Ggra1322.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1322.t1
Unique NameGgra1322.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length809
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:101185..103878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog357808.RoseRS_4074
PFAMsGlyco_transf_4,Glycos_transf_1,Glycos_transf_2
Max annot lvl200795|Chloroflexi
Evalue1.33e-15
EggNOG OGsCOG0438@1|root,COG1215@1|root,COG0438@2|Bacteria,COG1215@2|Bacteria,2G9IT@200795|Chloroflexi
Descriptionglycosyl transferase group 1
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1322Ggra1322Gracilaria gracilis GNS1m malegenetig00000092_pilon 101185..103878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1322.t1Ggra1322.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 101185..103878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1322.t1.stop1Ggra1322.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 101185..101187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1322.t1.CDS1Ggra1322.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 101185..102787 -
Ggra1322.t1.CDS2Ggra1322.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 103055..103878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1322.t1.exon1Ggra1322.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 101185..102787 -
Ggra1322.t1.exon2Ggra1322.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 103055..103878 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1322.t1.intron1Ggra1322.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 102788..103054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1322.t1.start1Ggra1322.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 103876..103878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1322.t1 ID=Ggra1322.t1|Name=Ggra1322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=809bp
MEKAYLSLLHRSGASAIRMLSYNHHSLLKSYQLGDPLIVRREFPRNSTSE
TQAITPSPLFYSIPSYQRAVIHSYHVHSSFSQWAPLVSVLSHSSLLREAL
FTRTHKHAVLSLDLFPKSSILLPAHLHSELAFYKWSARHEESEMYRYDVF
DMSNSFETPDLSPIPFWPIDNRKQRHVMFLLPWMQMGENEKCILDVAQKA
LSLDWHITFVLTMPFWAEDSFGEMSLQHQWLDRALQLTPDTFDLLQLAPH
QHSSRLLRHLLASRRPDFVLMANSRGEERAKVRSEMRAKHGISERSTVVL
YAGRFIVEKGIDIVADIAKMAANDVDLGSRLTFLFVGSGPELGRLESLPE
RGADGSPVVIVKAPAYGLGEMRKYYAMSDIFLLPSVNEGIALVLYEAMGS
GMLAMSTDVGGQGELITKETGVLLTNYRSYSKMLNHTMKSLVDVIEHPKR
YVDVISAGTRLVRSKFTTERFGECMIRNLEGVMRRKGKQNLMSREHWEDA
GVIQKRVDDVSDHVLDGVAVERFHGLYNRERVERSIEGFMTIGIKTYVCD
KTIVGQVENLVRSIRVHYPRVRVILANDGPISLGDEEFLKEDPFTEEHVL
PADSGISYGRNHMVNATVSRYLLLLDDDYVFGYKTNLMALLHGIHKDGLD
LVGMRLTRVADDDVFIFEQVGNITSFKNRELTLCMWDENLGPAKTEDITH
PFEVDVLHNAFIASVDVVRKHGWRIDLKVHERIAFFVDAKTANLKVGYLP
SVSVYHKTEEHDTCRSKLIEAFDSKTLPYEERIRFDTKCGENFPKWIREH
VVQHELAV*
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spliced messenger RNA

>Ggra1322.t1 ID=Ggra1322.t1|Name=Ggra1322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2427bp|location=Sequence derived from alignment at tig00000092_pilon:101185..103878- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGGCATATCTCTCATTGTTACATCGCTCCGGAGCCTCTGCAAT
TCGAATGCTATCATACAATCACCACTCACTACTCAAATCATACCAACTGG
GAGATCCGCTAATCGTGCGCCGTGAATTTCCGCGCAACTCTACTTCGGAA
ACACAAGCTATTACTCCCTCACCGCTGTTCTACAGCATACCGTCGTATCA
ACGTGCGGTCATACATTCATACCACGTACACTCTTCATTTTCGCAATGGG
CGCCCTTGGTATCTGTTCTCTCACATTCGTCTTTACTGCGCGAAGCTCTT
TTCACGCGCACCCACAAACATGCGGTTCTATCACTGGATCTATTCCCCAA
GTCGTCCATTTTACTACCGGCGCATCTACACTCGGAACTGGCGTTCTACA
AGTGGTCTGCACGACACGAGGAGTCGGAAATGTACCGGTATGATGTGTTT
GACATGTCTAATTCGTTTGAGACGCCTGACTTGTCGCCTATACCGTTCTG
GCCTATTGACAATCGCAAGCAACGTCACGTAATGTTCCTGCTGCCGTGGA
TGCAAATGGGAGAAAACGAGAAATGTATCCTGGATGTTGCTCAGAAAGCG
CTTTCGCTGGACTGGCACATCACATTTGTTCTGACAATGCCGTTCTGGGC
GGAAGACTCGTTTGGGGAGATGTCGCTGCAACACCAATGGTTGGATCGTG
CACTGCAACTAACACCGGACACGTTCGACCTACTACAATTAGCTCCACAT
CAACACTCGTCGCGGTTGCTTCGCCATCTACTGGCTTCTCGTCGACCTGA
TTTTGTGTTGATGGCGAATTCACGCGGTGAGGAACGGGCGAAGGTTCGGT
CGGAGATGCGAGCGAAGCATGGGATATCGGAAAGGTCGACGGTTGTTTTG
TATGCGGGGCGATTCATCGTTGAGAAAGGTATCGATATTGTGGCGGACAT
TGCGAAAATGGCTGCGAATGATGTGGATCTTGGGTCGAGGTTAACGTTTT
TGTTTGTGGGGAGTGGGCCAGAGTTGGGGAGGTTGGAATCTCTTCCAGAG
AGGGGGGCGGACGGGAGTCCAGTGGTGATTGTGAAAGCTCCCGCGTATGG
GCTTGGGGAAATGAGGAAATACTATGCGATGTCGGATATTTTCCTGTTGC
CGTCAGTGAATGAGGGGATTGCACTGGTTTTGTATGAAGCGATGGGGTCT
GGGATGCTTGCAATGTCGACGGACGTGGGAGGGCAGGGGGAACTGATCAC
GAAGGAGACTGGTGTTCTGCTGACCAACTATCGAAGTTATTCGAAGATGC
TGAATCACACTATGAAGAGCCTGGTGGATGTTATTGAGCATCCCAAGAGG
TATGTGGATGTGATAAGTGCCGGGACTCGTCTTGTACGAAGCAAGTTCAC
AACAGAGAGGTTTGGGGAGTGTATGATCCGGAATCTGGAAGGGGTAATGC
GAAGGAAGGGGAAGCAGAACCTAATGTCACGGGAGCACTGGGAAGATGCG
GGGGTCATACAGAAGCGGGTAGATGATGTGTCGGATCACGTTTTAGACGG
AGTAGCGGTTGAACGATTCCATGGGCTTTACAATCGTGAGCGGGTGGAAC
GGTCAATAGAGGGATTCATGACGATTGGGATCAAGACATATGTGTGCGAT
AAGACGATAGTGGGTCAAGTGGAAAACCTTGTTCGCTCGATCCGTGTACA
TTATCCGAGGGTACGGGTTATCCTGGCCAATGATGGACCGATATCACTAG
GGGACGAGGAGTTTTTGAAAGAAGATCCATTCACAGAGGAACACGTCCTA
CCGGCGGACAGTGGGATATCGTATGGGCGGAATCATATGGTGAATGCAAC
GGTTTCGCGGTATTTACTTCTCTTGGATGATGATTACGTCTTCGGCTACA
AGACGAATCTGATGGCGCTTCTTCATGGTATACACAAAGATGGTCTAGAC
CTTGTAGGAATGCGTTTGACAAGAGTTGCTGATGATGACGTGTTTATTTT
TGAGCAAGTGGGAAACATCACAAGCTTCAAGAATCGGGAACTGACACTCT
GTATGTGGGACGAAAACTTGGGCCCTGCCAAAACTGAGGACATCACTCAT
CCATTTGAAGTGGATGTGTTGCATAATGCATTCATAGCGAGCGTGGATGT
CGTTCGCAAGCATGGTTGGAGAATTGATCTGAAGGTCCACGAACGTATTG
CCTTTTTTGTAGACGCAAAGACTGCCAATCTTAAGGTTGGTTATCTCCCG
AGCGTATCGGTATATCACAAGACAGAAGAACACGATACATGCCGCTCCAA
ACTAATTGAAGCCTTTGATTCCAAAACTCTGCCTTATGAAGAAAGGATCC
GCTTTGACACAAAATGTGGGGAAAACTTCCCCAAATGGATTCGGGAACAT
GTCGTACAACATGAACTGGCGGTTTAG
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protein sequence of Ggra1322.t1

>Ggra1322.t1 ID=Ggra1322.t1|Name=Ggra1322.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=809bp
MEKAYLSLLHRSGASAIRMLSYNHHSLLKSYQLGDPLIVRREFPRNSTSE
TQAITPSPLFYSIPSYQRAVIHSYHVHSSFSQWAPLVSVLSHSSLLREAL
FTRTHKHAVLSLDLFPKSSILLPAHLHSELAFYKWSARHEESEMYRYDVF
DMSNSFETPDLSPIPFWPIDNRKQRHVMFLLPWMQMGENEKCILDVAQKA
LSLDWHITFVLTMPFWAEDSFGEMSLQHQWLDRALQLTPDTFDLLQLAPH
QHSSRLLRHLLASRRPDFVLMANSRGEERAKVRSEMRAKHGISERSTVVL
YAGRFIVEKGIDIVADIAKMAANDVDLGSRLTFLFVGSGPELGRLESLPE
RGADGSPVVIVKAPAYGLGEMRKYYAMSDIFLLPSVNEGIALVLYEAMGS
GMLAMSTDVGGQGELITKETGVLLTNYRSYSKMLNHTMKSLVDVIEHPKR
YVDVISAGTRLVRSKFTTERFGECMIRNLEGVMRRKGKQNLMSREHWEDA
GVIQKRVDDVSDHVLDGVAVERFHGLYNRERVERSIEGFMTIGIKTYVCD
KTIVGQVENLVRSIRVHYPRVRVILANDGPISLGDEEFLKEDPFTEEHVL
PADSGISYGRNHMVNATVSRYLLLLDDDYVFGYKTNLMALLHGIHKDGLD
LVGMRLTRVADDDVFIFEQVGNITSFKNRELTLCMWDENLGPAKTEDITH
PFEVDVLHNAFIASVDVVRKHGWRIDLKVHERIAFFVDAKTANLKVGYLP
SVSVYHKTEEHDTCRSKLIEAFDSKTLPYEERIRFDTKCGENFPKWIREH
VVQHELAV*
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mRNA from alignment at tig00000092_pilon:101185..103878-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1322.t1 ID=Ggra1322.t1|Name=Ggra1322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2694bp|location=Sequence derived from alignment at tig00000092_pilon:101185..103878- (Gracilaria gracilis GNS1m male)
ATGGAGAAGGCATATCTCTCATTGTTACATCGCTCCGGAGCCTCTGCAAT TCGAATGCTATCATACAATCACCACTCACTACTCAAATCATACCAACTGG GAGATCCGCTAATCGTGCGCCGTGAATTTCCGCGCAACTCTACTTCGGAA ACACAAGCTATTACTCCCTCACCGCTGTTCTACAGCATACCGTCGTATCA ACGTGCGGTCATACATTCATACCACGTACACTCTTCATTTTCGCAATGGG CGCCCTTGGTATCTGTTCTCTCACATTCGTCTTTACTGCGCGAAGCTCTT TTCACGCGCACCCACAAACATGCGGTTCTATCACTGGATCTATTCCCCAA GTCGTCCATTTTACTACCGGCGCATCTACACTCGGAACTGGCGTTCTACA AGTGGTCTGCACGACACGAGGAGTCGGAAATGTACCGGTATGATGTGTTT GACATGTCTAATTCGTTTGAGACGCCTGACTTGTCGCCTATACCGTTCTG GCCTATTGACAATCGCAAGCAACGTCACGTAATGTTCCTGCTGCCGTGGA TGCAAATGGGAGAAAACGAGAAATGTATCCTGGATGTTGCTCAGAAAGCG CTTTCGCTGGACTGGCACATCACATTTGTTCTGACAATGCCGTTCTGGGC GGAAGACTCGTTTGGGGAGATGTCGCTGCAACACCAATGGTTGGATCGTG CACTGCAACTAACACCGGACACGTTCGACCTACTACAATTAGCTCCACAT CAACACTCGTCGCGGTTGCTTCGCCATCTACTGGCTTCTCGTCGACCTGA TTTTGTGTTGATGGCGAATTCACGGTGGGCGTACTCTCATGCGTCGTTGA TCAATGCAGTGGTTCCGGATGCGGTGGTGGCGGACTACAACCACATGATT CACATGAGCTGGGAGGGGGGTGGAATGCCTCGATTTGGGGCGAATCAGAC GCGGAACTTTGACATACATCTGACGGCTTCTCATGATGTGGAGAATGCGA TGCGGAAGTGGATTGCACCGGAGGTGCTGAGGAGTAATCGCCAAAAAGTA CGCACATGTTATATCGGTACGGACCCGGAACTGCTTTACAGCGGTGAGGA ACGGGCGAAGGTTCGGTCGGAGATGCGAGCGAAGCATGGGATATCGGAAA GGTCGACGGTTGTTTTGTATGCGGGGCGATTCATCGTTGAGAAAGGTATC GATATTGTGGCGGACATTGCGAAAATGGCTGCGAATGATGTGGATCTTGG GTCGAGGTTAACGTTTTTGTTTGTGGGGAGTGGGCCAGAGTTGGGGAGGT TGGAATCTCTTCCAGAGAGGGGGGCGGACGGGAGTCCAGTGGTGATTGTG AAAGCTCCCGCGTATGGGCTTGGGGAAATGAGGAAATACTATGCGATGTC GGATATTTTCCTGTTGCCGTCAGTGAATGAGGGGATTGCACTGGTTTTGT ATGAAGCGATGGGGTCTGGGATGCTTGCAATGTCGACGGACGTGGGAGGG CAGGGGGAACTGATCACGAAGGAGACTGGTGTTCTGCTGACCAACTATCG AAGTTATTCGAAGATGCTGAATCACACTATGAAGAGCCTGGTGGATGTTA TTGAGCATCCCAAGAGGTATGTGGATGTGATAAGTGCCGGGACTCGTCTT GTACGAAGCAAGTTCACAACAGAGAGGTTTGGGGAGTGTATGATCCGGAA TCTGGAAGGGGTAATGCGAAGGAAGGGGAAGCAGAACCTAATGTCACGGG AGCACTGGGAAGATGCGGGGGTCATACAGAAGCGGGTAGATGATGTGTCG GATCACGTTTTAGACGGAGTAGCGGTTGAACGATTCCATGGGCTTTACAA TCGTGAGCGGGTGGAACGGTCAATAGAGGGATTCATGACGATTGGGATCA AGACATATGTGTGCGATAAGACGATAGTGGGTCAAGTGGAAAACCTTGTT CGCTCGATCCGTGTACATTATCCGAGGGTACGGGTTATCCTGGCCAATGA TGGACCGATATCACTAGGGGACGAGGAGTTTTTGAAAGAAGATCCATTCA CAGAGGAACACGTCCTACCGGCGGACAGTGGGATATCGTATGGGCGGAAT CATATGGTGAATGCAACGGTTTCGCGGTATTTACTTCTCTTGGATGATGA TTACGTCTTCGGCTACAAGACGAATCTGATGGCGCTTCTTCATGGTATAC ACAAAGATGGTCTAGACCTTGTAGGAATGCGTTTGACAAGAGTTGCTGAT GATGACGTGTTTATTTTTGAGCAAGTGGGAAACATCACAAGCTTCAAGAA TCGGGAACTGACACTCTGTATGTGGGACGAAAACTTGGGCCCTGCCAAAA CTGAGGACATCACTCATCCATTTGAAGTGGATGTGTTGCATAATGCATTC ATAGCGAGCGTGGATGTCGTTCGCAAGCATGGTTGGAGAATTGATCTGAA GGTCCACGAACGTATTGCCTTTTTTGTAGACGCAAAGACTGCCAATCTTA AGGTTGGTTATCTCCCGAGCGTATCGGTATATCACAAGACAGAAGAACAC GATACATGCCGCTCCAAACTAATTGAAGCCTTTGATTCCAAAACTCTGCC TTATGAAGAAAGGATCCGCTTTGACACAAAATGTGGGGAAAACTTCCCCA AATGGATTCGGGAACATGTCGTACAACATGAACTGGCGGTTTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:101185..103878-

>Ggra1322.t1 ID=Ggra1322.t1|Name=Ggra1322.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2427bp|location=Sequence derived from alignment at tig00000092_pilon:101185..103878- (Gracilaria gracilis GNS1m male)
ATGGAGAAGGCATATCTCTCATTGTTACATCGCTCCGGAGCCTCTGCAAT
TCGAATGCTATCATACAATCACCACTCACTACTCAAATCATACCAACTGG
GAGATCCGCTAATCGTGCGCCGTGAATTTCCGCGCAACTCTACTTCGGAA
ACACAAGCTATTACTCCCTCACCGCTGTTCTACAGCATACCGTCGTATCA
ACGTGCGGTCATACATTCATACCACGTACACTCTTCATTTTCGCAATGGG
CGCCCTTGGTATCTGTTCTCTCACATTCGTCTTTACTGCGCGAAGCTCTT
TTCACGCGCACCCACAAACATGCGGTTCTATCACTGGATCTATTCCCCAA
GTCGTCCATTTTACTACCGGCGCATCTACACTCGGAACTGGCGTTCTACA
AGTGGTCTGCACGACACGAGGAGTCGGAAATGTACCGGTATGATGTGTTT
GACATGTCTAATTCGTTTGAGACGCCTGACTTGTCGCCTATACCGTTCTG
GCCTATTGACAATCGCAAGCAACGTCACGTAATGTTCCTGCTGCCGTGGA
TGCAAATGGGAGAAAACGAGAAATGTATCCTGGATGTTGCTCAGAAAGCG
CTTTCGCTGGACTGGCACATCACATTTGTTCTGACAATGCCGTTCTGGGC
GGAAGACTCGTTTGGGGAGATGTCGCTGCAACACCAATGGTTGGATCGTG
CACTGCAACTAACACCGGACACGTTCGACCTACTACAATTAGCTCCACAT
CAACACTCGTCGCGGTTGCTTCGCCATCTACTGGCTTCTCGTCGACCTGA
TTTTGTGTTGATGGCGAATTCACGCGGTGAGGAACGGGCGAAGGTTCGGT
CGGAGATGCGAGCGAAGCATGGGATATCGGAAAGGTCGACGGTTGTTTTG
TATGCGGGGCGATTCATCGTTGAGAAAGGTATCGATATTGTGGCGGACAT
TGCGAAAATGGCTGCGAATGATGTGGATCTTGGGTCGAGGTTAACGTTTT
TGTTTGTGGGGAGTGGGCCAGAGTTGGGGAGGTTGGAATCTCTTCCAGAG
AGGGGGGCGGACGGGAGTCCAGTGGTGATTGTGAAAGCTCCCGCGTATGG
GCTTGGGGAAATGAGGAAATACTATGCGATGTCGGATATTTTCCTGTTGC
CGTCAGTGAATGAGGGGATTGCACTGGTTTTGTATGAAGCGATGGGGTCT
GGGATGCTTGCAATGTCGACGGACGTGGGAGGGCAGGGGGAACTGATCAC
GAAGGAGACTGGTGTTCTGCTGACCAACTATCGAAGTTATTCGAAGATGC
TGAATCACACTATGAAGAGCCTGGTGGATGTTATTGAGCATCCCAAGAGG
TATGTGGATGTGATAAGTGCCGGGACTCGTCTTGTACGAAGCAAGTTCAC
AACAGAGAGGTTTGGGGAGTGTATGATCCGGAATCTGGAAGGGGTAATGC
GAAGGAAGGGGAAGCAGAACCTAATGTCACGGGAGCACTGGGAAGATGCG
GGGGTCATACAGAAGCGGGTAGATGATGTGTCGGATCACGTTTTAGACGG
AGTAGCGGTTGAACGATTCCATGGGCTTTACAATCGTGAGCGGGTGGAAC
GGTCAATAGAGGGATTCATGACGATTGGGATCAAGACATATGTGTGCGAT
AAGACGATAGTGGGTCAAGTGGAAAACCTTGTTCGCTCGATCCGTGTACA
TTATCCGAGGGTACGGGTTATCCTGGCCAATGATGGACCGATATCACTAG
GGGACGAGGAGTTTTTGAAAGAAGATCCATTCACAGAGGAACACGTCCTA
CCGGCGGACAGTGGGATATCGTATGGGCGGAATCATATGGTGAATGCAAC
GGTTTCGCGGTATTTACTTCTCTTGGATGATGATTACGTCTTCGGCTACA
AGACGAATCTGATGGCGCTTCTTCATGGTATACACAAAGATGGTCTAGAC
CTTGTAGGAATGCGTTTGACAAGAGTTGCTGATGATGACGTGTTTATTTT
TGAGCAAGTGGGAAACATCACAAGCTTCAAGAATCGGGAACTGACACTCT
GTATGTGGGACGAAAACTTGGGCCCTGCCAAAACTGAGGACATCACTCAT
CCATTTGAAGTGGATGTGTTGCATAATGCATTCATAGCGAGCGTGGATGT
CGTTCGCAAGCATGGTTGGAGAATTGATCTGAAGGTCCACGAACGTATTG
CCTTTTTTGTAGACGCAAAGACTGCCAATCTTAAGGTTGGTTATCTCCCG
AGCGTATCGGTATATCACAAGACAGAAGAACACGATACATGCCGCTCCAA
ACTAATTGAAGCCTTTGATTCCAAAACTCTGCCTTATGAAGAAAGGATCC
GCTTTGACACAAAATGTGGGGAAAACTTCCCCAAATGGATTCGGGAACAT
GTCGTACAACATGAACTGGCGGTTTAG
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