Ggra1327.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1327.t1
Unique NameGgra1327.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:115021..116088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G8U0
PFAMsMem_trans
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Evalue4.07e-37
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1327Ggra1327Gracilaria gracilis GNS1m malegenetig00000092_pilon 115021..116088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1327.t1.stop1Ggra1327.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 115021..115023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1327.t1.CDS1Ggra1327.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 115021..116088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1327.t1.exon1Ggra1327.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 115021..116088 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1327.t1.start1Ggra1327.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 116086..116088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1327.t1Ggra1327.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 115021..116088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1327.t1 ID=Ggra1327.t1|Name=Ggra1327.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MVLGVGGGLQGATVAGGIVLNALAKLLSTVGLGVLAAKRGILDAATLSAL
SRLVYNVMLPALLFTNVLKTFNSGVSVQLALLPLAAVVQIFVGLLFSLLV
ARVLKLNRSERGLFYVCGSFGNSAAMPLLLCASLFSGAKQVGSISAVSFY
LLGWSPLFWSVGFSLLDTVPSTTAQAEDEKKSSMTMSQFLKKLITPPLIA
AVSALLIGVNPFVRGLVLRTPIPGAMQTLGSGYAAAAVLVLAGSLARKTP
SDQPNSSSALRIGRLSLGLSLCRFVLLPLFVFFCVLRLRIDDSFVKFAIL
LQSVMPCAQNVTVMLTLLNRPNAAAVAARLLLTVYLIGVVPIALGLTLFL
AASGL*
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spliced messenger RNA

>Ggra1327.t1 ID=Ggra1327.t1|Name=Ggra1327.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000092_pilon:115021..116088- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGGGAGTGGGCGGCGGCTTGCAGGGCGCGACGGTGGCTGGTGG
TATAGTGTTAAATGCGCTGGCGAAGCTTTTGAGCACGGTGGGATTGGGGG
TACTTGCCGCGAAGCGAGGTATATTAGATGCGGCCACGCTATCGGCATTA
TCTCGACTTGTTTACAACGTGATGTTACCGGCTTTGTTGTTCACAAACGT
GCTGAAGACGTTTAATAGCGGCGTTTCTGTACAGCTTGCTTTGCTACCCC
TTGCGGCGGTGGTGCAGATCTTCGTTGGGTTGCTGTTCTCGTTGCTGGTA
GCCAGGGTTTTGAAGTTAAATCGCAGCGAACGGGGACTGTTTTACGTCTG
CGGGTCATTCGGAAATTCGGCTGCGATGCCTTTGCTGTTGTGCGCATCAC
TGTTTTCGGGTGCCAAGCAAGTGGGCAGTATATCTGCAGTGTCATTTTAC
TTGTTAGGGTGGTCTCCGTTGTTCTGGTCGGTCGGGTTTTCACTCTTGGA
TACAGTGCCTTCTACAACGGCTCAAGCGGAAGATGAGAAGAAGAGTTCAA
TGACCATGTCGCAATTCCTCAAGAAGCTCATAACCCCGCCGTTGATAGCG
GCTGTGAGCGCGTTGTTGATTGGGGTGAACCCGTTTGTGCGTGGACTGGT
ATTACGAACACCGATTCCAGGCGCCATGCAAACGCTGGGGTCGGGCTACG
CCGCAGCCGCCGTACTCGTGTTAGCGGGCTCTCTCGCGCGAAAAACACCG
AGTGACCAACCGAATTCGTCGTCGGCGCTTCGCATCGGTCGCCTGTCGCT
GGGACTTTCGCTCTGTCGATTTGTTTTGTTGCCGTTGTTTGTGTTCTTCT
GCGTGTTGAGGCTGCGAATTGATGACTCGTTCGTGAAGTTTGCCATCCTG
TTGCAGAGTGTGATGCCTTGCGCGCAGAACGTGACGGTGATGCTGACGTT
GCTGAATCGACCCAATGCAGCGGCGGTGGCGGCCAGACTGCTGTTGACGG
TTTACTTGATTGGAGTTGTCCCCATCGCGCTGGGGCTCACGTTGTTTCTT
GCGGCTTCGGGGCTCTGA
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protein sequence of Ggra1327.t1

>Ggra1327.t1 ID=Ggra1327.t1|Name=Ggra1327.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MVLGVGGGLQGATVAGGIVLNALAKLLSTVGLGVLAAKRGILDAATLSAL
SRLVYNVMLPALLFTNVLKTFNSGVSVQLALLPLAAVVQIFVGLLFSLLV
ARVLKLNRSERGLFYVCGSFGNSAAMPLLLCASLFSGAKQVGSISAVSFY
LLGWSPLFWSVGFSLLDTVPSTTAQAEDEKKSSMTMSQFLKKLITPPLIA
AVSALLIGVNPFVRGLVLRTPIPGAMQTLGSGYAAAAVLVLAGSLARKTP
SDQPNSSSALRIGRLSLGLSLCRFVLLPLFVFFCVLRLRIDDSFVKFAIL
LQSVMPCAQNVTVMLTLLNRPNAAAVAARLLLTVYLIGVVPIALGLTLFL
AASGL*
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mRNA from alignment at tig00000092_pilon:115021..116088-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1327.t1 ID=Ggra1327.t1|Name=Ggra1327.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000092_pilon:115021..116088- (Gracilaria gracilis GNS1m male)
ATGGTGCTGGGAGTGGGCGGCGGCTTGCAGGGCGCGACGGTGGCTGGTGG
TATAGTGTTAAATGCGCTGGCGAAGCTTTTGAGCACGGTGGGATTGGGGG
TACTTGCCGCGAAGCGAGGTATATTAGATGCGGCCACGCTATCGGCATTA
TCTCGACTTGTTTACAACGTGATGTTACCGGCTTTGTTGTTCACAAACGT
GCTGAAGACGTTTAATAGCGGCGTTTCTGTACAGCTTGCTTTGCTACCCC
TTGCGGCGGTGGTGCAGATCTTCGTTGGGTTGCTGTTCTCGTTGCTGGTA
GCCAGGGTTTTGAAGTTAAATCGCAGCGAACGGGGACTGTTTTACGTCTG
CGGGTCATTCGGAAATTCGGCTGCGATGCCTTTGCTGTTGTGCGCATCAC
TGTTTTCGGGTGCCAAGCAAGTGGGCAGTATATCTGCAGTGTCATTTTAC
TTGTTAGGGTGGTCTCCGTTGTTCTGGTCGGTCGGGTTTTCACTCTTGGA
TACAGTGCCTTCTACAACGGCTCAAGCGGAAGATGAGAAGAAGAGTTCAA
TGACCATGTCGCAATTCCTCAAGAAGCTCATAACCCCGCCGTTGATAGCG
GCTGTGAGCGCGTTGTTGATTGGGGTGAACCCGTTTGTGCGTGGACTGGT
ATTACGAACACCGATTCCAGGCGCCATGCAAACGCTGGGGTCGGGCTACG
CCGCAGCCGCCGTACTCGTGTTAGCGGGCTCTCTCGCGCGAAAAACACCG
AGTGACCAACCGAATTCGTCGTCGGCGCTTCGCATCGGTCGCCTGTCGCT
GGGACTTTCGCTCTGTCGATTTGTTTTGTTGCCGTTGTTTGTGTTCTTCT
GCGTGTTGAGGCTGCGAATTGATGACTCGTTCGTGAAGTTTGCCATCCTG
TTGCAGAGTGTGATGCCTTGCGCGCAGAACGTGACGGTGATGCTGACGTT
GCTGAATCGACCCAATGCAGCGGCGGTGGCGGCCAGACTGCTGTTGACGG
TTTACTTGATTGGAGTTGTCCCCATCGCGCTGGGGCTCACGTTGTTTCTT
GCGGCTTCGGGGCTCTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:115021..116088-

>Ggra1327.t1 ID=Ggra1327.t1|Name=Ggra1327.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000092_pilon:115021..116088- (Gracilaria gracilis GNS1m male)
ATGGTGCTGGGAGTGGGCGGCGGCTTGCAGGGCGCGACGGTGGCTGGTGG
TATAGTGTTAAATGCGCTGGCGAAGCTTTTGAGCACGGTGGGATTGGGGG
TACTTGCCGCGAAGCGAGGTATATTAGATGCGGCCACGCTATCGGCATTA
TCTCGACTTGTTTACAACGTGATGTTACCGGCTTTGTTGTTCACAAACGT
GCTGAAGACGTTTAATAGCGGCGTTTCTGTACAGCTTGCTTTGCTACCCC
TTGCGGCGGTGGTGCAGATCTTCGTTGGGTTGCTGTTCTCGTTGCTGGTA
GCCAGGGTTTTGAAGTTAAATCGCAGCGAACGGGGACTGTTTTACGTCTG
CGGGTCATTCGGAAATTCGGCTGCGATGCCTTTGCTGTTGTGCGCATCAC
TGTTTTCGGGTGCCAAGCAAGTGGGCAGTATATCTGCAGTGTCATTTTAC
TTGTTAGGGTGGTCTCCGTTGTTCTGGTCGGTCGGGTTTTCACTCTTGGA
TACAGTGCCTTCTACAACGGCTCAAGCGGAAGATGAGAAGAAGAGTTCAA
TGACCATGTCGCAATTCCTCAAGAAGCTCATAACCCCGCCGTTGATAGCG
GCTGTGAGCGCGTTGTTGATTGGGGTGAACCCGTTTGTGCGTGGACTGGT
ATTACGAACACCGATTCCAGGCGCCATGCAAACGCTGGGGTCGGGCTACG
CCGCAGCCGCCGTACTCGTGTTAGCGGGCTCTCTCGCGCGAAAAACACCG
AGTGACCAACCGAATTCGTCGTCGGCGCTTCGCATCGGTCGCCTGTCGCT
GGGACTTTCGCTCTGTCGATTTGTTTTGTTGCCGTTGTTTGTGTTCTTCT
GCGTGTTGAGGCTGCGAATTGATGACTCGTTCGTGAAGTTTGCCATCCTG
TTGCAGAGTGTGATGCCTTGCGCGCAGAACGTGACGGTGATGCTGACGTT
GCTGAATCGACCCAATGCAGCGGCGGTGGCGGCCAGACTGCTGTTGACGG
TTTACTTGATTGGAGTTGTCCCCATCGCGCTGGGGCTCACGTTGTTTCTT
GCGGCTTCGGGGCTCTGA
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