Ggra1316.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1316.t1
Unique NameGgra1316.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length610
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:91368..93318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr49093
PFAMsVoltage_CLC
Max annot lvl2836|Bacillariophyta
Evalue6.95e-155
EggNOG OGsCOG0666@1|root,KOG0511@2759|Eukaryota,2XF59@2836|Bacillariophyta
DescriptionVoltage gated chloride channel
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1316Ggra1316Gracilaria gracilis GNS1m malegenetig00000092_pilon 91368..93318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1316.t1Ggra1316.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 91368..93318 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1316.t1.stop1Ggra1316.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 91368..91370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1316.t1.CDS1Ggra1316.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 91368..91529 -
Ggra1316.t1.CDS2Ggra1316.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 91651..93318 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1316.t1.exon1Ggra1316.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 91368..91529 -
Ggra1316.t1.exon2Ggra1316.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 91651..93318 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1316.t1.intron1Ggra1316.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 91530..91650 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1316.t1.start1Ggra1316.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 93316..93318 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1316.t1 ID=Ggra1316.t1|Name=Ggra1316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=610bp
MSDSDPNEVLFSDVADSPASSPAVRAVQAPPVPPTTPLPAPPQPAMSSQP
QPAAEDAATSATSLTSLPAHPLAEQQPQEHTPLINVTVTPQHVSATIPTM
MHDQPGDKPPAHSRFGLDAFKHDISDMQNGSVPVSLLIAAVIGIACGFAA
YVYYTILEFFLELLWKAMPEFLSEHLFWPECLHWIWIPIIGMSMALLVGL
SINWLGFPGDLAYTVKCVHKDGYVPVSHAPSMLVASQVSILGGGSLGPEA
PLVAICASIGGWVSMTVFKQQYKNLVRKHTLCGMACALAAFFGVPLGGSL
FALEINNRLGYEYFEHALEAIASGTICLVVFRALAQLPIGPIYFFTDVQL
DSSSAHLVVLGAVLGLIGAGLAAVFAHGHWAVVKQLKKLGWDTDPVKLSL
FGGAGIVVLGLLFPQTMFWGEFEMQTIGSLSPASKLPHIWPTSGLTGFEI
SGWFSAFLVGVAKLVAISFTVAGGYRGGFIFPFFAAGAAFGRSITFLFPS
IPPVIAVLSMAAGINVAITRTALATPLILCGLAGEGNATPPVLAASLAAV
FATYYMPFIFAQQAREDIFESQLHKYTFHNKWGEKGENPYVESTTPDAVS
DVESQAAGQ*
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spliced messenger RNA

>Ggra1316.t1 ID=Ggra1316.t1|Name=Ggra1316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1830bp|location=Sequence derived from alignment at tig00000092_pilon:91368..93318- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACAGCGATCCTAATGAAGTGCTTTTCTCCGATGTCGCAGATTC
GCCGGCCTCCTCCCCTGCTGTCCGTGCCGTTCAAGCGCCGCCTGTGCCGC
CCACTACTCCGTTGCCTGCTCCGCCACAACCCGCCATGAGCTCGCAACCG
CAACCCGCCGCCGAAGACGCTGCTACCAGCGCCACCTCCCTCACCTCACT
GCCTGCCCACCCGCTTGCGGAGCAACAACCGCAGGAGCACACCCCGCTCA
TCAACGTCACTGTCACCCCGCAGCATGTTTCGGCCACCATCCCCACCATG
ATGCACGACCAGCCGGGCGACAAGCCCCCCGCCCATTCGCGCTTCGGATT
GGACGCCTTCAAGCACGACATCTCCGACATGCAGAACGGCTCCGTGCCAG
TCAGTCTACTCATCGCCGCCGTCATTGGCATCGCCTGCGGCTTTGCTGCC
TACGTGTACTATACTATCCTCGAGTTCTTCCTCGAGCTGCTGTGGAAGGC
CATGCCCGAGTTTCTTTCGGAGCACCTCTTCTGGCCAGAGTGCCTGCACT
GGATCTGGATCCCCATCATTGGCATGAGCATGGCTTTGCTCGTCGGCCTT
TCCATCAACTGGCTTGGCTTCCCTGGAGATCTGGCCTACACCGTCAAGTG
CGTGCACAAGGACGGATACGTGCCCGTTTCACACGCCCCGTCTATGCTCG
TTGCTTCCCAAGTCTCAATCCTTGGCGGAGGTTCCTTGGGGCCTGAAGCG
CCTCTTGTGGCCATTTGCGCCTCCATTGGCGGCTGGGTGTCCATGACCGT
TTTCAAGCAACAGTACAAGAACCTCGTCAGAAAGCACACCCTGTGCGGCA
TGGCTTGCGCGCTGGCAGCCTTTTTCGGCGTGCCGCTAGGCGGCTCTCTG
TTCGCGCTTGAGATCAATAACCGCCTCGGCTACGAGTACTTTGAGCACGC
GTTGGAGGCCATTGCGTCGGGAACCATCTGTCTGGTCGTGTTCCGCGCGC
TCGCGCAGCTGCCTATTGGACCTATCTACTTTTTCACTGACGTGCAGCTT
GATTCCTCCTCAGCGCACCTTGTTGTGCTGGGTGCCGTGCTTGGACTGAT
TGGCGCTGGTTTAGCCGCCGTGTTCGCACATGGACACTGGGCTGTGGTCA
AGCAACTCAAGAAGCTCGGCTGGGATACCGACCCCGTCAAGCTCTCGCTG
TTTGGTGGTGCTGGAATTGTGGTTCTTGGACTCTTGTTCCCGCAGACCAT
GTTCTGGGGTGAATTCGAGATGCAGACCATCGGTTCCTTGTCGCCGGCCT
CCAAGCTGCCGCACATCTGGCCGACCAGCGGTCTCACAGGCTTTGAAATC
AGCGGCTGGTTCTCTGCGTTCCTCGTGGGTGTTGCTAAGCTGGTTGCGAT
TTCGTTCACCGTTGCTGGCGGATACCGCGGTGGGTTCATCTTCCCGTTCT
TTGCCGCAGGTGCTGCGTTTGGAAGATCGATCACTTTCTTGTTCCCGTCT
ATTCCGCCCGTCATCGCCGTGCTGTCCATGGCAGCTGGTATTAACGTTGC
CATCACCAGAACGGCGCTTGCGACGCCGCTGATTCTTTGCGGGCTGGCGG
GTGAGGGGAATGCGACGCCGCCCGTTCTCGCTGCGTCGTTGGCCGCGGTG
TTTGCGACATACTACATGCCATTCATCTTCGCTCAACAAGCACGTGAGGA
TATCTTTGAGTCTCAGCTTCACAAGTACACGTTCCATAACAAGTGGGGAG
AAAAGGGAGAAAACCCGTACGTGGAATCTACCACTCCGGACGCTGTGTCT
GACGTGGAGAGTCAAGCGGCCGGTCAGTAG
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protein sequence of Ggra1316.t1

>Ggra1316.t1 ID=Ggra1316.t1|Name=Ggra1316.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=610bp
MSDSDPNEVLFSDVADSPASSPAVRAVQAPPVPPTTPLPAPPQPAMSSQP
QPAAEDAATSATSLTSLPAHPLAEQQPQEHTPLINVTVTPQHVSATIPTM
MHDQPGDKPPAHSRFGLDAFKHDISDMQNGSVPVSLLIAAVIGIACGFAA
YVYYTILEFFLELLWKAMPEFLSEHLFWPECLHWIWIPIIGMSMALLVGL
SINWLGFPGDLAYTVKCVHKDGYVPVSHAPSMLVASQVSILGGGSLGPEA
PLVAICASIGGWVSMTVFKQQYKNLVRKHTLCGMACALAAFFGVPLGGSL
FALEINNRLGYEYFEHALEAIASGTICLVVFRALAQLPIGPIYFFTDVQL
DSSSAHLVVLGAVLGLIGAGLAAVFAHGHWAVVKQLKKLGWDTDPVKLSL
FGGAGIVVLGLLFPQTMFWGEFEMQTIGSLSPASKLPHIWPTSGLTGFEI
SGWFSAFLVGVAKLVAISFTVAGGYRGGFIFPFFAAGAAFGRSITFLFPS
IPPVIAVLSMAAGINVAITRTALATPLILCGLAGEGNATPPVLAASLAAV
FATYYMPFIFAQQAREDIFESQLHKYTFHNKWGEKGENPYVESTTPDAVS
DVESQAAGQ*
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mRNA from alignment at tig00000092_pilon:91368..93318-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1316.t1 ID=Ggra1316.t1|Name=Ggra1316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1951bp|location=Sequence derived from alignment at tig00000092_pilon:91368..93318- (Gracilaria gracilis GNS1m male)
ATGAGTGACAGCGATCCTAATGAAGTGCTTTTCTCCGATGTCGCAGATTC
GCCGGCCTCCTCCCCTGCTGTCCGTGCCGTTCAAGCGCCGCCTGTGCCGC
CCACTACTCCGTTGCCTGCTCCGCCACAACCCGCCATGAGCTCGCAACCG
CAACCCGCCGCCGAAGACGCTGCTACCAGCGCCACCTCCCTCACCTCACT
GCCTGCCCACCCGCTTGCGGAGCAACAACCGCAGGAGCACACCCCGCTCA
TCAACGTCACTGTCACCCCGCAGCATGTTTCGGCCACCATCCCCACCATG
ATGCACGACCAGCCGGGCGACAAGCCCCCCGCCCATTCGCGCTTCGGATT
GGACGCCTTCAAGCACGACATCTCCGACATGCAGAACGGCTCCGTGCCAG
TCAGTCTACTCATCGCCGCCGTCATTGGCATCGCCTGCGGCTTTGCTGCC
TACGTGTACTATACTATCCTCGAGTTCTTCCTCGAGCTGCTGTGGAAGGC
CATGCCCGAGTTTCTTTCGGAGCACCTCTTCTGGCCAGAGTGCCTGCACT
GGATCTGGATCCCCATCATTGGCATGAGCATGGCTTTGCTCGTCGGCCTT
TCCATCAACTGGCTTGGCTTCCCTGGAGATCTGGCCTACACCGTCAAGTG
CGTGCACAAGGACGGATACGTGCCCGTTTCACACGCCCCGTCTATGCTCG
TTGCTTCCCAAGTCTCAATCCTTGGCGGAGGTTCCTTGGGGCCTGAAGCG
CCTCTTGTGGCCATTTGCGCCTCCATTGGCGGCTGGGTGTCCATGACCGT
TTTCAAGCAACAGTACAAGAACCTCGTCAGAAAGCACACCCTGTGCGGCA
TGGCTTGCGCGCTGGCAGCCTTTTTCGGCGTGCCGCTAGGCGGCTCTCTG
TTCGCGCTTGAGATCAATAACCGCCTCGGCTACGAGTACTTTGAGCACGC
GTTGGAGGCCATTGCGTCGGGAACCATCTGTCTGGTCGTGTTCCGCGCGC
TCGCGCAGCTGCCTATTGGACCTATCTACTTTTTCACTGACGTGCAGCTT
GATTCCTCCTCAGCGCACCTTGTTGTGCTGGGTGCCGTGCTTGGACTGAT
TGGCGCTGGTTTAGCCGCCGTGTTCGCACATGGACACTGGGCTGTGGTCA
AGCAACTCAAGAAGCTCGGCTGGGATACCGACCCCGTCAAGCTCTCGCTG
TTTGGTGGTGCTGGAATTGTGGTTCTTGGACTCTTGTTCCCGCAGACCAT
GTTCTGGGGTGAATTCGAGATGCAGACCATCGGTTCCTTGTCGCCGGCCT
CCAAGCTGCCGCACATCTGGCCGACCAGCGGTCTCACAGGCTTTGAAATC
AGCGGCTGGTTCTCTGCGTTCCTCGTGGGTGTTGCTAAGCTGGTTGCGAT
TTCGTTCACCGTTGCTGGCGGATACCGCGGTGGGTTCATCTTCCCGTTCT
TTGCCGCAGGTGCTGCGTTTGGAAGATCGATCACTTTCTTGTTCCCGTCT
ATTCCGCCCGTCATCGCCGTGCTGTCCATGGCAGCTGGTATTAACGTTGC
CATCACCAGAACGGCGCTTGCGACGCCGCTGATTCTTTGCGGGCTGGCGG
GTGAGGGGAATGCGACGCCGCCCGTTCTCGCTGCGTCGTTGGCCGCGGTG
TTTGCGACATACTACATGGTACGTTTTTTTTTTGTTTTTCTGACACTGTA
CGCGTTGGCGCTGTTCTGCGCTCGCTGAGGGGCCCGATACTAATGAGTTC
TAACTTTGGTTGTTGTCTTTTTTTGTGGATGTGCTTTAGCCATTCATCTT
CGCTCAACAAGCACGTGAGGATATCTTTGAGTCTCAGCTTCACAAGTACA
CGTTCCATAACAAGTGGGGAGAAAAGGGAGAAAACCCGTACGTGGAATCT
ACCACTCCGGACGCTGTGTCTGACGTGGAGAGTCAAGCGGCCGGTCAGTA
G
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Coding sequence (CDS) from alignment at tig00000092_pilon:91368..93318-

>Ggra1316.t1 ID=Ggra1316.t1|Name=Ggra1316.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1830bp|location=Sequence derived from alignment at tig00000092_pilon:91368..93318- (Gracilaria gracilis GNS1m male)
ATGAGTGACAGCGATCCTAATGAAGTGCTTTTCTCCGATGTCGCAGATTC
GCCGGCCTCCTCCCCTGCTGTCCGTGCCGTTCAAGCGCCGCCTGTGCCGC
CCACTACTCCGTTGCCTGCTCCGCCACAACCCGCCATGAGCTCGCAACCG
CAACCCGCCGCCGAAGACGCTGCTACCAGCGCCACCTCCCTCACCTCACT
GCCTGCCCACCCGCTTGCGGAGCAACAACCGCAGGAGCACACCCCGCTCA
TCAACGTCACTGTCACCCCGCAGCATGTTTCGGCCACCATCCCCACCATG
ATGCACGACCAGCCGGGCGACAAGCCCCCCGCCCATTCGCGCTTCGGATT
GGACGCCTTCAAGCACGACATCTCCGACATGCAGAACGGCTCCGTGCCAG
TCAGTCTACTCATCGCCGCCGTCATTGGCATCGCCTGCGGCTTTGCTGCC
TACGTGTACTATACTATCCTCGAGTTCTTCCTCGAGCTGCTGTGGAAGGC
CATGCCCGAGTTTCTTTCGGAGCACCTCTTCTGGCCAGAGTGCCTGCACT
GGATCTGGATCCCCATCATTGGCATGAGCATGGCTTTGCTCGTCGGCCTT
TCCATCAACTGGCTTGGCTTCCCTGGAGATCTGGCCTACACCGTCAAGTG
CGTGCACAAGGACGGATACGTGCCCGTTTCACACGCCCCGTCTATGCTCG
TTGCTTCCCAAGTCTCAATCCTTGGCGGAGGTTCCTTGGGGCCTGAAGCG
CCTCTTGTGGCCATTTGCGCCTCCATTGGCGGCTGGGTGTCCATGACCGT
TTTCAAGCAACAGTACAAGAACCTCGTCAGAAAGCACACCCTGTGCGGCA
TGGCTTGCGCGCTGGCAGCCTTTTTCGGCGTGCCGCTAGGCGGCTCTCTG
TTCGCGCTTGAGATCAATAACCGCCTCGGCTACGAGTACTTTGAGCACGC
GTTGGAGGCCATTGCGTCGGGAACCATCTGTCTGGTCGTGTTCCGCGCGC
TCGCGCAGCTGCCTATTGGACCTATCTACTTTTTCACTGACGTGCAGCTT
GATTCCTCCTCAGCGCACCTTGTTGTGCTGGGTGCCGTGCTTGGACTGAT
TGGCGCTGGTTTAGCCGCCGTGTTCGCACATGGACACTGGGCTGTGGTCA
AGCAACTCAAGAAGCTCGGCTGGGATACCGACCCCGTCAAGCTCTCGCTG
TTTGGTGGTGCTGGAATTGTGGTTCTTGGACTCTTGTTCCCGCAGACCAT
GTTCTGGGGTGAATTCGAGATGCAGACCATCGGTTCCTTGTCGCCGGCCT
CCAAGCTGCCGCACATCTGGCCGACCAGCGGTCTCACAGGCTTTGAAATC
AGCGGCTGGTTCTCTGCGTTCCTCGTGGGTGTTGCTAAGCTGGTTGCGAT
TTCGTTCACCGTTGCTGGCGGATACCGCGGTGGGTTCATCTTCCCGTTCT
TTGCCGCAGGTGCTGCGTTTGGAAGATCGATCACTTTCTTGTTCCCGTCT
ATTCCGCCCGTCATCGCCGTGCTGTCCATGGCAGCTGGTATTAACGTTGC
CATCACCAGAACGGCGCTTGCGACGCCGCTGATTCTTTGCGGGCTGGCGG
GTGAGGGGAATGCGACGCCGCCCGTTCTCGCTGCGTCGTTGGCCGCGGTG
TTTGCGACATACTACATGCCATTCATCTTCGCTCAACAAGCACGTGAGGA
TATCTTTGAGTCTCAGCTTCACAAGTACACGTTCCATAACAAGTGGGGAG
AAAAGGGAGAAAACCCGTACGTGGAATCTACCACTCCGGACGCTGTGTCT
GACGTGGAGAGTCAAGCGGCCGGTCAGTAG
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