTAC
AGTTTCGAGGTGCATTTGCGTGAAGATGATACCTTTGGTGATGACGTCTG
GGAGATGGATACCAGGCATGACACCGGATACAAGGACAACTGGAGTCCAC
TGGATGAGTGCTGGGGGCGCTACTTTGACCCATCCACTATCCCACCGACC
GCGTTTGAGAATGTTCGATTGTGCAGAATGACGGACAGGATTTGTACCAC
CGAAGACTGTGACAAACATACGTTCACCCATCCCTTGCTTGGAAACCCAA
CTGCCACTCGTGGGAAACTAGTGTTTGAGTCTGTCATTCTTGCCTGGATG
AAGGGCCCTGTTGTTGATGGGGAAGTGCAGGACTTCAACTCGAACGGCAG
GACTACTGTCACTCGGAGGAGTTTCTATGGACCGTCGTACGGAATTCTCG
ATGTCTAG

protein sequence of Ggra1343.t1

>Ggra1343.t1 ID=Ggra1343.t1|Name=Ggra1343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MHVTAPSTLSNKSSHPNQQSKSGSLLLSSRSMCPINAITRRALHLLLLLS
ACTALCAAQEVVQSQADADWAIIETRVRIEKTFDDDPGSNFEFWGNVKVK
FDDYIMARTNVADQRDHLICSRDQIGAGTNWVAAVTNAAFAIGAAVATGG
FSTALVVAQASFGLVTQLVRQTNPNVRDCTGGYIATVRYPVSIGVDTYHY
SFEVHLREDDTFGDDVWEMDTRHDTGYKDNWSPLDECWGRYFDPSTIPPT
AFENVRLCRMTDRICTTEDCDKHTFTHPLLGNPTATRGKLVFESVILAWM
KGPVVDGEVQDFNSNGRTTVTRRSFYGPSYGILDV*

mRNA from alignment at tig00000092_pilon:254375..255382+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1343.t1 ID=Ggra1343.t1|Name=Ggra1343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000092_pilon:254375..255382+ (Gracilaria gracilis GNS1m male)
ATGCACGTCACAGCACCGAGCACCTTGTCAAACAAGTCCTCGCATCCAAA
TCAACAGAGCAAATCCGGCAGCCTCCTTCTCAGCAGCCGAAGCATGTGCC
CCATCAACGCCATCACCCGCCGGGCCCTACATCTGCTTCTCTTGCTCTCC
GCCTGCACCGCTCTGTGTGCTGCCCAGGAGGTAGTTCAGAGCCAGGCAGA
CGCAGATTGGGCTATCATTGAGACTCGCGTCCGGATCGAGAAGACCTTCG
ACGACGACCCGGGCAGCAACTTTGAATTCTGGGGCAACGTCAAGGTGAAA
TTCGACGACTACATCATGGCCCGCACCAACGTCGCGGATCAGCGAGACCA
TCTGATCTGTTCTCGAGATCAGATCGGCGCCGGCACCAACTGGGTTGCCG
CTGTCACCAATGCCGCTTTTGCGATCGGAGCCGCCGTCGCTACGGGCGGC
TTTTCCACCGCACTCGTCGTCGCGCAGGCAAGTTTCGGGCTTGTCACGCA
GTTGGTCAGACAAACTAATCCCAACGTGCGGGATTGCACCGGTGGGTATA
TTGCCACAGTTAGGTACCCTGTCTCCATTGGTGTGGACACGTATCATTAC
AGTTTCGAGGTGCATTTGCGTGAAGATGATACCTTTGGTGATGACGTCTG
GGAGATGGATACCAGGCATGACACCGGATACAAGGACAACTGGAGTCCAC
TGGATGAGTGCTGGGGGCGCTACTTTGACCCATCCACTATCCCACCGACC
GCGTTTGAGAATGTTCGATTGTGCAGAATGACGGACAGGATTTGTACCAC
CGAAGACTGTGACAAACATACGTTCACCCATCCCTTGCTTGGAAACCCAA
CTGCCACTCGTGGGAAACTAGTGTTTGAGTCTGTCATTCTTGCCTGGATG
AAGGGCCCTGTTGTTGATGGGGAAGTGCAGGACTTCAACTCGAACGGCAG
GACTACTGTCACTCGGAGGAGTTTCTATGGACCGTCGTACGGAATTCTCG
ATGTCTAG

Coding sequence (CDS) from alignment at tig00000092_pilon:254375..255382+

>Ggra1343.t1 ID=Ggra1343.t1|Name=Ggra1343.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000092_pilon:254375..255382+ (Gracilaria gracilis GNS1m male)
ATGCACGTCACAGCACCGAGCACCTTGTCAAACAAGTCCTCGCATCCAAA
TCAACAGAGCAAATCCGGCAGCCTCCTTCTCAGCAGCCGAAGCATGTGCC
CCATCAACGCCATCACCCGCCGGGCCCTACATCTGCTTCTCTTGCTCTCC
GCCTGCACCGCTCTGTGTGCTGCCCAGGAGGTAGTTCAGAGCCAGGCAGA
CGCAGATTGGGCTATCATTGAGACTCGCGTCCGGATCGAGAAGACCTTCG
ACGACGACCCGGGCAGCAACTTTGAATTCTGGGGCAACGTCAAGGTGAAA
TTCGACGACTACATCATGGCCCGCACCAACGTCGCGGATCAGCGAGACCA
TCTGATCTGTTCTCGAGATCAGATCGGCGCCGGCACCAACTGGGTTGCCG
CTGTCACCAATGCCGCTTTTGCGATCGGAGCCGCCGTCGCTACGGGCGGC
TTTTCCACCGCACTCGTCGTCGCGCAGGCAAGTTTCGGGCTTGTCACGCA
GTTGGTCAGACAAACTAATCCCAACGTGCGGGATTGCACCGGTGGGTATA
TTGCCACAGTTAGGTACCCTGTCTCCATTGGTGTGGACACGTATCATTAC
AGTTTCGAGGTGCATTTGCGTGAAGATGATACCTTTGGTGATGACGTCTG
GGAGATGGATACCAGGCATGACACCGGATACAAGGACAACTGGAGTCCAC
TGGATGAGTGCTGGGGGCGCTACTTTGACCCATCCACTATCCCACCGACC
GCGTTTGAGAATGTTCGATTGTGCAGAATGACGGACAGGATTTGTACCAC
CGAAGACTGTGACAAACATACGTTCACCCATCCCTTGCTTGGAAACCCAA
CTGCCACTCGTGGGAAACTAGTGTTTGAGTCTGTCATTCTTGCCTGGATG
AAGGGCCCTGTTGTTGATGGGGAAGTGCAGGACTTCAACTCGAACGGCAG
GACTACTGTCACTCGGAGGAGTTTCTATGGACCGTCGTACGGAATTCTCG
ATGTCTAG