Ggra1318.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1318.t1
Unique NameGgra1318.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:96976..97522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1318Ggra1318Gracilaria gracilis GNS1m malegenetig00000092_pilon 96976..97522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1318.t1Ggra1318.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 96976..97522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1318.t1.start1Ggra1318.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 96976..96978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1318.t1.CDS1Ggra1318.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 96976..97093 +
Ggra1318.t1.CDS2Ggra1318.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 97203..97404 +
Ggra1318.t1.CDS3Ggra1318.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000092_pilon 97507..97522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1318.t1.exon1Ggra1318.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 96976..97093 +
Ggra1318.t1.exon2Ggra1318.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 97203..97404 +
Ggra1318.t1.exon3Ggra1318.t1.exon3Gracilaria gracilis GNS1m maleexontig00000092_pilon 97507..97522 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1318.t1.intron1Ggra1318.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 97094..97202 +
Ggra1318.t1.intron2Ggra1318.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000092_pilon 97405..97506 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1318.t1.stop1Ggra1318.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 97520..97522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1318.t1 ID=Ggra1318.t1|Name=Ggra1318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=112bp
MEDSKKVTTEVHTDSAEVNKAIANLSLRVAELEKGAQMSVIASGDGTDLR
PVLLETLMDLKTLRTALITSASELDERLRELAASKEENSKLKYQVKHLKR
SLEAEESKHAE*
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spliced messenger RNA

>Ggra1318.t1 ID=Ggra1318.t1|Name=Ggra1318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00000092_pilon:96976..97522+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATAGCAAAAAAGTAACAACCGAGGTTCATACGGATTCCGCAGA
AGTGAACAAAGCAATTGCAAACCTGTCACTTCGAGTGGCCGAGCTTGAAA
AAGGAGCACAAATGTCTGTTATTGCAAGTGGTGACGGAACAGATCTACGA
CCAGTACTGCTAGAGACACTCATGGACCTCAAGACTCTACGAACTGCACT
AATAACGAGCGCGAGTGAATTAGATGAACGTCTGCGGGAACTAGCCGCAT
CCAAAGAAGAGAATTCAAAGCTGAAGTATCAGGTGAAACATCTTAAACGA
TCGTTAGAAGCTGAAGAGAGCAAACACGCAGAATAA
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protein sequence of Ggra1318.t1

>Ggra1318.t1 ID=Ggra1318.t1|Name=Ggra1318.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MEDSKKVTTEVHTDSAEVNKAIANLSLRVAELEKGAQMSVIASGDGTDLR
PVLLETLMDLKTLRTALITSASELDERLRELAASKEENSKLKYQVKHLKR
SLEAEESKHAE*
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mRNA from alignment at tig00000092_pilon:96976..97522+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1318.t1 ID=Ggra1318.t1|Name=Ggra1318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp|location=Sequence derived from alignment at tig00000092_pilon:96976..97522+ (Gracilaria gracilis GNS1m male)
ATGGAAGATAGCAAAAAAGTAACAACCGAGGTTCATACGGATTCCGCAGA
AGTGAACAAAGCAATTGCAAACCTGTCACTTCGAGTGGCCGAGCTTGAAA
AAGGAGCACAAATGTCTGGTACGTTGCATGTCTAAAGTTTCAGTTAAGAG
GAAAAAGACACCCATTAACAAAAAAGAGTCTCACTTCTGACACCTTTGAC
CGCCAATCTGTGTGTAACCTACCCAAGTTATTGCAAGTGGTGACGGAACA
GATCTACGACCAGTACTGCTAGAGACACTCATGGACCTCAAGACTCTACG
AACTGCACTAATAACGAGCGCGAGTGAATTAGATGAACGTCTGCGGGAAC
TAGCCGCATCCAAAGAAGAGAATTCAAAGCTGAAGTATCAGGTGAAACAT
CTTAAACGATCGTTAGAAGCTGAAGAGAGGTGAGTTCAAGATGATTTCGG
CCACATGCTATGCAAAGATGGTACCAGCAGAGGATCGGAATCCACTGACA
TGTGTTCGCGCGGAACTACACTTTTGCGCAGCAAACACGCAGAATAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:96976..97522+

>Ggra1318.t1 ID=Ggra1318.t1|Name=Ggra1318.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00000092_pilon:96976..97522+ (Gracilaria gracilis GNS1m male)
ATGGAAGATAGCAAAAAAGTAACAACCGAGGTTCATACGGATTCCGCAGA
AGTGAACAAAGCAATTGCAAACCTGTCACTTCGAGTGGCCGAGCTTGAAA
AAGGAGCACAAATGTCTGTTATTGCAAGTGGTGACGGAACAGATCTACGA
CCAGTACTGCTAGAGACACTCATGGACCTCAAGACTCTACGAACTGCACT
AATAACGAGCGCGAGTGAATTAGATGAACGTCTGCGGGAACTAGCCGCAT
CCAAAGAAGAGAATTCAAAGCTGAAGTATCAGGTGAAACATCTTAAACGA
TCGTTAGAAGCTGAAGAGAGCAAACACGCAGAATAA
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