Ggra1329.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1329.t1
Unique NameGgra1329.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:118280..119233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1329Ggra1329Gracilaria gracilis GNS1m malegenetig00000092_pilon 118280..119233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1329.t1Ggra1329.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 118280..119233 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1329.t1.start1Ggra1329.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 118280..118282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1329.t1.CDS1Ggra1329.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 118280..118406 +
Ggra1329.t1.CDS2Ggra1329.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 118542..119233 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1329.t1.exon1Ggra1329.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 118280..118406 +
Ggra1329.t1.exon2Ggra1329.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 118542..119233 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1329.t1.intron1Ggra1329.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 118407..118541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1329.t1.stop1Ggra1329.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 119231..119233 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1329.t1 ID=Ggra1329.t1|Name=Ggra1329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MIPSSLFCGALVADRVLSHDKLESALVRSTNKVCCPRQCSINGKTYSTQC
GNGNGNVLEDEPQEIERLRPSMDAIKNVRHREDIEHGLSENGDKQVCNGV
TSTGEELQGIQKDIAKGAKGRSSGKTRFIRSRVMVKKVRALLGRLSDKLD
CLRKRSSGATDSGQLDFADAPTSDIPLAPAEDRQDMKTNNSVPGAQAGTQ
PSLGRGERFGKHRAKQEEVAEEPEENELLLGNRVNETPLQVKSRVGNGED
LPAVEKGLVLRTLAKLRSAASR*
back to top

spliced messenger RNA

>Ggra1329.t1 ID=Ggra1329.t1|Name=Ggra1329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000092_pilon:118280..119233+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCTAGTAGCCTGTTTTGTGGAGCTCTTGTGGCTGACAGAGTGCT
CTCTCATGACAAGTTGGAGAGTGCCCTTGTGCGGAGCACGAACAAAGTTT
GCTGTCCTCGTCAGTGCAGTATAAATGGCAAAACGTATTCTACACAGTGC
GGGAACGGGAATGGTAATGTGTTGGAAGACGAGCCGCAAGAGATAGAGCG
TCTGAGGCCTTCGATGGATGCCATAAAGAACGTGAGGCACAGGGAAGACA
TAGAACACGGCCTTAGCGAAAATGGAGACAAACAGGTATGCAACGGAGTG
ACCAGCACGGGAGAGGAACTTCAGGGAATCCAGAAGGACATCGCCAAGGG
TGCAAAGGGTCGTAGTTCTGGAAAGACTCGGTTCATTCGGTCGAGAGTCA
TGGTTAAGAAAGTTCGAGCCCTTCTGGGGAGGCTGTCCGATAAATTGGAT
TGTTTGAGAAAGCGCAGCTCAGGAGCGACAGATAGTGGCCAACTCGACTT
TGCAGATGCTCCCACCAGCGACATTCCACTTGCGCCTGCGGAGGATAGAC
AGGATATGAAGACAAACAACTCTGTACCTGGAGCACAAGCGGGTACACAG
CCTAGTCTGGGACGAGGAGAGAGATTTGGAAAACACAGAGCTAAGCAAGA
AGAGGTTGCGGAAGAACCAGAAGAGAATGAGTTACTACTAGGTAATAGGG
TGAACGAGACTCCTCTCCAAGTGAAGAGCAGGGTTGGGAATGGAGAGGAT
CTGCCGGCAGTAGAAAAGGGATTGGTGCTTCGGACGCTGGCCAAGCTGCG
ATCCGCAGCTTCACGTTAA
back to top

protein sequence of Ggra1329.t1

>Ggra1329.t1 ID=Ggra1329.t1|Name=Ggra1329.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MIPSSLFCGALVADRVLSHDKLESALVRSTNKVCCPRQCSINGKTYSTQC
GNGNGNVLEDEPQEIERLRPSMDAIKNVRHREDIEHGLSENGDKQVCNGV
TSTGEELQGIQKDIAKGAKGRSSGKTRFIRSRVMVKKVRALLGRLSDKLD
CLRKRSSGATDSGQLDFADAPTSDIPLAPAEDRQDMKTNNSVPGAQAGTQ
PSLGRGERFGKHRAKQEEVAEEPEENELLLGNRVNETPLQVKSRVGNGED
LPAVEKGLVLRTLAKLRSAASR*
back to top

mRNA from alignment at tig00000092_pilon:118280..119233+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1329.t1 ID=Ggra1329.t1|Name=Ggra1329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000092_pilon:118280..119233+ (Gracilaria gracilis GNS1m male)
ATGATTCCTAGTAGCCTGTTTTGTGGAGCTCTTGTGGCTGACAGAGTGCT
CTCTCATGACAAGTTGGAGAGTGCCCTTGTGCGGAGCACGAACAAAGTTT
GCTGTCCTCGTCAGTGCAGTATAAATGGTAAGCATATGGATGGGGACGAC
AATGCAGAAAGTCTTGGTCGTCGCACTCCATCCAAACTCGTGATCAACGA
AGAAACTTCTGGCTTCAAACACAGTCTCTTAATGTGCATTCTGACAGTAG
TGAATATGGAAGGCAAAACGTATTCTACACAGTGCGGGAACGGGAATGGT
AATGTGTTGGAAGACGAGCCGCAAGAGATAGAGCGTCTGAGGCCTTCGAT
GGATGCCATAAAGAACGTGAGGCACAGGGAAGACATAGAACACGGCCTTA
GCGAAAATGGAGACAAACAGGTATGCAACGGAGTGACCAGCACGGGAGAG
GAACTTCAGGGAATCCAGAAGGACATCGCCAAGGGTGCAAAGGGTCGTAG
TTCTGGAAAGACTCGGTTCATTCGGTCGAGAGTCATGGTTAAGAAAGTTC
GAGCCCTTCTGGGGAGGCTGTCCGATAAATTGGATTGTTTGAGAAAGCGC
AGCTCAGGAGCGACAGATAGTGGCCAACTCGACTTTGCAGATGCTCCCAC
CAGCGACATTCCACTTGCGCCTGCGGAGGATAGACAGGATATGAAGACAA
ACAACTCTGTACCTGGAGCACAAGCGGGTACACAGCCTAGTCTGGGACGA
GGAGAGAGATTTGGAAAACACAGAGCTAAGCAAGAAGAGGTTGCGGAAGA
ACCAGAAGAGAATGAGTTACTACTAGGTAATAGGGTGAACGAGACTCCTC
TCCAAGTGAAGAGCAGGGTTGGGAATGGAGAGGATCTGCCGGCAGTAGAA
AAGGGATTGGTGCTTCGGACGCTGGCCAAGCTGCGATCCGCAGCTTCACG
TTAA
back to top

Coding sequence (CDS) from alignment at tig00000092_pilon:118280..119233+

>Ggra1329.t1 ID=Ggra1329.t1|Name=Ggra1329.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000092_pilon:118280..119233+ (Gracilaria gracilis GNS1m male)
ATGATTCCTAGTAGCCTGTTTTGTGGAGCTCTTGTGGCTGACAGAGTGCT
CTCTCATGACAAGTTGGAGAGTGCCCTTGTGCGGAGCACGAACAAAGTTT
GCTGTCCTCGTCAGTGCAGTATAAATGGCAAAACGTATTCTACACAGTGC
GGGAACGGGAATGGTAATGTGTTGGAAGACGAGCCGCAAGAGATAGAGCG
TCTGAGGCCTTCGATGGATGCCATAAAGAACGTGAGGCACAGGGAAGACA
TAGAACACGGCCTTAGCGAAAATGGAGACAAACAGGTATGCAACGGAGTG
ACCAGCACGGGAGAGGAACTTCAGGGAATCCAGAAGGACATCGCCAAGGG
TGCAAAGGGTCGTAGTTCTGGAAAGACTCGGTTCATTCGGTCGAGAGTCA
TGGTTAAGAAAGTTCGAGCCCTTCTGGGGAGGCTGTCCGATAAATTGGAT
TGTTTGAGAAAGCGCAGCTCAGGAGCGACAGATAGTGGCCAACTCGACTT
TGCAGATGCTCCCACCAGCGACATTCCACTTGCGCCTGCGGAGGATAGAC
AGGATATGAAGACAAACAACTCTGTACCTGGAGCACAAGCGGGTACACAG
CCTAGTCTGGGACGAGGAGAGAGATTTGGAAAACACAGAGCTAAGCAAGA
AGAGGTTGCGGAAGAACCAGAAGAGAATGAGTTACTACTAGGTAATAGGG
TGAACGAGACTCCTCTCCAAGTGAAGAGCAGGGTTGGGAATGGAGAGGAT
CTGCCGGCAGTAGAAAAGGGATTGGTGCTTCGGACGCTGGCCAAGCTGCG
ATCCGCAGCTTCACGTTAA
back to top