Ggra1325.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1325.t1
Unique NameGgra1325.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:112303..113535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI2G50500.1
PFAMsAminotran_1_2
Max annot lvl35493|Streptophyta
KEGG rclassRC00006
KEGG koko:K14454
KEGG ReactionR00355,R00694,R00734,R00896,R02433,R02619,R05052
KEGG Pathwayko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00710,ko00950,ko00960,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00710,map00950,map00960,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00170,M00171
GOsGO:0003674,GO:0003824,GO:0004069,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006103,GO:0006520,GO:0006522,GO:0006531,GO:0006536,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008483,GO:0009060,GO:0009064,GO:0009066,GO:0009078,GO:0009506,GO:0009536,GO:0009987,GO:0010150,GO:0015980,GO:0016020,GO:0016740,GO:0016769,GO:0016999,GO:0017144,GO:0019752,GO:0030054,GO:0030312,GO:0031090,GO:0032501,GO:0032502,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0051186,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0090693,GO:0098588,GO:0098805,GO:0099402,GO:1901564,GO:1901605
Evalue9.01e-164
EggNOG OGsCOG1448@1|root,KOG1411@2759|Eukaryota,37P2V@33090|Viridiplantae,3G8KV@35493|Streptophyta,3KSGB@4447|Liliopsida,3ID4F@38820|Poales
EC2.6.1.1
DescriptionAspartate aminotransferase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1325Ggra1325Gracilaria gracilis GNS1m malegenetig00000092_pilon 112303..113535 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1325.t1.start1Ggra1325.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 112303..112305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1325.t1.CDS1Ggra1325.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 112303..113535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1325.t1.exon1Ggra1325.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 112303..113535 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1325.t1.stop1Ggra1325.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 113533..113535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1325.t1Ggra1325.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 112303..113535 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1325.t1 ID=Ggra1325.t1|Name=Ggra1325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp
MPSSIFDQVPEAPPDPILSITAAYRADPSPKKVNLGVGAYRTDDGAPYVL
PIVKKFEQQFAEDASTTHEYLPQDGLTNFNYHSARLILGHDSSALEQGRV
VTVQALSGTGALRIGFTFIANFIGKRFVYIPNPTWSNHRNVVPQSGLPPT
KSYRYFDPNTRAVDIEGLLEDLSTAIEGSIVVFHGCAHNPTGADPSKPDW
SRILEVVKSKKLVPFFDNAYQGFASGNLDTDAWSTRLFVESGIDMFVAQS
YAKNMGMYGERVGALNVVLSSPESVNAVKSQLKQLIRAMYSNPPLHGARI
AAAIMSDKEAFREWEIELEKMSARIQTMRVRLRDALNKNKAPGNWDHIVN
QIGMFSFTGLTSQQVAFMRDRYHIYMTSNGRVSMAGLTEGTVDYVADAIK
DAVESVVKQD*
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spliced messenger RNA

>Ggra1325.t1 ID=Ggra1325.t1|Name=Ggra1325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000092_pilon:112303..113535+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCTCCATCTTCGACCAAGTACCAGAGGCTCCACCGGATCCGAT
CCTGTCCATAACCGCCGCGTACCGAGCGGACCCCTCCCCAAAGAAGGTAA
ACCTTGGAGTAGGTGCATACCGTACGGATGATGGCGCACCTTACGTGCTT
CCGATTGTCAAGAAGTTTGAACAGCAGTTTGCAGAAGATGCTTCCACAAC
TCATGAGTACCTACCACAGGACGGGTTGACGAATTTCAACTATCATTCCG
CACGGCTTATTCTCGGTCATGATAGCAGCGCTCTAGAACAGGGTCGCGTC
GTCACCGTACAGGCTCTTTCAGGAACCGGTGCGCTTCGGATCGGCTTCAC
ATTCATAGCCAACTTCATCGGAAAACGCTTTGTGTATATCCCCAACCCGA
CATGGTCAAATCACCGCAACGTAGTCCCACAATCTGGATTACCGCCAACC
AAAAGCTATCGCTACTTTGATCCCAACACTCGTGCCGTCGATATCGAAGG
CCTATTGGAAGATTTGAGCACTGCAATCGAAGGATCCATTGTCGTTTTCC
ATGGATGTGCTCACAACCCCACGGGTGCAGACCCTTCCAAGCCCGATTGG
TCCCGCATTCTTGAAGTTGTCAAATCAAAGAAACTCGTTCCATTCTTTGA
TAACGCGTATCAGGGGTTTGCTTCTGGGAATTTGGACACTGATGCGTGGT
CTACTAGATTGTTTGTGGAATCTGGGATTGATATGTTCGTCGCTCAATCG
TACGCGAAGAACATGGGAATGTACGGCGAGCGCGTTGGAGCACTCAACGT
TGTGTTGTCATCACCAGAGTCGGTTAATGCAGTCAAGAGTCAGTTGAAAC
AGCTTATCCGGGCCATGTACAGCAATCCTCCGTTGCATGGAGCCCGTATC
GCCGCTGCGATAATGTCTGACAAAGAGGCCTTCCGAGAATGGGAAATAGA
GCTAGAGAAGATGTCGGCACGCATTCAGACCATGAGGGTCCGATTGAGAG
ACGCCTTGAATAAGAATAAGGCACCTGGGAACTGGGATCATATCGTGAAT
CAGATTGGTATGTTCAGCTTTACAGGGTTGACGAGTCAGCAAGTTGCGTT
CATGAGAGATAGATATCATATCTACATGACCAGTAACGGACGAGTGTCGA
TGGCAGGTCTGACAGAAGGCACGGTTGACTACGTTGCCGATGCGATCAAG
GATGCTGTCGAGAGCGTTGTCAAGCAGGACTGA
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protein sequence of Ggra1325.t1

>Ggra1325.t1 ID=Ggra1325.t1|Name=Ggra1325.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=411bp
MPSSIFDQVPEAPPDPILSITAAYRADPSPKKVNLGVGAYRTDDGAPYVL
PIVKKFEQQFAEDASTTHEYLPQDGLTNFNYHSARLILGHDSSALEQGRV
VTVQALSGTGALRIGFTFIANFIGKRFVYIPNPTWSNHRNVVPQSGLPPT
KSYRYFDPNTRAVDIEGLLEDLSTAIEGSIVVFHGCAHNPTGADPSKPDW
SRILEVVKSKKLVPFFDNAYQGFASGNLDTDAWSTRLFVESGIDMFVAQS
YAKNMGMYGERVGALNVVLSSPESVNAVKSQLKQLIRAMYSNPPLHGARI
AAAIMSDKEAFREWEIELEKMSARIQTMRVRLRDALNKNKAPGNWDHIVN
QIGMFSFTGLTSQQVAFMRDRYHIYMTSNGRVSMAGLTEGTVDYVADAIK
DAVESVVKQD*
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mRNA from alignment at tig00000092_pilon:112303..113535+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1325.t1 ID=Ggra1325.t1|Name=Ggra1325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000092_pilon:112303..113535+ (Gracilaria gracilis GNS1m male)
ATGCCCAGCTCCATCTTCGACCAAGTACCAGAGGCTCCACCGGATCCGAT
CCTGTCCATAACCGCCGCGTACCGAGCGGACCCCTCCCCAAAGAAGGTAA
ACCTTGGAGTAGGTGCATACCGTACGGATGATGGCGCACCTTACGTGCTT
CCGATTGTCAAGAAGTTTGAACAGCAGTTTGCAGAAGATGCTTCCACAAC
TCATGAGTACCTACCACAGGACGGGTTGACGAATTTCAACTATCATTCCG
CACGGCTTATTCTCGGTCATGATAGCAGCGCTCTAGAACAGGGTCGCGTC
GTCACCGTACAGGCTCTTTCAGGAACCGGTGCGCTTCGGATCGGCTTCAC
ATTCATAGCCAACTTCATCGGAAAACGCTTTGTGTATATCCCCAACCCGA
CATGGTCAAATCACCGCAACGTAGTCCCACAATCTGGATTACCGCCAACC
AAAAGCTATCGCTACTTTGATCCCAACACTCGTGCCGTCGATATCGAAGG
CCTATTGGAAGATTTGAGCACTGCAATCGAAGGATCCATTGTCGTTTTCC
ATGGATGTGCTCACAACCCCACGGGTGCAGACCCTTCCAAGCCCGATTGG
TCCCGCATTCTTGAAGTTGTCAAATCAAAGAAACTCGTTCCATTCTTTGA
TAACGCGTATCAGGGGTTTGCTTCTGGGAATTTGGACACTGATGCGTGGT
CTACTAGATTGTTTGTGGAATCTGGGATTGATATGTTCGTCGCTCAATCG
TACGCGAAGAACATGGGAATGTACGGCGAGCGCGTTGGAGCACTCAACGT
TGTGTTGTCATCACCAGAGTCGGTTAATGCAGTCAAGAGTCAGTTGAAAC
AGCTTATCCGGGCCATGTACAGCAATCCTCCGTTGCATGGAGCCCGTATC
GCCGCTGCGATAATGTCTGACAAAGAGGCCTTCCGAGAATGGGAAATAGA
GCTAGAGAAGATGTCGGCACGCATTCAGACCATGAGGGTCCGATTGAGAG
ACGCCTTGAATAAGAATAAGGCACCTGGGAACTGGGATCATATCGTGAAT
CAGATTGGTATGTTCAGCTTTACAGGGTTGACGAGTCAGCAAGTTGCGTT
CATGAGAGATAGATATCATATCTACATGACCAGTAACGGACGAGTGTCGA
TGGCAGGTCTGACAGAAGGCACGGTTGACTACGTTGCCGATGCGATCAAG
GATGCTGTCGAGAGCGTTGTCAAGCAGGACTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:112303..113535+

>Ggra1325.t1 ID=Ggra1325.t1|Name=Ggra1325.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1233bp|location=Sequence derived from alignment at tig00000092_pilon:112303..113535+ (Gracilaria gracilis GNS1m male)
ATGCCCAGCTCCATCTTCGACCAAGTACCAGAGGCTCCACCGGATCCGAT
CCTGTCCATAACCGCCGCGTACCGAGCGGACCCCTCCCCAAAGAAGGTAA
ACCTTGGAGTAGGTGCATACCGTACGGATGATGGCGCACCTTACGTGCTT
CCGATTGTCAAGAAGTTTGAACAGCAGTTTGCAGAAGATGCTTCCACAAC
TCATGAGTACCTACCACAGGACGGGTTGACGAATTTCAACTATCATTCCG
CACGGCTTATTCTCGGTCATGATAGCAGCGCTCTAGAACAGGGTCGCGTC
GTCACCGTACAGGCTCTTTCAGGAACCGGTGCGCTTCGGATCGGCTTCAC
ATTCATAGCCAACTTCATCGGAAAACGCTTTGTGTATATCCCCAACCCGA
CATGGTCAAATCACCGCAACGTAGTCCCACAATCTGGATTACCGCCAACC
AAAAGCTATCGCTACTTTGATCCCAACACTCGTGCCGTCGATATCGAAGG
CCTATTGGAAGATTTGAGCACTGCAATCGAAGGATCCATTGTCGTTTTCC
ATGGATGTGCTCACAACCCCACGGGTGCAGACCCTTCCAAGCCCGATTGG
TCCCGCATTCTTGAAGTTGTCAAATCAAAGAAACTCGTTCCATTCTTTGA
TAACGCGTATCAGGGGTTTGCTTCTGGGAATTTGGACACTGATGCGTGGT
CTACTAGATTGTTTGTGGAATCTGGGATTGATATGTTCGTCGCTCAATCG
TACGCGAAGAACATGGGAATGTACGGCGAGCGCGTTGGAGCACTCAACGT
TGTGTTGTCATCACCAGAGTCGGTTAATGCAGTCAAGAGTCAGTTGAAAC
AGCTTATCCGGGCCATGTACAGCAATCCTCCGTTGCATGGAGCCCGTATC
GCCGCTGCGATAATGTCTGACAAAGAGGCCTTCCGAGAATGGGAAATAGA
GCTAGAGAAGATGTCGGCACGCATTCAGACCATGAGGGTCCGATTGAGAG
ACGCCTTGAATAAGAATAAGGCACCTGGGAACTGGGATCATATCGTGAAT
CAGATTGGTATGTTCAGCTTTACAGGGTTGACGAGTCAGCAAGTTGCGTT
CATGAGAGATAGATATCATATCTACATGACCAGTAACGGACGAGTGTCGA
TGGCAGGTCTGACAGAAGGCACGGTTGACTACGTTGCCGATGCGATCAAG
GATGCTGTCGAGAGCGTTGTCAAGCAGGACTGA
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