Ggra1341.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1341.t1
Unique NameGgra1341.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:242070..245979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog253839.SSNG_00050
PFAMsToxin_10,Vps62
Max annot lvl201174|Actinobacteria
Evalue3.54e-42
EggNOG OGs2DEBV@1|root,2ZMA0@2|Bacteria,2IIFJ@201174|Actinobacteria
DescriptionInsecticidal Crystal Toxin, P42
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1341Ggra1341Gracilaria gracilis GNS1m malegenetig00000092_pilon 242070..245979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1341.t1Ggra1341.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 242070..245979 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1341.t1.start1Ggra1341.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 242070..242072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1341.t1.CDS1Ggra1341.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 242070..242843 +
Ggra1341.t1.CDS2Ggra1341.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 245884..245979 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1341.t1.exon1Ggra1341.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 242070..242843 +
Ggra1341.t1.exon2Ggra1341.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 245884..245979 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1341.t1.intron1Ggra1341.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 242844..245883 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1341.t1.stop1Ggra1341.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 245977..245979 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1341.t1 ID=Ggra1341.t1|Name=Ggra1341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MVVSELAFGDLVIAFTTRFSPTWADRGSGASLDGSYFHPQPPPGFHALGS
VGQSGYGNPNGRLVSICVKEAPGNHERPPLKRPVRCDLIWTDRGSGANQD
GACWRPIPPPGYVSLGDLFWGGYNPPSSDVIRCVRQDLTIYGAVDDRSLI
WHDRRSGARSDFSSWRINASQPFRSSADGIFAVTSFIGVGGSYDQPGVGE
PVVKNLRLPLPTVKNVSTTKPTLESRTRPPNRFGSTVDRIVTVPLTAIVD
NDRSLEWIGGGGIASLSHLHPTLPVDSLDSRQSQVLSLA*
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spliced messenger RNA

>Ggra1341.t1 ID=Ggra1341.t1|Name=Ggra1341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000092_pilon:242070..245979+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGAGTGAACTTGCATTTGGGGACCTCGTAATTGCTTTTACGAC
ACGCTTTTCACCCACTTGGGCAGACCGAGGAAGTGGAGCGAGTCTAGACG
GTTCTTACTTTCACCCTCAGCCACCTCCGGGATTCCACGCGCTTGGAAGT
GTTGGACAGTCCGGATATGGAAACCCTAATGGGCGCCTTGTGTCTATCTG
CGTTAAGGAAGCTCCAGGAAATCACGAGAGGCCGCCGCTCAAGCGGCCCG
TACGCTGCGACCTTATCTGGACTGACCGAGGATCAGGTGCCAACCAAGAC
GGTGCGTGCTGGCGTCCCATTCCGCCCCCTGGCTATGTTTCACTGGGGGA
CCTGTTTTGGGGCGGGTACAATCCGCCGAGCAGTGATGTGATTCGGTGTG
TCAGGCAGGATTTGACCATCTACGGCGCTGTCGACGACAGAAGCTTGATA
TGGCATGACAGAAGGTCTGGCGCGCGCAGCGACTTCAGCTCTTGGCGGAT
TAATGCGTCCCAGCCTTTTCGTAGCTCAGCTGATGGCATCTTCGCCGTCA
CCAGTTTCATTGGAGTCGGTGGCAGCTACGATCAACCCGGCGTCGGGGAG
CCAGTGGTGAAGAATCTACGTCTTCCACTGCCAACGGTGAAGAATGTCAG
TACAACAAAGCCCACGCTCGAATCTCGCACCCGCCCGCCGAACAGGTTTG
GTTCGACTGTTGATCGCATTGTGACAGTGCCACTGACAGCTATTGTTGAC
AATGATCGCAGCTTGGAGTGGATCGGTGGTGGCGGCATCGCGTCGCTAAG
TCACTTGCATCCTACTCTTCCAGTCGACAGTCTCGACTCGAGACAGTCGC
AAGTGCTGTCGCTGGCATAG
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protein sequence of Ggra1341.t1

>Ggra1341.t1 ID=Ggra1341.t1|Name=Ggra1341.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MVVSELAFGDLVIAFTTRFSPTWADRGSGASLDGSYFHPQPPPGFHALGS
VGQSGYGNPNGRLVSICVKEAPGNHERPPLKRPVRCDLIWTDRGSGANQD
GACWRPIPPPGYVSLGDLFWGGYNPPSSDVIRCVRQDLTIYGAVDDRSLI
WHDRRSGARSDFSSWRINASQPFRSSADGIFAVTSFIGVGGSYDQPGVGE
PVVKNLRLPLPTVKNVSTTKPTLESRTRPPNRFGSTVDRIVTVPLTAIVD
NDRSLEWIGGGGIASLSHLHPTLPVDSLDSRQSQVLSLA*
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mRNA from alignment at tig00000092_pilon:242070..245979+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1341.t1 ID=Ggra1341.t1|Name=Ggra1341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3910bp|location=Sequence derived from alignment at tig00000092_pilon:242070..245979+ (Gracilaria gracilis GNS1m male)
ATGGTTGTGAGTGAACTTGCATTTGGGGACCTCGTAATTGCTTTTACGAC
ACGCTTTTCACCCACTTGGGCAGACCGAGGAAGTGGAGCGAGTCTAGACG
GTTCTTACTTTCACCCTCAGCCACCTCCGGGATTCCACGCGCTTGGAAGT
GTTGGACAGTCCGGATATGGAAACCCTAATGGGCGCCTTGTGTCTATCTG
CGTTAAGGAAGCTCCAGGAAATCACGAGAGGCCGCCGCTCAAGCGGCCCG
TACGCTGCGACCTTATCTGGACTGACCGAGGATCAGGTGCCAACCAAGAC
GGTGCGTGCTGGCGTCCCATTCCGCCCCCTGGCTATGTTTCACTGGGGGA
CCTGTTTTGGGGCGGGTACAATCCGCCGAGCAGTGATGTGATTCGGTGTG
TCAGGCAGGATTTGACCATCTACGGCGCTGTCGACGACAGAAGCTTGATA
TGGCATGACAGAAGGTCTGGCGCGCGCAGCGACTTCAGCTCTTGGCGGAT
TAATGCGTCCCAGCCTTTTCGTAGCTCAGCTGATGGCATCTTCGCCGTCA
CCAGTTTCATTGGAGTCGGTGGCAGCTACGATCAACCCGGCGTCGGGGAG
CCAGTGGTGAAGAATCTACGTCTTCCACTGCCAACGGTGAAGAATGTCAG
TACAACAAAGCCCACGCTCGAATCTCGCACCCGCCCGCCGAACAGGTTTG
GTTCGACTGTTGATCGCATTGTGACAGTGCCACTGACAGCTATTGTTGAC
AATGATCGCAGCTTGGAGTGGATCGTAAGAAACTCACCTTTCTACACCAT
CGAGAGAGTTACGTATTACAACTTGGTTTTGTTTGATGACAATCACTCAA
GCTTGACGCAATCGAGATCGACGAGTATAGTGACTGGAGTTGAAACAACT
AAAAGCGAGACGTTCAGCAAAAGCACGGGAATCACGGTAGGTGTTGAAAT
TGGAGTTAAAGGTTTCAAGCCTAAAGAGAGCGTATCTTTAACGACGACGT
TCGGCTACGAAAGTTCTTCCGCCGTCTCCAAGTTGCGCCAAGAACATGAT
ACGATTTCTCTCACTATCGCTCtgttgatccaccttgcaggcaaggcgat
ctcgaccagcagttacaattccaaaagctgggttgctaaatgcaaactgc
acgcaagcaacccacgcagatttaagtttgaatcagaagcactgccacct
acgaatcgtaggtggcaggttgagaacgtctacttaataaacaattccag
actctccacaggaggtctgggggcatccgcatctactgcgggacttcctt
ggttcccaacattttgcctttgcctccctcatttttccctaagcgtgtgc
gcgccgtaaatccgaacctagacggaccaacaCGCTCCTAACACTGCAGC
GGCTGTGTGGGTGGAAGGTAATGAATTCCGAGTTCGGAGATCTGATGGAA
CAATTCTCTCAGCAGTGTTGGCATTTGAGCCGTCATCGACTGCGACTGTT
ACTCAGCAGTTTCCAAAGAACTGATCGACTGGGCAACCCCTTTACGTTCG
ATGTTGGATCATTCTGCGTGACGGGTGAGCCGTCACGGCTGGCAGCGATG
CATGGCTACGAACAGAGCAGTCTTTTGACTCAGAAGTTGTGAGGAAAACA
AGCTCGCTTTGGTGGTGGATATTTTCACTCTTTGAGGATGAAACCTGTCA
TCTTCTCTTTATTCTAAGTTGTTTGCTTTTCACTGAACATTGTTTAAGTA
TTATTGATTCAAAGACTTTGATCAGAAACGAAATAAAATGAAAAGAACGA
CAAGCGGAGTCCTTAGGACTGTCCTTACATCGTCGTCATCATCATCGTTC
TCATTGGACAAGTCCAGGACTGGACGAGTCGAGCCTGACTCGACTCGTCG
AGTGCTGCACTCGTCCTTACGTCGTCGTCATCATCATCGTTCTCAACTAC
CGTAGTGTCCACGTGTAGCTCGTGTTCACTATAATCGTGATTACAGTACT
TCATGAGTGGCTTACAGACCACAACCCGGCGCTCACCTTCATGAAGGTGA
GCCTCTTACCTTCAGCAGGTAAGCATTTTACCGAAGCCTTCTTATTCTTC
ATTGCTACATATCCAAGTCGTATGTTGGCTCTACGTGCAGGCGTCAAAGT
CTCGCCTGTTACCTCCGACCATTGAACATCATAAACTGTTTCAGTTTTAT
TTTCACAGGTTGAAATAATTGGTACCCCGATGTTCATGGAACAGCTAACA
ACACTGAAGAGCAAACATTTCTCTTTTCTTTTGGCAGCTGTAGAGATGGA
AGTAAGAATAGCACTGCGgatggcgttacggatggtggtgtggatgatgg
tgcgatggaggtggagatagcgatgcggaggcgtttgggatgTtgtgcgg
ttgtatggttgcaatgcgcaagaggtgtgctgagtgttgaggttcgatgc
ctctgattttactgaagacgccgagatgtggggtcttaagtacaccactg
ctgatgttttctgcttcagaaaactactacagtacactagctaggagata
atgccacccgagcgtgtgtgcagcaatccttggtggagctatgggtgctg
aagtggatgtctatatctactccagtgcccaagtggatgccttcatccac
tacaGATAGTGATACAgtggcactgcggtggcggtgcgaatggcggtgcg
aatggctgtgCTAATGGCCCTGTTTCAAAGAAGGCGAGGTAGTGAGGATG
GCGTGGCGATACGAGGGGGTGGTAGCGGGGATGGCACTACGGGTTTTTGC
GTATATGGAGCGATTGACGTGGTGATGCGGATGCCGTTGAGGCGGCTTTA
GGGGTGGCAGTTCAGTGAGAATGTCTTAGCCGTGTAAATGATGtgcgggt
gcgattgatgtgctgatgcggatgaagaggcggtgcggatTGGCCCACAA
TGGGGCGGCAGTGGACAAGAAAAAGCGCTGGGGAAGGAGATGATAAGGCG
GAGGCGTTTGGGAGGGCGATGGAATTGTGGTGGCGGTGGCGTGTCTTCAG
CGATGGCGTGGTGGAGATGACATTGACGTGGGGATGGAGATGTGATGGCG
GTGCGATGACTTAATGGTAGCGATGGCGTTGGCGGTGGCATTGCGTTGGA
GATGGCGGTGCTGACGGCTGGCCCGACGCGGTTCGGACACGGTGATGCTG
CGGATGGCGGTTCAGAAGGCCATGAAGCGGGAATGTGCATGGCCGTGCTG
TGGGGATGGCGATGATACTGCGGTGAGGTGGCAGTGCGGATGACTGTGCG
ATAGAGATAGGCGGTGTAATGGCGTTGCAGATGGGGGTGCGGGTGGCAAT
GCGGGTGGCGATGCGGGTGGCGGTGCGGATGGCGATGTGGATGGTGGGTG
AGGATGGCGATATTTTCAAGTGTTGGGTTTGATGGTTATAACCGTTATCC
CTGGCGATAGGATTATGCGTCGACACACCCAGAGAATTCTCGATGTTTGG
CATCGTTTGAAATAGCGCACACTTTCAGTTGAACCAATCCATGTGGCTGC
TGACCCTGACAGAGATGATTGGTTATTGCATGCATAGGAGTCCTATCGGC
CTCCTATAATAGGACACGTCATATTGGCCGATTGTATCCAATTCAACGCC
CGTTGTCGACGACTTGTTTTAGTTCACCTTCATATTGTATGCAGGGTAGT
TTGGTTCACTAGAAAGCCTACACAGCCAGCTCCTTTTTCTGGagaacgca
ctatagatcgttgggtttatttagcaaaccctacgtgttgcgacacatta
tcgtacacgctcaGGGTGGTGGCGGCATCGCGTCGCTAAGTCACTTGCAT
CCTACTCTTCCAGTCGACAGTCTCGACTCGAGACAGTCGCAAGTGCTGTC
GCTGGCATAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:242070..245979+

>Ggra1341.t1 ID=Ggra1341.t1|Name=Ggra1341.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000092_pilon:242070..245979+ (Gracilaria gracilis GNS1m male)
ATGGTTGTGAGTGAACTTGCATTTGGGGACCTCGTAATTGCTTTTACGAC
ACGCTTTTCACCCACTTGGGCAGACCGAGGAAGTGGAGCGAGTCTAGACG
GTTCTTACTTTCACCCTCAGCCACCTCCGGGATTCCACGCGCTTGGAAGT
GTTGGACAGTCCGGATATGGAAACCCTAATGGGCGCCTTGTGTCTATCTG
CGTTAAGGAAGCTCCAGGAAATCACGAGAGGCCGCCGCTCAAGCGGCCCG
TACGCTGCGACCTTATCTGGACTGACCGAGGATCAGGTGCCAACCAAGAC
GGTGCGTGCTGGCGTCCCATTCCGCCCCCTGGCTATGTTTCACTGGGGGA
CCTGTTTTGGGGCGGGTACAATCCGCCGAGCAGTGATGTGATTCGGTGTG
TCAGGCAGGATTTGACCATCTACGGCGCTGTCGACGACAGAAGCTTGATA
TGGCATGACAGAAGGTCTGGCGCGCGCAGCGACTTCAGCTCTTGGCGGAT
TAATGCGTCCCAGCCTTTTCGTAGCTCAGCTGATGGCATCTTCGCCGTCA
CCAGTTTCATTGGAGTCGGTGGCAGCTACGATCAACCCGGCGTCGGGGAG
CCAGTGGTGAAGAATCTACGTCTTCCACTGCCAACGGTGAAGAATGTCAG
TACAACAAAGCCCACGCTCGAATCTCGCACCCGCCCGCCGAACAGGTTTG
GTTCGACTGTTGATCGCATTGTGACAGTGCCACTGACAGCTATTGTTGAC
AATGATCGCAGCTTGGAGTGGATCGGTGGTGGCGGCATCGCGTCGCTAAG
TCACTTGCATCCTACTCTTCCAGTCGACAGTCTCGACTCGAGACAGTCGC
AAGTGCTGTCGCTGGCATAG
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