Ggra1335.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1335.t1
Unique NameGgra1335.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length599
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:220549..222345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue8.1e-78
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1335Ggra1335Gracilaria gracilis GNS1m malegenetig00000092_pilon 220549..222345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1335.t1.stop1Ggra1335.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 220549..220551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1335.t1.CDS1Ggra1335.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 220549..222345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1335.t1.exon1Ggra1335.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 220549..222345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1335.t1.start1Ggra1335.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 222343..222345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1335.t1Ggra1335.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 220549..222345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1335.t1 ID=Ggra1335.t1|Name=Ggra1335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=599bp
LLQRVPPVVATSAQLKCARHALLLKYQRLWLELRSRVVLASADDGQLVSL
FSVHAAVVARKPNAPLLKLTRPHSAHAVWIRFDDERAADAWEKALINAAQ
QRVVAISDFEFISPIGKGASGKVFLVADRKTGHKLALKVLDKNKVFESST
TLRHALDERLALQMVDGHPFFSRLRYAFQTRSYLYLAIDFYHGGDLYQYL
NTHSGRLREPQVRAVSAQVLLALEHLHALGFVYRDLKPENVLLDSHGHVR
LADFGLCKFIPDNTLTNSICGTHTYAAPEMLSVRNYGKSVDLWAFGVFVY
HMLRGRTPYEARELDQVIANMNNRRIRFSSSTSGELVNMVKRLLDWNPDT
RLGCGRAGCAEVREHPFFRGVDWRSVYLRHSAQHALFGRGAHGAQHGAQL
RDGDEGNTLQARADDGADDGADDGAEPPAVGACAAALAANDAGETPGTLV
VTDEYAHMDALDEGQTRAAVLNVEPIALVAGAGGGGGGGGGGGGDGGGGS
AGADDSRRGGGERKSADRHESLRERMKKASAEQDDLRNFDMSEWGKISVD
HDYDDVNYGDHALWPASKARRKIADDQRLIVGYAYCSAGSSFSVPPDL*
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spliced messenger RNA

>Ggra1335.t1 ID=Ggra1335.t1|Name=Ggra1335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000092_pilon:220549..222345- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTGCAGCGCGTGCCGCCCGTGGTGGCCACGTCCGCGCAGCTTAAGTG
CGCGCGCCACGCGCTGCTGCTCAAGTACCAGCGCCTGTGGCTGGAGCTGC
GCTCGCGCGTCGTGCTGGCCTCCGCCGATGACGGCCAGCTCGTGTCGCTC
TTCTCCGTGCATGCCGCCGTCGTGGCGCGAAAGCCCAACGCCCCGCTGCT
CAAGCTCACGCGCCCCCACTCCGCGCACGCCGTCTGGATCCGCTTTGACG
ACGAGCGCGCCGCCGACGCGTGGGAAAAGGCGCTCATCAACGCCGCGCAG
CAGCGCGTCGTCGCCATTTCCGACTTTGAGTTCATCAGCCCCATTGGAAA
GGGCGCCAGCGGTAAGGTGTTCCTGGTCGCCGATCGCAAGACGGGGCACA
AGCTCGCGCTCAAAGTGCTGGACAAGAACAAGGTCTTCGAGTCCAGCACC
ACGCTGCGCCACGCGCTGGACGAGCGTCTGGCGCTGCAGATGGTCGATGG
CCACCCGTTCTTCTCGCGCCTGCGCTACGCCTTCCAGACCCGCTCCTACC
TCTACCTCGCCATCGATTTCTACCACGGCGGCGACCTCTACCAGTACCTT
AACACCCACTCGGGCCGCCTGCGCGAGCCGCAGGTGCGCGCCGTGTCCGC
GCAGGTGCTGCTCGCGTTGGAGCATCTGCACGCGTTGGGCTTTGTTTACC
GCGACCTCAAGCCAGAGAACGTGCTGCTGGACTCGCACGGCCACGTGCGC
CTGGCCGACTTTGGGCTGTGCAAGTTCATCCCGGACAACACGCTCACCAA
CTCCATCTGCGGCACGCACACGTACGCCGCGCCGGAGATGCTGTCCGTGC
GCAACTACGGCAAGTCGGTGGACCTGTGGGCGTTTGGCGTGTTTGTGTAC
CACATGCTGAGGGGGCGCACGCCGTACGAGGCGCGCGAACTGGACCAGGT
CATTGCCAACATGAACAACCGCCGCATCCGCTTCTCGTCGTCCACGTCCG
GCGAGCTGGTCAACATGGTCAAGCGCCTGCTGGACTGGAACCCCGACACG
CGCCTCGGCTGCGGGCGCGCCGGCTGCGCCGAGGTGCGCGAGCACCCGTT
CTTCCGCGGCGTGGACTGGCGCAGCGTTTACTTGAGACACAGCGCGCAGC
ACGCGTTGTTTGGGCGCGGCGCACATGGCGCGCAGCATGGCGCGCAGCTG
CGCGATGGCGATGAGGGCAATACCTTGCAAGCGCGCGCTGACGACGGCGC
TGACGACGGCGCTGACGACGGCGCTGAGCCACCGGCTGTTGGCGCGTGCG
CGGCCGCGCTTGCTGCTAATGACGCCGGCGAGACGCCGGGCACGCTGGTG
GTCACGGACGAGTACGCGCATATGGACGCGCTGGACGAGGGGCAGACACG
CGCCGCCGTGCTTAACGTCGAGCCAATCGCGCTGGTGGCCGGCGCAGGCG
GCGGAGGAGGAGGAGGAGGTGGTGGTGGTGGCGATGGTGGTGGTGGTAGT
GCTGGGGCGGACGACAGCCGGCGCGGTGGGGGGGAGAGGAAGAGCGCGGA
CAGGCACGAGAGCCTGAGGGAGCGGATGAAGAAGGCGTCGGCCGAGCAGG
ACGACCTGCGCAACTTCGACATGAGCGAGTGGGGCAAGATCAGCGTGGAC
CACGACTACGACGACGTCAACTACGGCGACCACGCGCTGTGGCCCGCGTC
CAAGGCGCGCCGGAAGATCGCCGATGACCAGCGCCTCATCGTCGGCTACG
CGTACTGCAGCGCGGGCTCCTCCTTCTCCGTGCCGCCCGACTTGTAG
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protein sequence of Ggra1335.t1

>Ggra1335.t1 ID=Ggra1335.t1|Name=Ggra1335.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=599bp
LLQRVPPVVATSAQLKCARHALLLKYQRLWLELRSRVVLASADDGQLVSL
FSVHAAVVARKPNAPLLKLTRPHSAHAVWIRFDDERAADAWEKALINAAQ
QRVVAISDFEFISPIGKGASGKVFLVADRKTGHKLALKVLDKNKVFESST
TLRHALDERLALQMVDGHPFFSRLRYAFQTRSYLYLAIDFYHGGDLYQYL
NTHSGRLREPQVRAVSAQVLLALEHLHALGFVYRDLKPENVLLDSHGHVR
LADFGLCKFIPDNTLTNSICGTHTYAAPEMLSVRNYGKSVDLWAFGVFVY
HMLRGRTPYEARELDQVIANMNNRRIRFSSSTSGELVNMVKRLLDWNPDT
RLGCGRAGCAEVREHPFFRGVDWRSVYLRHSAQHALFGRGAHGAQHGAQL
RDGDEGNTLQARADDGADDGADDGAEPPAVGACAAALAANDAGETPGTLV
VTDEYAHMDALDEGQTRAAVLNVEPIALVAGAGGGGGGGGGGGGDGGGGS
AGADDSRRGGGERKSADRHESLRERMKKASAEQDDLRNFDMSEWGKISVD
HDYDDVNYGDHALWPASKARRKIADDQRLIVGYAYCSAGSSFSVPPDL*
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mRNA from alignment at tig00000092_pilon:220549..222345-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1335.t1 ID=Ggra1335.t1|Name=Ggra1335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000092_pilon:220549..222345- (Gracilaria gracilis GNS1m male)
TTGCTGCAGCGCGTGCCGCCCGTGGTGGCCACGTCCGCGCAGCTTAAGTG
CGCGCGCCACGCGCTGCTGCTCAAGTACCAGCGCCTGTGGCTGGAGCTGC
GCTCGCGCGTCGTGCTGGCCTCCGCCGATGACGGCCAGCTCGTGTCGCTC
TTCTCCGTGCATGCCGCCGTCGTGGCGCGAAAGCCCAACGCCCCGCTGCT
CAAGCTCACGCGCCCCCACTCCGCGCACGCCGTCTGGATCCGCTTTGACG
ACGAGCGCGCCGCCGACGCGTGGGAAAAGGCGCTCATCAACGCCGCGCAG
CAGCGCGTCGTCGCCATTTCCGACTTTGAGTTCATCAGCCCCATTGGAAA
GGGCGCCAGCGGTAAGGTGTTCCTGGTCGCCGATCGCAAGACGGGGCACA
AGCTCGCGCTCAAAGTGCTGGACAAGAACAAGGTCTTCGAGTCCAGCACC
ACGCTGCGCCACGCGCTGGACGAGCGTCTGGCGCTGCAGATGGTCGATGG
CCACCCGTTCTTCTCGCGCCTGCGCTACGCCTTCCAGACCCGCTCCTACC
TCTACCTCGCCATCGATTTCTACCACGGCGGCGACCTCTACCAGTACCTT
AACACCCACTCGGGCCGCCTGCGCGAGCCGCAGGTGCGCGCCGTGTCCGC
GCAGGTGCTGCTCGCGTTGGAGCATCTGCACGCGTTGGGCTTTGTTTACC
GCGACCTCAAGCCAGAGAACGTGCTGCTGGACTCGCACGGCCACGTGCGC
CTGGCCGACTTTGGGCTGTGCAAGTTCATCCCGGACAACACGCTCACCAA
CTCCATCTGCGGCACGCACACGTACGCCGCGCCGGAGATGCTGTCCGTGC
GCAACTACGGCAAGTCGGTGGACCTGTGGGCGTTTGGCGTGTTTGTGTAC
CACATGCTGAGGGGGCGCACGCCGTACGAGGCGCGCGAACTGGACCAGGT
CATTGCCAACATGAACAACCGCCGCATCCGCTTCTCGTCGTCCACGTCCG
GCGAGCTGGTCAACATGGTCAAGCGCCTGCTGGACTGGAACCCCGACACG
CGCCTCGGCTGCGGGCGCGCCGGCTGCGCCGAGGTGCGCGAGCACCCGTT
CTTCCGCGGCGTGGACTGGCGCAGCGTTTACTTGAGACACAGCGCGCAGC
ACGCGTTGTTTGGGCGCGGCGCACATGGCGCGCAGCATGGCGCGCAGCTG
CGCGATGGCGATGAGGGCAATACCTTGCAAGCGCGCGCTGACGACGGCGC
TGACGACGGCGCTGACGACGGCGCTGAGCCACCGGCTGTTGGCGCGTGCG
CGGCCGCGCTTGCTGCTAATGACGCCGGCGAGACGCCGGGCACGCTGGTG
GTCACGGACGAGTACGCGCATATGGACGCGCTGGACGAGGGGCAGACACG
CGCCGCCGTGCTTAACGTCGAGCCAATCGCGCTGGTGGCCGGCGCAGGCG
GCGGAGGAGGAGGAGGAGGTGGTGGTGGTGGCGATGGTGGTGGTGGTAGT
GCTGGGGCGGACGACAGCCGGCGCGGTGGGGGGGAGAGGAAGAGCGCGGA
CAGGCACGAGAGCCTGAGGGAGCGGATGAAGAAGGCGTCGGCCGAGCAGG
ACGACCTGCGCAACTTCGACATGAGCGAGTGGGGCAAGATCAGCGTGGAC
CACGACTACGACGACGTCAACTACGGCGACCACGCGCTGTGGCCCGCGTC
CAAGGCGCGCCGGAAGATCGCCGATGACCAGCGCCTCATCGTCGGCTACG
CGTACTGCAGCGCGGGCTCCTCCTTCTCCGTGCCGCCCGACTTGTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:220549..222345-

>Ggra1335.t1 ID=Ggra1335.t1|Name=Ggra1335.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1797bp|location=Sequence derived from alignment at tig00000092_pilon:220549..222345- (Gracilaria gracilis GNS1m male)
TTGCTGCAGCGCGTGCCGCCCGTGGTGGCCACGTCCGCGCAGCTTAAGTG
CGCGCGCCACGCGCTGCTGCTCAAGTACCAGCGCCTGTGGCTGGAGCTGC
GCTCGCGCGTCGTGCTGGCCTCCGCCGATGACGGCCAGCTCGTGTCGCTC
TTCTCCGTGCATGCCGCCGTCGTGGCGCGAAAGCCCAACGCCCCGCTGCT
CAAGCTCACGCGCCCCCACTCCGCGCACGCCGTCTGGATCCGCTTTGACG
ACGAGCGCGCCGCCGACGCGTGGGAAAAGGCGCTCATCAACGCCGCGCAG
CAGCGCGTCGTCGCCATTTCCGACTTTGAGTTCATCAGCCCCATTGGAAA
GGGCGCCAGCGGTAAGGTGTTCCTGGTCGCCGATCGCAAGACGGGGCACA
AGCTCGCGCTCAAAGTGCTGGACAAGAACAAGGTCTTCGAGTCCAGCACC
ACGCTGCGCCACGCGCTGGACGAGCGTCTGGCGCTGCAGATGGTCGATGG
CCACCCGTTCTTCTCGCGCCTGCGCTACGCCTTCCAGACCCGCTCCTACC
TCTACCTCGCCATCGATTTCTACCACGGCGGCGACCTCTACCAGTACCTT
AACACCCACTCGGGCCGCCTGCGCGAGCCGCAGGTGCGCGCCGTGTCCGC
GCAGGTGCTGCTCGCGTTGGAGCATCTGCACGCGTTGGGCTTTGTTTACC
GCGACCTCAAGCCAGAGAACGTGCTGCTGGACTCGCACGGCCACGTGCGC
CTGGCCGACTTTGGGCTGTGCAAGTTCATCCCGGACAACACGCTCACCAA
CTCCATCTGCGGCACGCACACGTACGCCGCGCCGGAGATGCTGTCCGTGC
GCAACTACGGCAAGTCGGTGGACCTGTGGGCGTTTGGCGTGTTTGTGTAC
CACATGCTGAGGGGGCGCACGCCGTACGAGGCGCGCGAACTGGACCAGGT
CATTGCCAACATGAACAACCGCCGCATCCGCTTCTCGTCGTCCACGTCCG
GCGAGCTGGTCAACATGGTCAAGCGCCTGCTGGACTGGAACCCCGACACG
CGCCTCGGCTGCGGGCGCGCCGGCTGCGCCGAGGTGCGCGAGCACCCGTT
CTTCCGCGGCGTGGACTGGCGCAGCGTTTACTTGAGACACAGCGCGCAGC
ACGCGTTGTTTGGGCGCGGCGCACATGGCGCGCAGCATGGCGCGCAGCTG
CGCGATGGCGATGAGGGCAATACCTTGCAAGCGCGCGCTGACGACGGCGC
TGACGACGGCGCTGACGACGGCGCTGAGCCACCGGCTGTTGGCGCGTGCG
CGGCCGCGCTTGCTGCTAATGACGCCGGCGAGACGCCGGGCACGCTGGTG
GTCACGGACGAGTACGCGCATATGGACGCGCTGGACGAGGGGCAGACACG
CGCCGCCGTGCTTAACGTCGAGCCAATCGCGCTGGTGGCCGGCGCAGGCG
GCGGAGGAGGAGGAGGAGGTGGTGGTGGTGGCGATGGTGGTGGTGGTAGT
GCTGGGGCGGACGACAGCCGGCGCGGTGGGGGGGAGAGGAAGAGCGCGGA
CAGGCACGAGAGCCTGAGGGAGCGGATGAAGAAGGCGTCGGCCGAGCAGG
ACGACCTGCGCAACTTCGACATGAGCGAGTGGGGCAAGATCAGCGTGGAC
CACGACTACGACGACGTCAACTACGGCGACCACGCGCTGTGGCCCGCGTC
CAAGGCGCGCCGGAAGATCGCCGATGACCAGCGCCTCATCGTCGGCTACG
CGTACTGCAGCGCGGGCTCCTCCTTCTCCGTGCCGCCCGACTTGTAG
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