Ggra1324.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1324.t1
Unique Name	Ggra1324.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:109543..111612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMF066CT
PFAMs	GIDA,GIDA_assoc
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00053,RC00209,RC00870
KEGG ko	ko:K03495
KEGG Reaction	R08701
GOs	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363
Evalue	3.73e-287
EggNOG OGs	COG0445@1\|root,KOG2311@2759\|Eukaryota
Description	mitochondrial tRNA wobble uridine modification
COG category	D
BRITE	ko00000,ko03016,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1324	Ggra1324	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 109543..111612 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1324.t1.start1	Ggra1324.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 109543..109545 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1324.t1.CDS1	Ggra1324.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 109543..111612 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1324.t1.exon1	Ggra1324.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 109543..111612 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1324.t1.stop1	Ggra1324.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 111610..111612 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1324.t1	Ggra1324.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 109543..111612 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:109543..111612+
coding sequence from alignment at tig00000092_pilon:109543..111612+

mRNA sequence

>Ggra1324.t1 ID=Ggra1324.t1|Name=Ggra1324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp
MTSFISPLPLPIGPRHISPISRQGPRSTSPRKRKHPPSALLRESQRVINW
HPTAYDVIVIGAGHSGCEAALAASNLSAKTLLLTMNLDKIAWQPCNPAVG
GPAKSTLVHETDALGGWIGRIADRTYLQRRILNRSKGPAVWALRAQTDKR
EYSQMMTDVLYQRSLTPFLDIREGMVHDLVMGDNDDVFGVTTFFGAAFRT
KSVVITTGTFLQGTIWVGARSMPAGRAGELPALGLTQTLADLGFETGRLK
TGTPPRVDSRSVNYSVMEPQPSDEHDHWFSFDPSEWNPRETMPCYLTRTS
PLTHRMIQENIHLTPKYGGFMESTGPRYCPSIEDKIVRFSDKLSHQIFIE
PEGRTIPELYIQGFSTGLPEDIQLEVLRTIPGLENATMVRPAYSVDYDYI
PATQLHTTLMSKHVDGLYFAGQVCGTTGYEEAASQGLIAGINAARRALGL
DMISLSRESSFIGTMIDDLCTKPLREPYRVLTSRSEYRLILRADNADSRM
TPLGRSIGMIDDHRWKIFEEKSKRIDQEMKRLYRTRISGSSEDAEQLRKH
GASIKQSFTLAAVLKQPALNYTRLQQAGLGGQLQNAYERERVETEVKYEG
YIKRQFDEIEKTKKAFSKRLPDIDYASVNGLRLEAREKLAKIRPETIGQA
ARIGGVNPADIAVLNVFVEKMRAQNARNGSEVKVRTARD*

spliced messenger RNA

>Ggra1324.t1 ID=Ggra1324.t1|Name=Ggra1324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00000092_pilon:109543..111612+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCCTTCATCTCGCCCCTCCCCCTTCCCATAGGCCCACGCCACAT
CTCTCCCATCTCCAGACAGGGTCCCCGCTCAACTTCGCCGCGCAAACGAA
AGCACCCCCCGAGCGCGCTGCTTCGCGAGTCGCAGCGTGTGATAAACTGG
CATCCAACAGCTTATGATGTAATCGTCATAGGCGCCGGACATTCCGGCTG
CGAAGCTGCTCTGGCCGCTTCAAATCTCTCTGCAAAGACACTTTTATTAA
CCATGAACCTCGACAAGATTGCTTGGCAGCCATGTAATCCTGCTGTGGGA
GGCCCTGCAAAGTCTACCTTGGTGCATGAGACCGATGCGTTGGGCGGCTG
GATTGGACGTATTGCCGATAGAACGTACCTGCAACGGCGAATATTGAATC
GTTCAAAGGGTCCTGCAGTGTGGGCTTTGCGCGCACAGACGGATAAGAGA
GAGTACTCTCAGATGATGACCGATGTGTTGTATCAACGTTCGCTGACTCC
GTTTCTAGATATCAGAGAAGGTATGGTACATGATCTAGTCATGGGTGACA
ATGATGACGTTTTTGGGGTCACTACCTTCTTCGGGGCTGCCTTTCGAACA
AAGAGTGTCGTCATCACCACGGGAACGTTCTTGCAAGGCACCATTTGGGT
AGGCGCGCGCAGCATGCCGGCAGGCCGAGCGGGAGAACTTCCGGCTCTTG
GACTCACACAGACATTGGCGGACTTGGGCTTTGAGACCGGGCGATTGAAG
ACTGGAACCCCACCTCGCGTCGACTCTAGGTCTGTCAACTACTCTGTAAT
GGAGCCACAACCGTCTGACGAACATGATCATTGGTTCAGCTTCGATCCAT
CCGAATGGAATCCGCGTGAAACTATGCCCTGTTATCTCACTCGAACATCA
CCTCTCACTCATCGAATGATACAAGAAAACATACACCTCACGCCCAAGTA
CGGCGGCTTCATGGAATCAACTGGACCACGGTACTGTCCTAGCATCGAGG
ATAAGATTGTTCGCTTCTCTGACAAGCTTTCGCATCAGATCTTCATTGAA
CCTGAAGGTCGAACTATTCCAGAACTCTATATACAGGGCTTTAGCACTGG
CCTTCCTGAAGATATTCAACTTGAGGTCCTGCGCACAATTCCGGGATTGG
AAAATGCGACGATGGTGCGCCCCGCGTATAGTGTTGACTACGACTATATC
CCAGCCACCCAGTTGCACACTACTTTGATGAGCAAGCACGTTGATGGGTT
GTATTTTGCGGGACAGGTGTGTGGAACCACTGGTTACGAAGAAGCTGCTT
CGCAAGGGCTTATTGCGGGTATTAACGCTGCTAGGCGAGCGTTAGGATTA
GACATGATTTCATTGTCGAGAGAAAGTTCTTTCATTGGCACCATGATTGA
TGACCTTTGCACAAAACCACTGAGAGAACCATACCGTGTACTCACATCGC
GGTCAGAGTATCGCCTAATTTTGAGAGCGGACAATGCGGATAGTCGAATG
ACGCCGTTGGGTAGATCGATTGGAATGATTGATGACCATAGATGGAAGAT
ATTCGAGGAAAAATCAAAACGAATAGACCAAGAGATGAAGCGGTTGTACC
GAACGCGTATATCTGGGAGCAGTGAGGATGCGGAGCAGCTTCGCAAGCAT
GGAGCATCGATAAAGCAAAGTTTTACTCTTGCAGCCGTGCTGAAGCAACC
GGCACTTAACTACACCCGTTTACAGCAAGCAGGGCTTGGTGGACAGCTTC
AGAATGCGTACGAAAGAGAGCGTGTGGAGACTGAAGTCAAGTATGAAGGA
TATATCAAACGACAATTTGACGAAATTGAGAAGACAAAGAAGGCATTTTC
AAAGCGACTACCCGACATTGATTATGCTTCTGTGAATGGATTGAGACTTG
AGGCCAGGGAAAAGTTGGCAAAGATTCGTCCGGAGACAATTGGACAGGCA
GCCCGTATCGGAGGAGTCAACCCGGCTGATATTGCCGTACTCAATGTTTT
TGTTGAAAAGATGAGGGCTCAGAATGCTAGAAATGGTTCTGAAGTGAAAG
TGAGGACGGCTCGAGATTGA

protein sequence of Ggra1324.t1

>Ggra1324.t1 ID=Ggra1324.t1|Name=Ggra1324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=690bp
MTSFISPLPLPIGPRHISPISRQGPRSTSPRKRKHPPSALLRESQRVINW
HPTAYDVIVIGAGHSGCEAALAASNLSAKTLLLTMNLDKIAWQPCNPAVG
GPAKSTLVHETDALGGWIGRIADRTYLQRRILNRSKGPAVWALRAQTDKR
EYSQMMTDVLYQRSLTPFLDIREGMVHDLVMGDNDDVFGVTTFFGAAFRT
KSVVITTGTFLQGTIWVGARSMPAGRAGELPALGLTQTLADLGFETGRLK
TGTPPRVDSRSVNYSVMEPQPSDEHDHWFSFDPSEWNPRETMPCYLTRTS
PLTHRMIQENIHLTPKYGGFMESTGPRYCPSIEDKIVRFSDKLSHQIFIE
PEGRTIPELYIQGFSTGLPEDIQLEVLRTIPGLENATMVRPAYSVDYDYI
PATQLHTTLMSKHVDGLYFAGQVCGTTGYEEAASQGLIAGINAARRALGL
DMISLSRESSFIGTMIDDLCTKPLREPYRVLTSRSEYRLILRADNADSRM
TPLGRSIGMIDDHRWKIFEEKSKRIDQEMKRLYRTRISGSSEDAEQLRKH
GASIKQSFTLAAVLKQPALNYTRLQQAGLGGQLQNAYERERVETEVKYEG
YIKRQFDEIEKTKKAFSKRLPDIDYASVNGLRLEAREKLAKIRPETIGQA
ARIGGVNPADIAVLNVFVEKMRAQNARNGSEVKVRTARD*

mRNA from alignment at tig00000092_pilon:109543..111612+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1324.t1 ID=Ggra1324.t1|Name=Ggra1324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00000092_pilon:109543..111612+ (Gracilaria gracilis GNS1m male)
ATGACGTCCTTCATCTCGCCCCTCCCCCTTCCCATAGGCCCACGCCACAT
CTCTCCCATCTCCAGACAGGGTCCCCGCTCAACTTCGCCGCGCAAACGAA
AGCACCCCCCGAGCGCGCTGCTTCGCGAGTCGCAGCGTGTGATAAACTGG
CATCCAACAGCTTATGATGTAATCGTCATAGGCGCCGGACATTCCGGCTG
CGAAGCTGCTCTGGCCGCTTCAAATCTCTCTGCAAAGACACTTTTATTAA
CCATGAACCTCGACAAGATTGCTTGGCAGCCATGTAATCCTGCTGTGGGA
GGCCCTGCAAAGTCTACCTTGGTGCATGAGACCGATGCGTTGGGCGGCTG
GATTGGACGTATTGCCGATAGAACGTACCTGCAACGGCGAATATTGAATC
GTTCAAAGGGTCCTGCAGTGTGGGCTTTGCGCGCACAGACGGATAAGAGA
GAGTACTCTCAGATGATGACCGATGTGTTGTATCAACGTTCGCTGACTCC
GTTTCTAGATATCAGAGAAGGTATGGTACATGATCTAGTCATGGGTGACA
ATGATGACGTTTTTGGGGTCACTACCTTCTTCGGGGCTGCCTTTCGAACA
AAGAGTGTCGTCATCACCACGGGAACGTTCTTGCAAGGCACCATTTGGGT
AGGCGCGCGCAGCATGCCGGCAGGCCGAGCGGGAGAACTTCCGGCTCTTG
GACTCACACAGACATTGGCGGACTTGGGCTTTGAGACCGGGCGATTGAAG
ACTGGAACCCCACCTCGCGTCGACTCTAGGTCTGTCAACTACTCTGTAAT
GGAGCCACAACCGTCTGACGAACATGATCATTGGTTCAGCTTCGATCCAT
CCGAATGGAATCCGCGTGAAACTATGCCCTGTTATCTCACTCGAACATCA
CCTCTCACTCATCGAATGATACAAGAAAACATACACCTCACGCCCAAGTA
CGGCGGCTTCATGGAATCAACTGGACCACGGTACTGTCCTAGCATCGAGG
ATAAGATTGTTCGCTTCTCTGACAAGCTTTCGCATCAGATCTTCATTGAA
CCTGAAGGTCGAACTATTCCAGAACTCTATATACAGGGCTTTAGCACTGG
CCTTCCTGAAGATATTCAACTTGAGGTCCTGCGCACAATTCCGGGATTGG
AAAATGCGACGATGGTGCGCCCCGCGTATAGTGTTGACTACGACTATATC
CCAGCCACCCAGTTGCACACTACTTTGATGAGCAAGCACGTTGATGGGTT
GTATTTTGCGGGACAGGTGTGTGGAACCACTGGTTACGAAGAAGCTGCTT
CGCAAGGGCTTATTGCGGGTATTAACGCTGCTAGGCGAGCGTTAGGATTA
GACATGATTTCATTGTCGAGAGAAAGTTCTTTCATTGGCACCATGATTGA
TGACCTTTGCACAAAACCACTGAGAGAACCATACCGTGTACTCACATCGC
GGTCAGAGTATCGCCTAATTTTGAGAGCGGACAATGCGGATAGTCGAATG
ACGCCGTTGGGTAGATCGATTGGAATGATTGATGACCATAGATGGAAGAT
ATTCGAGGAAAAATCAAAACGAATAGACCAAGAGATGAAGCGGTTGTACC
GAACGCGTATATCTGGGAGCAGTGAGGATGCGGAGCAGCTTCGCAAGCAT
GGAGCATCGATAAAGCAAAGTTTTACTCTTGCAGCCGTGCTGAAGCAACC
GGCACTTAACTACACCCGTTTACAGCAAGCAGGGCTTGGTGGACAGCTTC
AGAATGCGTACGAAAGAGAGCGTGTGGAGACTGAAGTCAAGTATGAAGGA
TATATCAAACGACAATTTGACGAAATTGAGAAGACAAAGAAGGCATTTTC
AAAGCGACTACCCGACATTGATTATGCTTCTGTGAATGGATTGAGACTTG
AGGCCAGGGAAAAGTTGGCAAAGATTCGTCCGGAGACAATTGGACAGGCA
GCCCGTATCGGAGGAGTCAACCCGGCTGATATTGCCGTACTCAATGTTTT
TGTTGAAAAGATGAGGGCTCAGAATGCTAGAAATGGTTCTGAAGTGAAAG
TGAGGACGGCTCGAGATTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:109543..111612+

>Ggra1324.t1 ID=Ggra1324.t1|Name=Ggra1324.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2070bp|location=Sequence derived from alignment at tig00000092_pilon:109543..111612+ (Gracilaria gracilis GNS1m male)
ATGACGTCCTTCATCTCGCCCCTCCCCCTTCCCATAGGCCCACGCCACAT
CTCTCCCATCTCCAGACAGGGTCCCCGCTCAACTTCGCCGCGCAAACGAA
AGCACCCCCCGAGCGCGCTGCTTCGCGAGTCGCAGCGTGTGATAAACTGG
CATCCAACAGCTTATGATGTAATCGTCATAGGCGCCGGACATTCCGGCTG
CGAAGCTGCTCTGGCCGCTTCAAATCTCTCTGCAAAGACACTTTTATTAA
CCATGAACCTCGACAAGATTGCTTGGCAGCCATGTAATCCTGCTGTGGGA
GGCCCTGCAAAGTCTACCTTGGTGCATGAGACCGATGCGTTGGGCGGCTG
GATTGGACGTATTGCCGATAGAACGTACCTGCAACGGCGAATATTGAATC
GTTCAAAGGGTCCTGCAGTGTGGGCTTTGCGCGCACAGACGGATAAGAGA
GAGTACTCTCAGATGATGACCGATGTGTTGTATCAACGTTCGCTGACTCC
GTTTCTAGATATCAGAGAAGGTATGGTACATGATCTAGTCATGGGTGACA
ATGATGACGTTTTTGGGGTCACTACCTTCTTCGGGGCTGCCTTTCGAACA
AAGAGTGTCGTCATCACCACGGGAACGTTCTTGCAAGGCACCATTTGGGT
AGGCGCGCGCAGCATGCCGGCAGGCCGAGCGGGAGAACTTCCGGCTCTTG
GACTCACACAGACATTGGCGGACTTGGGCTTTGAGACCGGGCGATTGAAG
ACTGGAACCCCACCTCGCGTCGACTCTAGGTCTGTCAACTACTCTGTAAT
GGAGCCACAACCGTCTGACGAACATGATCATTGGTTCAGCTTCGATCCAT
CCGAATGGAATCCGCGTGAAACTATGCCCTGTTATCTCACTCGAACATCA
CCTCTCACTCATCGAATGATACAAGAAAACATACACCTCACGCCCAAGTA
CGGCGGCTTCATGGAATCAACTGGACCACGGTACTGTCCTAGCATCGAGG
ATAAGATTGTTCGCTTCTCTGACAAGCTTTCGCATCAGATCTTCATTGAA
CCTGAAGGTCGAACTATTCCAGAACTCTATATACAGGGCTTTAGCACTGG
CCTTCCTGAAGATATTCAACTTGAGGTCCTGCGCACAATTCCGGGATTGG
AAAATGCGACGATGGTGCGCCCCGCGTATAGTGTTGACTACGACTATATC
CCAGCCACCCAGTTGCACACTACTTTGATGAGCAAGCACGTTGATGGGTT
GTATTTTGCGGGACAGGTGTGTGGAACCACTGGTTACGAAGAAGCTGCTT
CGCAAGGGCTTATTGCGGGTATTAACGCTGCTAGGCGAGCGTTAGGATTA
GACATGATTTCATTGTCGAGAGAAAGTTCTTTCATTGGCACCATGATTGA
TGACCTTTGCACAAAACCACTGAGAGAACCATACCGTGTACTCACATCGC
GGTCAGAGTATCGCCTAATTTTGAGAGCGGACAATGCGGATAGTCGAATG
ACGCCGTTGGGTAGATCGATTGGAATGATTGATGACCATAGATGGAAGAT
ATTCGAGGAAAAATCAAAACGAATAGACCAAGAGATGAAGCGGTTGTACC
GAACGCGTATATCTGGGAGCAGTGAGGATGCGGAGCAGCTTCGCAAGCAT
GGAGCATCGATAAAGCAAAGTTTTACTCTTGCAGCCGTGCTGAAGCAACC
GGCACTTAACTACACCCGTTTACAGCAAGCAGGGCTTGGTGGACAGCTTC
AGAATGCGTACGAAAGAGAGCGTGTGGAGACTGAAGTCAAGTATGAAGGA
TATATCAAACGACAATTTGACGAAATTGAGAAGACAAAGAAGGCATTTTC
AAAGCGACTACCCGACATTGATTATGCTTCTGTGAATGGATTGAGACTTG
AGGCCAGGGAAAAGTTGGCAAAGATTCGTCCGGAGACAATTGGACAGGCA
GCCCGTATCGGAGGAGTCAACCCGGCTGATATTGCCGTACTCAATGTTTT
TGTTGAAAAGATGAGGGCTCAGAATGCTAGAAATGGTTCTGAAGTGAAAG
TGAGGACGGCTCGAGATTGA