Ggra1339.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1339.t1
Unique Name	Ggra1339.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:234904..236742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1339	Ggra1339	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 234904..236742 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1339.t1	Ggra1339.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 234904..236742 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1339.t1.stop1	Ggra1339.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 234904..234906 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1339.t1.CDS1	Ggra1339.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 234904..235815 -
Ggra1339.t1.CDS2	Ggra1339.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 236047..236742 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1339.t1.exon1	Ggra1339.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 234904..235815 -
Ggra1339.t1.exon2	Ggra1339.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 236047..236742 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1339.t1.intron1	Ggra1339.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000092_pilon 235816..236046 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1339.t1.start1	Ggra1339.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 236740..236742 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:234904..236742-
coding sequence from alignment at tig00000092_pilon:234904..236742-

mRNA sequence

>Ggra1339.t1 ID=Ggra1339.t1|Name=Ggra1339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp
MTESGSPLGQKTFRQWLAVCFRSNTVEEAELESCSYSNYAQRQGGKIRNQ
IKKWVSASKAILGQKQVYLPDRPFSDVQSRPKTFVNMDDYGPNDTAEASP
AEIHNRMARTCGTAVLPAPYKPPRDLDSYSYEECGSMCSSDCPFGGNGAT
STNNLEEGKNDTVERELRQSSLSSEEASGGDVVEAEAHILKTKEIGSEWK
ASSVTAEEEGTEEAPVGGCAVQPLPKTAFKRKLVDIAILTSTPPRRHPQH
HRYLHRHSIGIRSASHPYWHLNCHPAAIRTHIYTALPFPLPSSSSSTFPS
SSTAGSIFFTALTSALSSALAPHHSPICNATALQSHRHPHRTTILTRTPR
PPTPLGNPHCPAIQTNGNCKPSPPPLHHYDHVTTTTMPSPPRPRHYPDHA
TTTPTTPSPPPTSPSPPPTSPSPPRPRHYPEHATTTPDHAITTLDLAITT
PDLSITTPRSPLPRARHHYPEHTIATTTSPLPRARYHYPEHAIATTTSPL
PRARHHHDLAITTTTSPLPPRPRYRRYNAVRNTKS*

spliced messenger RNA

>Ggra1339.t1 ID=Ggra1339.t1|Name=Ggra1339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000092_pilon:234904..236742- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAATCTGGTTCTCCCTTGGGTCAGAAAACTTTCAGACAATGGTT
GGCAGTTTGCTTCAGAAGTAACACGGTGGAAGAGGCTGAACTCGAATCAT
GTTCATACTCTAACTACGCTCAGCGTCAAGGGGGTAAGATCAGGAATCAA
ATCAAGAAGTGGGTTTCGGCTTCAAAGGCCATTTTGGGACAAAAACAAGT
TTACCTTCCCGATAGGCCGTTTAGTGACGTGCAAAGCAGACCTAAGACGT
TTGTAAACATGGATGACTACGGGCCGAATGATACTGCAGAGGCCTCCCCT
GCGGAAATACACAACCGCATGGCGAGGACATGCGGTACTGCCGTTCTTCC
GGCTCCCTACAAACCCCCAAGAGACTTGGACTCGTATTCTTACGAGGAGT
GTGGTAGCATGTGCAGTTCTGATTGTCCATTTGGTGGAAACGGGGCCACA
AGCACAAACAACTTGGAAGAAGGCAAGAATGATACAGTGGAGAGGGAGCT
CAGACAGTCATCCTTGAGTTCAGAAGAAGCTTCTGGTGGGGATGTAGTTG
AGGCGGAGGCCCACATTCTGAAGACAAAGGAAATAGGTTCAGAATGGAAA
GCTTCGTCAGTAACTGCGGAAGAAGAGGGAACAGAAGAAGCACCGGTTGG
AGGATGTGCAGTACAACCACTTCCAAAGACAGCTTTCAAAAGGAAGCTCG
TCGACATCGCCATTCTCACTTCCACCCCACCGCGCCGCCATCCGCAGCAC
CACCGCTATTTGCACCGCCACTCAATTGGCATCAGATCGGCATCGCATCC
GTACTGGCATCTCAACTGTCATCCGGCCGCCATCCGCACCCACATCTACA
CCGCACTGCCGTTTCCACTGCCGTCTTCAAGCTCATCTACATTTCCATCG
TCCAGCACCGCCGGCAGCATCTTTTTTACCGCACTGACATCCGCACTTTC
ATCCGCACTGGCGCCCCACCACTCACCCATCTGCAACGCTACTGCACTGC
AATCCCATCGCCATCCCCACCGCACGACCATTCTCACTCGAACTCCACGG
CCCCCCACACCGCTCGGAAATCCGCACTGCCCAGCCATCCAAACCAACGG
GAACTGCAAGCCGTCACCACCACCACTTCATCACTACGATCACGTCACCA
CCACGACCATGCCATCACCACCACGACCACGCCACTACCCCGACCACGCC
ACCACCACCCCGACCACGCCATCACCACCCCCGACCTCTCCATCACCACC
CCCGACCTCTCCATCACCACCACGACCTCGCCACTACCCCGAGCACGCCA
CCACCACCCCCGACCACGCCATCACCACCCTCGACCTCGCCATCACCACC
CCCGACCTCTCCATCACCACCCCGAGATCGCCACTACCCCGAGCACGCCA
CCACTACCCCGAGCACACCATCGCCACCACGACCTCGCCACTACCGCGAG
CACGCTACCACTACCCCGAGCACGCTATCGCCACCACGACCTCGCCACTA
CCGCGAGCACGCCACCACCACGACCTCGCCATCACCACCACGACCTCGCC
ATTGCCACCCCGACCACGCTATCGCCGCTACAATGCCGTCAGAAACACCA
AGTCTTGA

protein sequence of Ggra1339.t1

>Ggra1339.t1 ID=Ggra1339.t1|Name=Ggra1339.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MTESGSPLGQKTFRQWLAVCFRSNTVEEAELESCSYSNYAQRQGGKIRNQ
IKKWVSASKAILGQKQVYLPDRPFSDVQSRPKTFVNMDDYGPNDTAEASP
AEIHNRMARTCGTAVLPAPYKPPRDLDSYSYEECGSMCSSDCPFGGNGAT
STNNLEEGKNDTVERELRQSSLSSEEASGGDVVEAEAHILKTKEIGSEWK
ASSVTAEEEGTEEAPVGGCAVQPLPKTAFKRKLVDIAILTSTPPRRHPQH
HRYLHRHSIGIRSASHPYWHLNCHPAAIRTHIYTALPFPLPSSSSSTFPS
SSTAGSIFFTALTSALSSALAPHHSPICNATALQSHRHPHRTTILTRTPR
PPTPLGNPHCPAIQTNGNCKPSPPPLHHYDHVTTTTMPSPPRPRHYPDHA
TTTPTTPSPPPTSPSPPPTSPSPPRPRHYPEHATTTPDHAITTLDLAITT
PDLSITTPRSPLPRARHHYPEHTIATTTSPLPRARYHYPEHAIATTTSPL
PRARHHHDLAITTTTSPLPPRPRYRRYNAVRNTKS*

mRNA from alignment at tig00000092_pilon:234904..236742-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1339.t1 ID=Ggra1339.t1|Name=Ggra1339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000092_pilon:234904..236742- (Gracilaria gracilis GNS1m male)
ATGACTGAATCTGGTTCTCCCTTGGGTCAGAAAACTTTCAGACAATGGTT
GGCAGTTTGCTTCAGAAGTAACACGGTGGAAGAGGCTGAACTCGAATCAT
GTTCATACTCTAACTACGCTCAGCGTCAAGGGGGTAAGATCAGGAATCAA
ATCAAGAAGTGGGTTTCGGCTTCAAAGGCCATTTTGGGACAAAAACAAGT
TTACCTTCCCGATAGGCCGTTTAGTGACGTGCAAAGCAGACCTAAGACGT
TTGTAAACATGGATGACTACGGGCCGAATGATACTGCAGAGGCCTCCCCT
GCGGAAATACACAACCGCATGGCGAGGACATGCGGTACTGCCGTTCTTCC
GGCTCCCTACAAACCCCCAAGAGACTTGGACTCGTATTCTTACGAGGAGT
GTGGTAGCATGTGCAGTTCTGATTGTCCATTTGGTGGAAACGGGGCCACA
AGCACAAACAACTTGGAAGAAGGCAAGAATGATACAGTGGAGAGGGAGCT
CAGACAGTCATCCTTGAGTTCAGAAGAAGCTTCTGGTGGGGATGTAGTTG
AGGCGGAGGCCCACATTCTGAAGACAAAGGAAATAGGTTCAGAATGGAAA
GCTTCGTCAGTAACTGCGGAAGAAGAGGGAACAGAAGAAGCACCGGTTGG
AGGATGTGCAGTACAACCACTTCCAAAGACAGCTTTCAAAAGGAAGGTGA
AAGCGTTCTTTTCCAAGTTCGCATGTGGCGGAAACGCGCGGGCCACGTCA
CAGGCGAGTTAGAATTCTGCGATCAAAACCGCAATCGCTTTCCTCTCCCT
CCCATTTTCCCCGCCCACTCTGATACGTGTCCGGTCCTGCATCTGTCCTC
CCTCCCGCTGAACCGTCTCCCGCACTGTTATCACAGAAATCACTGCTCCG
CATCCGCACTACCATCCACATCCCCAGCTCGTCGACATCGCCATTCTCAC
TTCCACCCCACCGCGCCGCCATCCGCAGCACCACCGCTATTTGCACCGCC
ACTCAATTGGCATCAGATCGGCATCGCATCCGTACTGGCATCTCAACTGT
CATCCGGCCGCCATCCGCACCCACATCTACACCGCACTGCCGTTTCCACT
GCCGTCTTCAAGCTCATCTACATTTCCATCGTCCAGCACCGCCGGCAGCA
TCTTTTTTACCGCACTGACATCCGCACTTTCATCCGCACTGGCGCCCCAC
CACTCACCCATCTGCAACGCTACTGCACTGCAATCCCATCGCCATCCCCA
CCGCACGACCATTCTCACTCGAACTCCACGGCCCCCCACACCGCTCGGAA
ATCCGCACTGCCCAGCCATCCAAACCAACGGGAACTGCAAGCCGTCACCA
CCACCACTTCATCACTACGATCACGTCACCACCACGACCATGCCATCACC
ACCACGACCACGCCACTACCCCGACCACGCCACCACCACCCCGACCACGC
CATCACCACCCCCGACCTCTCCATCACCACCCCCGACCTCTCCATCACCA
CCACGACCTCGCCACTACCCCGAGCACGCCACCACCACCCCCGACCACGC
CATCACCACCCTCGACCTCGCCATCACCACCCCCGACCTCTCCATCACCA
CCCCGAGATCGCCACTACCCCGAGCACGCCACCACTACCCCGAGCACACC
ATCGCCACCACGACCTCGCCACTACCGCGAGCACGCTACCACTACCCCGA
GCACGCTATCGCCACCACGACCTCGCCACTACCGCGAGCACGCCACCACC
ACGACCTCGCCATCACCACCACGACCTCGCCATTGCCACCCCGACCACGC
TATCGCCGCTACAATGCCGTCAGAAACACCAAGTCTTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:234904..236742-

>Ggra1339.t1 ID=Ggra1339.t1|Name=Ggra1339.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000092_pilon:234904..236742- (Gracilaria gracilis GNS1m male)
ATGACTGAATCTGGTTCTCCCTTGGGTCAGAAAACTTTCAGACAATGGTT
GGCAGTTTGCTTCAGAAGTAACACGGTGGAAGAGGCTGAACTCGAATCAT
GTTCATACTCTAACTACGCTCAGCGTCAAGGGGGTAAGATCAGGAATCAA
ATCAAGAAGTGGGTTTCGGCTTCAAAGGCCATTTTGGGACAAAAACAAGT
TTACCTTCCCGATAGGCCGTTTAGTGACGTGCAAAGCAGACCTAAGACGT
TTGTAAACATGGATGACTACGGGCCGAATGATACTGCAGAGGCCTCCCCT
GCGGAAATACACAACCGCATGGCGAGGACATGCGGTACTGCCGTTCTTCC
GGCTCCCTACAAACCCCCAAGAGACTTGGACTCGTATTCTTACGAGGAGT
GTGGTAGCATGTGCAGTTCTGATTGTCCATTTGGTGGAAACGGGGCCACA
AGCACAAACAACTTGGAAGAAGGCAAGAATGATACAGTGGAGAGGGAGCT
CAGACAGTCATCCTTGAGTTCAGAAGAAGCTTCTGGTGGGGATGTAGTTG
AGGCGGAGGCCCACATTCTGAAGACAAAGGAAATAGGTTCAGAATGGAAA
GCTTCGTCAGTAACTGCGGAAGAAGAGGGAACAGAAGAAGCACCGGTTGG
AGGATGTGCAGTACAACCACTTCCAAAGACAGCTTTCAAAAGGAAGCTCG
TCGACATCGCCATTCTCACTTCCACCCCACCGCGCCGCCATCCGCAGCAC
CACCGCTATTTGCACCGCCACTCAATTGGCATCAGATCGGCATCGCATCC
GTACTGGCATCTCAACTGTCATCCGGCCGCCATCCGCACCCACATCTACA
CCGCACTGCCGTTTCCACTGCCGTCTTCAAGCTCATCTACATTTCCATCG
TCCAGCACCGCCGGCAGCATCTTTTTTACCGCACTGACATCCGCACTTTC
ATCCGCACTGGCGCCCCACCACTCACCCATCTGCAACGCTACTGCACTGC
AATCCCATCGCCATCCCCACCGCACGACCATTCTCACTCGAACTCCACGG
CCCCCCACACCGCTCGGAAATCCGCACTGCCCAGCCATCCAAACCAACGG
GAACTGCAAGCCGTCACCACCACCACTTCATCACTACGATCACGTCACCA
CCACGACCATGCCATCACCACCACGACCACGCCACTACCCCGACCACGCC
ACCACCACCCCGACCACGCCATCACCACCCCCGACCTCTCCATCACCACC
CCCGACCTCTCCATCACCACCACGACCTCGCCACTACCCCGAGCACGCCA
CCACCACCCCCGACCACGCCATCACCACCCTCGACCTCGCCATCACCACC
CCCGACCTCTCCATCACCACCCCGAGATCGCCACTACCCCGAGCACGCCA
CCACTACCCCGAGCACACCATCGCCACCACGACCTCGCCACTACCGCGAG
CACGCTACCACTACCCCGAGCACGCTATCGCCACCACGACCTCGCCACTA
CCGCGAGCACGCCACCACCACGACCTCGCCATCACCACCACGACCTCGCC
ATTGCCACCCCGACCACGCTATCGCCGCTACAATGCCGTCAGAAACACCA
AGTCTTGA