Ggra1319.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1319.t1
Unique NameGgra1319.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:97932..98216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog160860.XP_007343875.1
Preferred nameRPL43
PFAMsRibosomal_L37ae
Max annot lvl4751|Fungi
KEGG koko:K02921
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue9.62e-46
EggNOG OGsCOG1997@1|root,KOG0402@2759|Eukaryota,3A5SK@33154|Opisthokonta,3P404@4751|Fungi,3V1BE@5204|Basidiomycota,229T2@155619|Agaricomycetes,3H5DY@355688|Agaricomycetes incertae sedis
Description60S ribosomal protein L37
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1319Ggra1319Gracilaria gracilis GNS1m malegenetig00000092_pilon 97932..98216 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1319.t1.stop1Ggra1319.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 97932..97934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1319.t1.CDS1Ggra1319.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 97932..98216 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1319.t1.exon1Ggra1319.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 97932..98216 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1319.t1.start1Ggra1319.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 98214..98216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1319.t1Ggra1319.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 97932..98216 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1319.t1 ID=Ggra1319.t1|Name=Ggra1319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=95bp
MGKRTRKVGVVGKYGTRYGSSLRKQVKKMEIAQHARYTCPFCGKNSVKRT
AVGIWKCGAKTCNKIIAGGAWSVNTQAATSVRSTIRRLRETVEL*
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spliced messenger RNA

>Ggra1319.t1 ID=Ggra1319.t1|Name=Ggra1319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp|location=Sequence derived from alignment at tig00000092_pilon:97932..98216- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGCGCACAAGAAAGGTCGGCGTCGTCGGAAAGTACGGCACGCG
ATATGGATCTTCGCTCCGTAAGCAGGTGAAGAAGATGGAAATCGCCCAAC
ACGCCCGCTACACGTGCCCGTTCTGCGGCAAGAACTCCGTCAAGCGAACC
GCCGTTGGCATCTGGAAGTGCGGTGCTAAGACTTGCAACAAGATCATCGC
AGGTGGCGCGTGGTCCGTCAATACGCAGGCTGCTACCTCCGTGCGAAGCA
CCATCCGTCGTTTGAGAGAAACTGTCGAACTGTGA
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protein sequence of Ggra1319.t1

>Ggra1319.t1 ID=Ggra1319.t1|Name=Ggra1319.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=95bp
MGKRTRKVGVVGKYGTRYGSSLRKQVKKMEIAQHARYTCPFCGKNSVKRT
AVGIWKCGAKTCNKIIAGGAWSVNTQAATSVRSTIRRLRETVEL*
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mRNA from alignment at tig00000092_pilon:97932..98216-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1319.t1 ID=Ggra1319.t1|Name=Ggra1319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp|location=Sequence derived from alignment at tig00000092_pilon:97932..98216- (Gracilaria gracilis GNS1m male)
ATGGGAAAGCGCACAAGAAAGGTCGGCGTCGTCGGAAAGTACGGCACGCG
ATATGGATCTTCGCTCCGTAAGCAGGTGAAGAAGATGGAAATCGCCCAAC
ACGCCCGCTACACGTGCCCGTTCTGCGGCAAGAACTCCGTCAAGCGAACC
GCCGTTGGCATCTGGAAGTGCGGTGCTAAGACTTGCAACAAGATCATCGC
AGGTGGCGCGTGGTCCGTCAATACGCAGGCTGCTACCTCCGTGCGAAGCA
CCATCCGTCGTTTGAGAGAAACTGTCGAACTGTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:97932..98216-

>Ggra1319.t1 ID=Ggra1319.t1|Name=Ggra1319.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=285bp|location=Sequence derived from alignment at tig00000092_pilon:97932..98216- (Gracilaria gracilis GNS1m male)
ATGGGAAAGCGCACAAGAAAGGTCGGCGTCGTCGGAAAGTACGGCACGCG
ATATGGATCTTCGCTCCGTAAGCAGGTGAAGAAGATGGAAATCGCCCAAC
ACGCCCGCTACACGTGCCCGTTCTGCGGCAAGAACTCCGTCAAGCGAACC
GCCGTTGGCATCTGGAAGTGCGGTGCTAAGACTTGCAACAAGATCATCGC
AGGTGGCGCGTGGTCCGTCAATACGCAGGCTGCTACCTCCGTGCGAAGCA
CCATCCGTCGTTTGAGAGAAACTGTCGAACTGTGA
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