Ggra1326.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1326.t1
Unique NameGgra1326.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:113665..114750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog43989.cce_2734
Max annot lvl1117|Cyanobacteria
Evalue9.77e-18
EggNOG OGs2DPNW@1|root,332TP@2|Bacteria,1GGXC@1117|Cyanobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1326Ggra1326Gracilaria gracilis GNS1m malegenetig00000092_pilon 113665..114750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1326.t1.stop1Ggra1326.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 113665..113667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1326.t1.CDS1Ggra1326.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 113665..114750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1326.t1.exon1Ggra1326.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 113665..114750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1326.t1.start1Ggra1326.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 114748..114750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1326.t1Ggra1326.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 113665..114750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1326.t1 ID=Ggra1326.t1|Name=Ggra1326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MPAPLDRIGAKRTLLILWRSWQRLVQKGVPYNNRRISLSRILATWALVLF
SVRVINILLRIASPERTALSYRTRASFAVDTQFWHGRHLIFCVSPGRSGS
KYLRNVLDVAQNVISRHEPEPKMTGTYLQRVVLQGMRKETFEERAKLKLA
AIRQALEATSPDVTYAETSHMFVKTFADVVLHHLADSANISIVILHRPAR
DSIWSQLRLGWFSPGHSGKNVWYYDINDVHEKERHVSFSTNSSNPIDSLI
GYNSDVLQRGIELKRLVQNRHSHGLWSNVHVIETWLHTVSDTENGVKDFL
SSLGLKIDLHRLAQLRTLDMNARDVKKDKFVTTATIDDVDARIAYMLNKL
PLPRQALQRPV*
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spliced messenger RNA

>Ggra1326.t1 ID=Ggra1326.t1|Name=Ggra1326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000092_pilon:113665..114750- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCACCACTCGACCGAATCGGCGCCAAGCGAACGCTGCTCATACT
GTGGCGGTCTTGGCAGCGTCTCGTGCAGAAGGGTGTGCCATACAACAACC
GTCGCATCTCCCTCTCCCGCATCCTCGCAACATGGGCGCTCGTACTCTTC
TCTGTGCGCGTTATCAACATCTTGCTCCGTATAGCAAGCCCAGAACGCAC
CGCACTTTCGTATAGAACCAGGGCTTCGTTCGCTGTTGACACGCAGTTCT
GGCATGGTAGACACCTCATTTTCTGCGTTTCCCCTGGACGATCGGGGTCA
AAGTATCTGCGAAACGTTCTTGACGTCGCGCAGAATGTCATTTCCAGACA
TGAACCGGAGCCTAAGATGACTGGCACCTATCTGCAACGCGTCGTTCTAC
AGGGTATGAGAAAAGAAACGTTTGAAGAACGAGCCAAGCTAAAGCTGGCC
GCCATTCGACAGGCTTTAGAAGCAACTTCCCCGGATGTTACGTACGCGGA
AACGAGTCATATGTTTGTCAAGACGTTTGCAGATGTTGTTTTGCATCACT
TAGCAGACAGCGCCAACATCTCCATCGTTATTCTACACCGACCTGCGAGA
GATTCAATATGGAGTCAGCTTCGCTTAGGATGGTTTTCGCCGGGTCACTC
CGGGAAGAATGTGTGGTATTACGATATCAACGATGTTCACGAGAAAGAAC
GACATGTCTCATTCTCCACAAATTCATCTAATCCAATCGATTCTCTGATC
GGATATAACTCCGATGTGTTACAACGAGGCATCGAGCTCAAGAGACTTGT
TCAAAATAGGCATAGTCACGGATTATGGAGCAACGTGCATGTGATCGAAA
CTTGGCTGCATACCGTTTCTGACACAGAAAACGGCGTCAAAGACTTTCTC
TCATCATTGGGACTTAAGATTGATCTGCACAGACTGGCTCAACTCAGGAC
GTTGGATATGAATGCCAGAGATGTCAAGAAGGACAAATTCGTCACCACAG
CTACCATTGACGACGTGGATGCACGAATCGCTTATATGCTCAACAAGTTA
CCTTTGCCACGACAAGCTCTACAACGCCCCGTGTAA
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protein sequence of Ggra1326.t1

>Ggra1326.t1 ID=Ggra1326.t1|Name=Ggra1326.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MPAPLDRIGAKRTLLILWRSWQRLVQKGVPYNNRRISLSRILATWALVLF
SVRVINILLRIASPERTALSYRTRASFAVDTQFWHGRHLIFCVSPGRSGS
KYLRNVLDVAQNVISRHEPEPKMTGTYLQRVVLQGMRKETFEERAKLKLA
AIRQALEATSPDVTYAETSHMFVKTFADVVLHHLADSANISIVILHRPAR
DSIWSQLRLGWFSPGHSGKNVWYYDINDVHEKERHVSFSTNSSNPIDSLI
GYNSDVLQRGIELKRLVQNRHSHGLWSNVHVIETWLHTVSDTENGVKDFL
SSLGLKIDLHRLAQLRTLDMNARDVKKDKFVTTATIDDVDARIAYMLNKL
PLPRQALQRPV*
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mRNA from alignment at tig00000092_pilon:113665..114750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1326.t1 ID=Ggra1326.t1|Name=Ggra1326.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000092_pilon:113665..114750- (Gracilaria gracilis GNS1m male)
ATGCCCGCACCACTCGACCGAATCGGCGCCAAGCGAACGCTGCTCATACT
GTGGCGGTCTTGGCAGCGTCTCGTGCAGAAGGGTGTGCCATACAACAACC
GTCGCATCTCCCTCTCCCGCATCCTCGCAACATGGGCGCTCGTACTCTTC
TCTGTGCGCGTTATCAACATCTTGCTCCGTATAGCAAGCCCAGAACGCAC
CGCACTTTCGTATAGAACCAGGGCTTCGTTCGCTGTTGACACGCAGTTCT
GGCATGGTAGACACCTCATTTTCTGCGTTTCCCCTGGACGATCGGGGTCA
AAGTATCTGCGAAACGTTCTTGACGTCGCGCAGAATGTCATTTCCAGACA
TGAACCGGAGCCTAAGATGACTGGCACCTATCTGCAACGCGTCGTTCTAC
AGGGTATGAGAAAAGAAACGTTTGAAGAACGAGCCAAGCTAAAGCTGGCC
GCCATTCGACAGGCTTTAGAAGCAACTTCCCCGGATGTTACGTACGCGGA
AACGAGTCATATGTTTGTCAAGACGTTTGCAGATGTTGTTTTGCATCACT
TAGCAGACAGCGCCAACATCTCCATCGTTATTCTACACCGACCTGCGAGA
GATTCAATATGGAGTCAGCTTCGCTTAGGATGGTTTTCGCCGGGTCACTC
CGGGAAGAATGTGTGGTATTACGATATCAACGATGTTCACGAGAAAGAAC
GACATGTCTCATTCTCCACAAATTCATCTAATCCAATCGATTCTCTGATC
GGATATAACTCCGATGTGTTACAACGAGGCATCGAGCTCAAGAGACTTGT
TCAAAATAGGCATAGTCACGGATTATGGAGCAACGTGCATGTGATCGAAA
CTTGGCTGCATACCGTTTCTGACACAGAAAACGGCGTCAAAGACTTTCTC
TCATCATTGGGACTTAAGATTGATCTGCACAGACTGGCTCAACTCAGGAC
GTTGGATATGAATGCCAGAGATGTCAAGAAGGACAAATTCGTCACCACAG
CTACCATTGACGACGTGGATGCACGAATCGCTTATATGCTCAACAAGTTA
CCTTTGCCACGACAAGCTCTACAACGCCCCGTGTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:113665..114750-

>Ggra1326.t1 ID=Ggra1326.t1|Name=Ggra1326.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000092_pilon:113665..114750- (Gracilaria gracilis GNS1m male)
ATGCCCGCACCACTCGACCGAATCGGCGCCAAGCGAACGCTGCTCATACT
GTGGCGGTCTTGGCAGCGTCTCGTGCAGAAGGGTGTGCCATACAACAACC
GTCGCATCTCCCTCTCCCGCATCCTCGCAACATGGGCGCTCGTACTCTTC
TCTGTGCGCGTTATCAACATCTTGCTCCGTATAGCAAGCCCAGAACGCAC
CGCACTTTCGTATAGAACCAGGGCTTCGTTCGCTGTTGACACGCAGTTCT
GGCATGGTAGACACCTCATTTTCTGCGTTTCCCCTGGACGATCGGGGTCA
AAGTATCTGCGAAACGTTCTTGACGTCGCGCAGAATGTCATTTCCAGACA
TGAACCGGAGCCTAAGATGACTGGCACCTATCTGCAACGCGTCGTTCTAC
AGGGTATGAGAAAAGAAACGTTTGAAGAACGAGCCAAGCTAAAGCTGGCC
GCCATTCGACAGGCTTTAGAAGCAACTTCCCCGGATGTTACGTACGCGGA
AACGAGTCATATGTTTGTCAAGACGTTTGCAGATGTTGTTTTGCATCACT
TAGCAGACAGCGCCAACATCTCCATCGTTATTCTACACCGACCTGCGAGA
GATTCAATATGGAGTCAGCTTCGCTTAGGATGGTTTTCGCCGGGTCACTC
CGGGAAGAATGTGTGGTATTACGATATCAACGATGTTCACGAGAAAGAAC
GACATGTCTCATTCTCCACAAATTCATCTAATCCAATCGATTCTCTGATC
GGATATAACTCCGATGTGTTACAACGAGGCATCGAGCTCAAGAGACTTGT
TCAAAATAGGCATAGTCACGGATTATGGAGCAACGTGCATGTGATCGAAA
CTTGGCTGCATACCGTTTCTGACACAGAAAACGGCGTCAAAGACTTTCTC
TCATCATTGGGACTTAAGATTGATCTGCACAGACTGGCTCAACTCAGGAC
GTTGGATATGAATGCCAGAGATGTCAAGAAGGACAAATTCGTCACCACAG
CTACCATTGACGACGTGGATGCACGAATCGCTTATATGCTCAACAAGTTA
CCTTTGCCACGACAAGCTCTACAACGCCCCGTGTAA
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