Ggra1333.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1333.t1
Unique Name	Ggra1333.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	430

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:217369..218658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003293126.1
PFAMs	Aminotran_1_2
Max annot lvl	554915\|Amoebozoa
KEGG rclass	RC00006
KEGG ko	ko:K14455
KEGG Reaction	R00355,R00694,R00734,R00896,R02433,R02619,R05052
KEGG Pathway	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00710,ko00950,ko00960,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04975,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00710,map00950,map00960,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04975
KEGG Module	M00170,M00171
GOs	GO:0003674,GO:0003824,GO:0004069,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006103,GO:0006520,GO:0006531,GO:0006532,GO:0006533,GO:0006536,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009066,GO:0009067,GO:0009068,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043649,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0051186,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Evalue	5.6e-152
EggNOG OGs	COG1448@1\|root,KOG1411@2759\|Eukaryota,3XGCU@554915\|Amoebozoa
EC	2.6.1.1
Description	Aminotransferase class I and II
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1333	Ggra1333	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 217369..218658 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1333.t1.start1	Ggra1333.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 217369..217371 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1333.t1.CDS1	Ggra1333.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 217369..218658 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1333.t1.exon1	Ggra1333.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 217369..218658 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1333.t1.stop1	Ggra1333.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 218656..218658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1333.t1	Ggra1333.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 217369..218658 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:217369..218658+
coding sequence from alignment at tig00000092_pilon:217369..218658+

mRNA sequence

>Ggra1333.t1 ID=Ggra1333.t1|Name=Ggra1333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MARLLSLRRLTTLASHAVKPAPPSRFAATPKGPEDAILGVTLAYNADPNP
KKINLGVGAYRDDAGLPVVLDAVRHAEQRVLDRSLDMEYLPVAGSHTFLQ
RAIWLAYGDNVVHRMSGRFAGLQTLSGTGACRMAGELISRYLDFEQRSEK
PLVLLPNPSWANHRAIFADAGCHVASYSYYDPSTKSLDIDACLHSLENAP
DGSVVLLHACAHNPTGVDPSMEQWAAISNVIMHKSHLPLFDMAYQGFTSG
DMDVDAASVRLFAEEGHKIVLAQSFSKNFGLYGQRVGCLSVMTDSEQETQ
AINSQLKIIARPMYSNPPIAGVRLVEEILNCEDLQAMWRNEMKGMAERII
SMRSRLRQHLIEMGNEHNWDHIVNQHGMFCFSGLSKEQVDRLRDEFSVYL
TANGRISMAGVTSDNVDYLADAIHLVTSS*

spliced messenger RNA

>Ggra1333.t1 ID=Ggra1333.t1|Name=Ggra1333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000092_pilon:217369..218658+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCCTCTTGTCGTTGAGACGTCTCACCACGTTGGCCTCGCACGC
CGTCAAGCCCGCGCCGCCTTCGCGCTTCGCCGCCACCCCAAAGGGCCCGG
AGGACGCCATTCTCGGCGTCACGTTGGCATACAACGCCGATCCCAACCCC
AAAAAGATTAACCTCGGCGTTGGTGCATACCGCGATGATGCCGGCCTCCC
CGTGGTGTTGGACGCCGTGCGTCACGCCGAGCAGCGTGTGTTGGATCGCT
CGCTTGACATGGAGTATCTCCCCGTCGCCGGCAGCCACACCTTCCTGCAG
CGCGCCATCTGGCTTGCCTATGGCGACAACGTCGTGCACAGGATGAGTGG
ACGCTTTGCTGGCTTGCAGACGCTGTCTGGAACCGGTGCTTGTCGAATGG
CTGGTGAGCTCATCTCCAGGTATTTGGACTTTGAGCAGCGGAGTGAGAAG
CCCTTAGTATTGCTTCCAAACCCGTCGTGGGCCAATCATCGTGCCATATT
TGCCGACGCCGGATGTCATGTCGCTTCGTATTCCTATTATGACCCGAGCA
CCAAGAGTCTGGACATTGATGCCTGCCTGCACAGCTTGGAGAATGCCCCC
GATGGTAGTGTGGTTCTGCTTCATGCCTGTGCACACAATCCTACAGGCGT
TGATCCCAGCATGGAACAGTGGGCTGCCATAAGCAATGTCATCATGCACA
AGTCTCACCTTCCGCTGTTTGACATGGCCTATCAGGGATTCACTAGTGGT
GATATGGATGTTGATGCCGCCAGTGTCCGTCTGTTTGCAGAGGAGGGTCA
TAAGATTGTGCTCGCCCAGTCCTTTTCCAAGAACTTTGGCCTCTATGGAC
AAAGGGTTGGTTGCTTGTCTGTCATGACTGATAGTGAGCAAGAAACGCAA
GCCATTAACTCACAGCTCAAGATTATTGCCAGACCCATGTACTCAAACCC
GCCCATCGCCGGCGTAAGACTTGTTGAAGAGATCCTCAACTGCGAAGACT
TGCAGGCCATGTGGCGAAACGAGATGAAGGGCATGGCCGAACGCATTATT
TCTATGAGAAGTAGACTGAGGCAGCATTTGATCGAAATGGGAAACGAGCA
TAACTGGGATCACATTGTGAATCAACATGGAATGTTCTGCTTTTCCGGCC
TATCCAAGGAGCAGGTTGATAGGTTGAGAGATGAGTTCTCCGTGTACCTT
ACCGCCAATGGTCGAATTTCCATGGCTGGTGTCACTTCCGATAATGTTGA
TTACTTGGCTGATGCAATTCATCTCGTAACCAGTTCTTAG

protein sequence of Ggra1333.t1

>Ggra1333.t1 ID=Ggra1333.t1|Name=Ggra1333.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MARLLSLRRLTTLASHAVKPAPPSRFAATPKGPEDAILGVTLAYNADPNP
KKINLGVGAYRDDAGLPVVLDAVRHAEQRVLDRSLDMEYLPVAGSHTFLQ
RAIWLAYGDNVVHRMSGRFAGLQTLSGTGACRMAGELISRYLDFEQRSEK
PLVLLPNPSWANHRAIFADAGCHVASYSYYDPSTKSLDIDACLHSLENAP
DGSVVLLHACAHNPTGVDPSMEQWAAISNVIMHKSHLPLFDMAYQGFTSG
DMDVDAASVRLFAEEGHKIVLAQSFSKNFGLYGQRVGCLSVMTDSEQETQ
AINSQLKIIARPMYSNPPIAGVRLVEEILNCEDLQAMWRNEMKGMAERII
SMRSRLRQHLIEMGNEHNWDHIVNQHGMFCFSGLSKEQVDRLRDEFSVYL
TANGRISMAGVTSDNVDYLADAIHLVTSS*

mRNA from alignment at tig00000092_pilon:217369..218658+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1333.t1 ID=Ggra1333.t1|Name=Ggra1333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000092_pilon:217369..218658+ (Gracilaria gracilis GNS1m male)
ATGGCGCGCCTCTTGTCGTTGAGACGTCTCACCACGTTGGCCTCGCACGC
CGTCAAGCCCGCGCCGCCTTCGCGCTTCGCCGCCACCCCAAAGGGCCCGG
AGGACGCCATTCTCGGCGTCACGTTGGCATACAACGCCGATCCCAACCCC
AAAAAGATTAACCTCGGCGTTGGTGCATACCGCGATGATGCCGGCCTCCC
CGTGGTGTTGGACGCCGTGCGTCACGCCGAGCAGCGTGTGTTGGATCGCT
CGCTTGACATGGAGTATCTCCCCGTCGCCGGCAGCCACACCTTCCTGCAG
CGCGCCATCTGGCTTGCCTATGGCGACAACGTCGTGCACAGGATGAGTGG
ACGCTTTGCTGGCTTGCAGACGCTGTCTGGAACCGGTGCTTGTCGAATGG
CTGGTGAGCTCATCTCCAGGTATTTGGACTTTGAGCAGCGGAGTGAGAAG
CCCTTAGTATTGCTTCCAAACCCGTCGTGGGCCAATCATCGTGCCATATT
TGCCGACGCCGGATGTCATGTCGCTTCGTATTCCTATTATGACCCGAGCA
CCAAGAGTCTGGACATTGATGCCTGCCTGCACAGCTTGGAGAATGCCCCC
GATGGTAGTGTGGTTCTGCTTCATGCCTGTGCACACAATCCTACAGGCGT
TGATCCCAGCATGGAACAGTGGGCTGCCATAAGCAATGTCATCATGCACA
AGTCTCACCTTCCGCTGTTTGACATGGCCTATCAGGGATTCACTAGTGGT
GATATGGATGTTGATGCCGCCAGTGTCCGTCTGTTTGCAGAGGAGGGTCA
TAAGATTGTGCTCGCCCAGTCCTTTTCCAAGAACTTTGGCCTCTATGGAC
AAAGGGTTGGTTGCTTGTCTGTCATGACTGATAGTGAGCAAGAAACGCAA
GCCATTAACTCACAGCTCAAGATTATTGCCAGACCCATGTACTCAAACCC
GCCCATCGCCGGCGTAAGACTTGTTGAAGAGATCCTCAACTGCGAAGACT
TGCAGGCCATGTGGCGAAACGAGATGAAGGGCATGGCCGAACGCATTATT
TCTATGAGAAGTAGACTGAGGCAGCATTTGATCGAAATGGGAAACGAGCA
TAACTGGGATCACATTGTGAATCAACATGGAATGTTCTGCTTTTCCGGCC
TATCCAAGGAGCAGGTTGATAGGTTGAGAGATGAGTTCTCCGTGTACCTT
ACCGCCAATGGTCGAATTTCCATGGCTGGTGTCACTTCCGATAATGTTGA
TTACTTGGCTGATGCAATTCATCTCGTAACCAGTTCTTAG

Coding sequence (CDS) from alignment at tig00000092_pilon:217369..218658+

>Ggra1333.t1 ID=Ggra1333.t1|Name=Ggra1333.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000092_pilon:217369..218658+ (Gracilaria gracilis GNS1m male)
ATGGCGCGCCTCTTGTCGTTGAGACGTCTCACCACGTTGGCCTCGCACGC
CGTCAAGCCCGCGCCGCCTTCGCGCTTCGCCGCCACCCCAAAGGGCCCGG
AGGACGCCATTCTCGGCGTCACGTTGGCATACAACGCCGATCCCAACCCC
AAAAAGATTAACCTCGGCGTTGGTGCATACCGCGATGATGCCGGCCTCCC
CGTGGTGTTGGACGCCGTGCGTCACGCCGAGCAGCGTGTGTTGGATCGCT
CGCTTGACATGGAGTATCTCCCCGTCGCCGGCAGCCACACCTTCCTGCAG
CGCGCCATCTGGCTTGCCTATGGCGACAACGTCGTGCACAGGATGAGTGG
ACGCTTTGCTGGCTTGCAGACGCTGTCTGGAACCGGTGCTTGTCGAATGG
CTGGTGAGCTCATCTCCAGGTATTTGGACTTTGAGCAGCGGAGTGAGAAG
CCCTTAGTATTGCTTCCAAACCCGTCGTGGGCCAATCATCGTGCCATATT
TGCCGACGCCGGATGTCATGTCGCTTCGTATTCCTATTATGACCCGAGCA
CCAAGAGTCTGGACATTGATGCCTGCCTGCACAGCTTGGAGAATGCCCCC
GATGGTAGTGTGGTTCTGCTTCATGCCTGTGCACACAATCCTACAGGCGT
TGATCCCAGCATGGAACAGTGGGCTGCCATAAGCAATGTCATCATGCACA
AGTCTCACCTTCCGCTGTTTGACATGGCCTATCAGGGATTCACTAGTGGT
GATATGGATGTTGATGCCGCCAGTGTCCGTCTGTTTGCAGAGGAGGGTCA
TAAGATTGTGCTCGCCCAGTCCTTTTCCAAGAACTTTGGCCTCTATGGAC
AAAGGGTTGGTTGCTTGTCTGTCATGACTGATAGTGAGCAAGAAACGCAA
GCCATTAACTCACAGCTCAAGATTATTGCCAGACCCATGTACTCAAACCC
GCCCATCGCCGGCGTAAGACTTGTTGAAGAGATCCTCAACTGCGAAGACT
TGCAGGCCATGTGGCGAAACGAGATGAAGGGCATGGCCGAACGCATTATT
TCTATGAGAAGTAGACTGAGGCAGCATTTGATCGAAATGGGAAACGAGCA
TAACTGGGATCACATTGTGAATCAACATGGAATGTTCTGCTTTTCCGGCC
TATCCAAGGAGCAGGTTGATAGGTTGAGAGATGAGTTCTCCGTGTACCTT
ACCGCCAATGGTCGAATTTCCATGGCTGGTGTCACTTCCGATAATGTTGA
TTACTTGGCTGATGCAATTCATCTCGTAACCAGTTCTTAG