Ggra1334.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1334.t1
Unique NameGgra1334.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:219175..220059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706580.1
Preferred nameBIM1
PFAMsCH,EB1
Max annot lvl2759|Eukaryota
KEGG koko:K10436
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000079,GO:0000226,GO:0000235,GO:0000278,GO:0000280,GO:0000281,GO:0000741,GO:0000742,GO:0000743,GO:0000746,GO:0000747,GO:0000775,GO:0000776,GO:0000819,GO:0000910,GO:0000922,GO:0001100,GO:0001671,GO:0001932,GO:0001934,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006276,GO:0006355,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007019,GO:0007020,GO:0007026,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007080,GO:0007088,GO:0007093,GO:0007096,GO:0007097,GO:0007127,GO:0007163,GO:0007346,GO:0008017,GO:0008022,GO:0008047,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008608,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022411,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0030234,GO:0030473,GO:0030496,GO:0030541,GO:0030543,GO:0030674,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0031109,GO:0031110,GO:0031111,GO:0031112,GO:0031113,GO:0031114,GO:0031116,GO:0031143,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031401,GO:0031503,GO:0031577,GO:0031578,GO:0031592,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032781,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033566,GO:0033674,GO:0034613,GO:0034622,GO:0034629,GO:0035371,GO:0035372,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0042995,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0043462,GO:0043549,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044732,GO:0044764,GO:0044877,GO:0045737,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045860,GO:0045893,GO:0045930,GO:0045935,GO:0045937,GO:0046785,GO:0046907,GO:0046983,GO:0048284,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0051010,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051233,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051258,GO:0051261,GO:0051276,GO:0051285,GO:0051286,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051494,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055028,GO:0060090,GO:0060255,GO:0060589,GO:0060590,GO:0061171,GO:0061640,GO:0061673,GO:0061982,GO:0065003,GO:0065007,GO:0065009,GO:0070507,GO:0070727,GO:0070840,GO:0070925,GO:0071174,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0071988,GO:0072384,GO:0072686,GO:0072698,GO:0080090,GO:0090307,GO:0097435,GO:0098687,GO:0098772,GO:0098813,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0120025,GO:0140013,GO:0140014,GO:1901879,GO:1901880,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902440,GO:1902680,GO:1902850,GO:1902903,GO:1902904,GO:1902905,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1904825,GO:1905508,GO:1905725,GO:1905818,GO:1905819,GO:1990023,GO:1990735,GO:1990752,GO:2000112,GO:2000816,GO:2001141,GO:2001251
Evalue9.13e-49
EggNOG OGsCOG5217@1|root,KOG3000@2759|Eukaryota
Descriptionmicrotubule binding
COG categoryDZ
BRITEko00000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1334Ggra1334Gracilaria gracilis GNS1m malegenetig00000092_pilon 219175..220059 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1334.t1.stop1Ggra1334.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 219175..219177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1334.t1.CDS1Ggra1334.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 219175..220059 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1334.t1.exon1Ggra1334.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 219175..220059 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1334.t1.start1Ggra1334.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 220057..220059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1334.t1Ggra1334.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 219175..220059 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1334.t1 ID=Ggra1334.t1|Name=Ggra1334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MEVAADSIGMMAGAYFVGRHQLLRWINELTGLNYSKIEHTASGVFACHVF
DALYPGLLRLEKVKFNAKHSHEFIHNYKILQAAFNRAKLRKRIDVEKLIK
AKYQDNLEFMQWIKAFYDAHASEEALNYDGRLRREEVMSRGAAATSTRSA
RPALASNRPRAHEIGSARAINGSRTMAASMVKRSEFDAVKEENDKLKAEV
ENCETDREFYFNKLRDVEIIIQSVDEKANKGEHDKLDFLAVFDEIKAVLY
ADDAGAAVADDELRDDHHDDSIVNGTAQLSLEDRFDDSVEDEHL*
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spliced messenger RNA

>Ggra1334.t1 ID=Ggra1334.t1|Name=Ggra1334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000092_pilon:219175..220059- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTTGCCGCAGATTCTATCGGCATGATGGCCGGCGCGTACTTCGT
CGGCAGGCACCAGTTGCTGCGCTGGATTAACGAACTCACCGGCTTGAACT
ACAGCAAGATTGAGCACACCGCGTCCGGCGTGTTCGCGTGCCATGTGTTC
GATGCGCTGTACCCCGGCTTGCTGCGCCTGGAAAAGGTCAAGTTCAATGC
CAAGCACTCGCACGAGTTCATCCACAACTACAAGATACTGCAAGCCGCCT
TCAATCGCGCAAAGCTGCGCAAACGCATCGATGTGGAAAAGCTCATCAAG
GCAAAGTACCAGGATAACCTCGAGTTCATGCAGTGGATCAAGGCCTTTTA
CGACGCCCATGCCTCTGAGGAGGCGCTCAATTACGATGGGCGCTTGCGCC
GGGAGGAGGTCATGAGCCGCGGCGCCGCTGCTACTTCCACCCGTTCCGCC
CGCCCGGCCTTGGCTTCCAACCGCCCTCGTGCGCATGAGATTGGCTCCGC
CAGAGCAATCAACGGCTCCAGAACAATGGCCGCTTCTATGGTCAAGCGTT
CCGAATTCGATGCCGTCAAGGAGGAGAACGACAAGCTCAAGGCCGAGGTA
GAAAACTGTGAGACTGATCGTGAGTTTTACTTCAACAAATTGCGCGACGT
TGAAATCATCATCCAGAGCGTCGATGAGAAAGCCAACAAGGGCGAGCACG
ATAAGCTTGACTTCCTCGCCGTCTTCGATGAGATCAAAGCTGTTTTGTAT
GCCGATGATGCAGGCGCCGCCGTCGCTGACGATGAATTGCGGGATGATCA
CCATGATGATTCAATCGTCAATGGAACGGCGCAGCTTTCTTTGGAGGATC
GTTTCGATGACTCTGTTGAAGACGAACATCTCTGA
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protein sequence of Ggra1334.t1

>Ggra1334.t1 ID=Ggra1334.t1|Name=Ggra1334.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MEVAADSIGMMAGAYFVGRHQLLRWINELTGLNYSKIEHTASGVFACHVF
DALYPGLLRLEKVKFNAKHSHEFIHNYKILQAAFNRAKLRKRIDVEKLIK
AKYQDNLEFMQWIKAFYDAHASEEALNYDGRLRREEVMSRGAAATSTRSA
RPALASNRPRAHEIGSARAINGSRTMAASMVKRSEFDAVKEENDKLKAEV
ENCETDREFYFNKLRDVEIIIQSVDEKANKGEHDKLDFLAVFDEIKAVLY
ADDAGAAVADDELRDDHHDDSIVNGTAQLSLEDRFDDSVEDEHL*
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mRNA from alignment at tig00000092_pilon:219175..220059-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1334.t1 ID=Ggra1334.t1|Name=Ggra1334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000092_pilon:219175..220059- (Gracilaria gracilis GNS1m male)
ATGGAGGTTGCCGCAGATTCTATCGGCATGATGGCCGGCGCGTACTTCGT
CGGCAGGCACCAGTTGCTGCGCTGGATTAACGAACTCACCGGCTTGAACT
ACAGCAAGATTGAGCACACCGCGTCCGGCGTGTTCGCGTGCCATGTGTTC
GATGCGCTGTACCCCGGCTTGCTGCGCCTGGAAAAGGTCAAGTTCAATGC
CAAGCACTCGCACGAGTTCATCCACAACTACAAGATACTGCAAGCCGCCT
TCAATCGCGCAAAGCTGCGCAAACGCATCGATGTGGAAAAGCTCATCAAG
GCAAAGTACCAGGATAACCTCGAGTTCATGCAGTGGATCAAGGCCTTTTA
CGACGCCCATGCCTCTGAGGAGGCGCTCAATTACGATGGGCGCTTGCGCC
GGGAGGAGGTCATGAGCCGCGGCGCCGCTGCTACTTCCACCCGTTCCGCC
CGCCCGGCCTTGGCTTCCAACCGCCCTCGTGCGCATGAGATTGGCTCCGC
CAGAGCAATCAACGGCTCCAGAACAATGGCCGCTTCTATGGTCAAGCGTT
CCGAATTCGATGCCGTCAAGGAGGAGAACGACAAGCTCAAGGCCGAGGTA
GAAAACTGTGAGACTGATCGTGAGTTTTACTTCAACAAATTGCGCGACGT
TGAAATCATCATCCAGAGCGTCGATGAGAAAGCCAACAAGGGCGAGCACG
ATAAGCTTGACTTCCTCGCCGTCTTCGATGAGATCAAAGCTGTTTTGTAT
GCCGATGATGCAGGCGCCGCCGTCGCTGACGATGAATTGCGGGATGATCA
CCATGATGATTCAATCGTCAATGGAACGGCGCAGCTTTCTTTGGAGGATC
GTTTCGATGACTCTGTTGAAGACGAACATCTCTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:219175..220059-

>Ggra1334.t1 ID=Ggra1334.t1|Name=Ggra1334.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000092_pilon:219175..220059- (Gracilaria gracilis GNS1m male)
ATGGAGGTTGCCGCAGATTCTATCGGCATGATGGCCGGCGCGTACTTCGT
CGGCAGGCACCAGTTGCTGCGCTGGATTAACGAACTCACCGGCTTGAACT
ACAGCAAGATTGAGCACACCGCGTCCGGCGTGTTCGCGTGCCATGTGTTC
GATGCGCTGTACCCCGGCTTGCTGCGCCTGGAAAAGGTCAAGTTCAATGC
CAAGCACTCGCACGAGTTCATCCACAACTACAAGATACTGCAAGCCGCCT
TCAATCGCGCAAAGCTGCGCAAACGCATCGATGTGGAAAAGCTCATCAAG
GCAAAGTACCAGGATAACCTCGAGTTCATGCAGTGGATCAAGGCCTTTTA
CGACGCCCATGCCTCTGAGGAGGCGCTCAATTACGATGGGCGCTTGCGCC
GGGAGGAGGTCATGAGCCGCGGCGCCGCTGCTACTTCCACCCGTTCCGCC
CGCCCGGCCTTGGCTTCCAACCGCCCTCGTGCGCATGAGATTGGCTCCGC
CAGAGCAATCAACGGCTCCAGAACAATGGCCGCTTCTATGGTCAAGCGTT
CCGAATTCGATGCCGTCAAGGAGGAGAACGACAAGCTCAAGGCCGAGGTA
GAAAACTGTGAGACTGATCGTGAGTTTTACTTCAACAAATTGCGCGACGT
TGAAATCATCATCCAGAGCGTCGATGAGAAAGCCAACAAGGGCGAGCACG
ATAAGCTTGACTTCCTCGCCGTCTTCGATGAGATCAAAGCTGTTTTGTAT
GCCGATGATGCAGGCGCCGCCGTCGCTGACGATGAATTGCGGGATGATCA
CCATGATGATTCAATCGTCAATGGAACGGCGCAGCTTTCTTTGGAGGATC
GTTTCGATGACTCTGTTGAAGACGAACATCTCTGA
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