Ggra1340.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1340.t1
Unique NameGgra1340.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:238778..239281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1340Ggra1340Gracilaria gracilis GNS1m malegenetig00000092_pilon 238778..239281 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1340.t1.stop1Ggra1340.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 238778..238780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1340.t1.CDS1Ggra1340.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 238778..239281 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1340.t1.exon1Ggra1340.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 238778..239281 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1340.t1.start1Ggra1340.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 239279..239281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1340.t1Ggra1340.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 238778..239281 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1340.t1 ID=Ggra1340.t1|Name=Ggra1340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=168bp
MVNFKTITTTQESAVEMHNREARTSSTAVLPAPYLPYRESDSSDYEECGS
ICSFGCQFGYENCGWKVMKLEGAKNANMGTGNSGLKLSSTSSEEVSAKEV
VHTEPQTWKTEARGSEWKASSVTAEGDGEKEAPIGGCAGPLRRTVALKKR
LRAFFAEYNPDEKQRNN*
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spliced messenger RNA

>Ggra1340.t1 ID=Ggra1340.t1|Name=Ggra1340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000092_pilon:238778..239281- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACTTCAAGACGATTACTACTACCCAGGAATCTGCGGTGGAAAT
GCACAACCGCGAAGCAAGGACATCCAGCACTGCCGTTCTCCCAGCTCCTT
ATCTACCGTATAGAGAATCGGACTCGTCTGATTACGAAGAGTGTGGCAGC
ATCTGTAGTTTTGGTTGTCAATTTGGTTATGAGAACTGTGGCTGGAAAGT
GATGAAATTGGAAGGGGCCAAGAATGCAAACATGGGAACTGGTAATTCTG
GGCTCAAACTGTCCTCCACCAGTTCAGAAGAAGTCTCGGCCAAGGAGGTG
GTTCACACAGAGCCCCAAACTTGGAAGACAGAAGCAAGAGGTTCAGAGTG
GAAAGCTTCTTCTGTAACTGCCGAAGGAGACGGCGAGAAGGAAGCACCAA
TAGGAGGATGTGCGGGGCCACTACGTCGAACAGTTGCTTTAAAAAAGAGG
CTGAGAGCGTTCTTCGCCGAGTACAACCCTGATGAAAAGCAGCGCAACAA
TTAA
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protein sequence of Ggra1340.t1

>Ggra1340.t1 ID=Ggra1340.t1|Name=Ggra1340.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MVNFKTITTTQESAVEMHNREARTSSTAVLPAPYLPYRESDSSDYEECGS
ICSFGCQFGYENCGWKVMKLEGAKNANMGTGNSGLKLSSTSSEEVSAKEV
VHTEPQTWKTEARGSEWKASSVTAEGDGEKEAPIGGCAGPLRRTVALKKR
LRAFFAEYNPDEKQRNN*
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mRNA from alignment at tig00000092_pilon:238778..239281-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1340.t1 ID=Ggra1340.t1|Name=Ggra1340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000092_pilon:238778..239281- (Gracilaria gracilis GNS1m male)
ATGGTCAACTTCAAGACGATTACTACTACCCAGGAATCTGCGGTGGAAAT
GCACAACCGCGAAGCAAGGACATCCAGCACTGCCGTTCTCCCAGCTCCTT
ATCTACCGTATAGAGAATCGGACTCGTCTGATTACGAAGAGTGTGGCAGC
ATCTGTAGTTTTGGTTGTCAATTTGGTTATGAGAACTGTGGCTGGAAAGT
GATGAAATTGGAAGGGGCCAAGAATGCAAACATGGGAACTGGTAATTCTG
GGCTCAAACTGTCCTCCACCAGTTCAGAAGAAGTCTCGGCCAAGGAGGTG
GTTCACACAGAGCCCCAAACTTGGAAGACAGAAGCAAGAGGTTCAGAGTG
GAAAGCTTCTTCTGTAACTGCCGAAGGAGACGGCGAGAAGGAAGCACCAA
TAGGAGGATGTGCGGGGCCACTACGTCGAACAGTTGCTTTAAAAAAGAGG
CTGAGAGCGTTCTTCGCCGAGTACAACCCTGATGAAAAGCAGCGCAACAA
TTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:238778..239281-

>Ggra1340.t1 ID=Ggra1340.t1|Name=Ggra1340.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00000092_pilon:238778..239281- (Gracilaria gracilis GNS1m male)
ATGGTCAACTTCAAGACGATTACTACTACCCAGGAATCTGCGGTGGAAAT
GCACAACCGCGAAGCAAGGACATCCAGCACTGCCGTTCTCCCAGCTCCTT
ATCTACCGTATAGAGAATCGGACTCGTCTGATTACGAAGAGTGTGGCAGC
ATCTGTAGTTTTGGTTGTCAATTTGGTTATGAGAACTGTGGCTGGAAAGT
GATGAAATTGGAAGGGGCCAAGAATGCAAACATGGGAACTGGTAATTCTG
GGCTCAAACTGTCCTCCACCAGTTCAGAAGAAGTCTCGGCCAAGGAGGTG
GTTCACACAGAGCCCCAAACTTGGAAGACAGAAGCAAGAGGTTCAGAGTG
GAAAGCTTCTTCTGTAACTGCCGAAGGAGACGGCGAGAAGGAAGCACCAA
TAGGAGGATGTGCGGGGCCACTACGTCGAACAGTTGCTTTAAAAAAGAGG
CTGAGAGCGTTCTTCGCCGAGTACAACCCTGATGAAAAGCAGCGCAACAA
TTAA
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