Ggra1314.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1314.t1
Unique NameGgra1314.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:77560..78174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog869210.Marky_1135
PFAMsDUF1949,UPF0029
Max annot lvl1297|Deinococcus-Thermus
Evalue1.02e-49
EggNOG OGsCOG1739@1|root,COG1739@2|Bacteria,1WJVU@1297|Deinococcus-Thermus
DescriptionPFAM Uncharacterised protein family UPF0029, Impact, N-terminal
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1314Ggra1314Gracilaria gracilis GNS1m malegenetig00000092_pilon 77560..78174 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1314.t1.stop1Ggra1314.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 77560..77562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1314.t1.CDS1Ggra1314.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 77560..78174 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1314.t1.exon1Ggra1314.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 77560..78174 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1314.t1.start1Ggra1314.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 78172..78174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1314.t1Ggra1314.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 77560..78174 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1314.t1 ID=Ggra1314.t1|Name=Ggra1314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MRNILHLTAPHVSEIVIKKSRFVTSASKALTIADAKAFIELVREPRASHN
CWAYRIGESTYRFSDDGEPSGTAGRPIYSAICANDIDHVVVVVTRYFGGV
KLGAGGLIRAYNRSATECLKGAPKEIATATVDLQVTVQWEHIGVVQAIAD
TYERLEAVYNESGCTISLRVALDIEKAVHAKITNVTGGSAKIERLSPERE
QPGD*
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spliced messenger RNA

>Ggra1314.t1 ID=Ggra1314.t1|Name=Ggra1314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000092_pilon:77560..78174- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAACATACTACATTTGACAGCGCCACATGTCTCCGAAATAGTCAT
CAAAAAGTCTCGTTTCGTCACTAGCGCCTCAAAAGCACTCACCATCGCTG
ACGCCAAAGCGTTTATAGAACTCGTTCGTGAACCCAGGGCTTCTCATAAC
TGCTGGGCTTATCGCATTGGAGAGTCTACATATCGCTTCAGCGACGATGG
CGAGCCCTCTGGCACTGCAGGAAGACCCATCTACTCGGCCATTTGCGCAA
ACGACATCGACCACGTTGTTGTTGTTGTCACAAGATATTTCGGAGGGGTG
AAGCTTGGAGCTGGTGGCCTGATTCGTGCTTACAATAGATCTGCAACAGA
ATGCTTGAAAGGTGCCCCAAAGGAGATAGCCACTGCCACTGTTGATCTTC
AAGTAACAGTCCAATGGGAGCACATTGGAGTTGTTCAAGCCATTGCAGAT
ACATACGAGCGCCTAGAGGCAGTCTATAACGAATCCGGATGCACCATATC
TCTACGAGTGGCTCTTGATATAGAGAAGGCTGTTCATGCGAAGATAACTA
ACGTTACAGGCGGATCAGCAAAGATTGAGCGGCTTTCTCCCGAACGAGAG
CAACCTGGGGACTAA
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protein sequence of Ggra1314.t1

>Ggra1314.t1 ID=Ggra1314.t1|Name=Ggra1314.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MRNILHLTAPHVSEIVIKKSRFVTSASKALTIADAKAFIELVREPRASHN
CWAYRIGESTYRFSDDGEPSGTAGRPIYSAICANDIDHVVVVVTRYFGGV
KLGAGGLIRAYNRSATECLKGAPKEIATATVDLQVTVQWEHIGVVQAIAD
TYERLEAVYNESGCTISLRVALDIEKAVHAKITNVTGGSAKIERLSPERE
QPGD*
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mRNA from alignment at tig00000092_pilon:77560..78174-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1314.t1 ID=Ggra1314.t1|Name=Ggra1314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000092_pilon:77560..78174- (Gracilaria gracilis GNS1m male)
ATGCGTAACATACTACATTTGACAGCGCCACATGTCTCCGAAATAGTCAT
CAAAAAGTCTCGTTTCGTCACTAGCGCCTCAAAAGCACTCACCATCGCTG
ACGCCAAAGCGTTTATAGAACTCGTTCGTGAACCCAGGGCTTCTCATAAC
TGCTGGGCTTATCGCATTGGAGAGTCTACATATCGCTTCAGCGACGATGG
CGAGCCCTCTGGCACTGCAGGAAGACCCATCTACTCGGCCATTTGCGCAA
ACGACATCGACCACGTTGTTGTTGTTGTCACAAGATATTTCGGAGGGGTG
AAGCTTGGAGCTGGTGGCCTGATTCGTGCTTACAATAGATCTGCAACAGA
ATGCTTGAAAGGTGCCCCAAAGGAGATAGCCACTGCCACTGTTGATCTTC
AAGTAACAGTCCAATGGGAGCACATTGGAGTTGTTCAAGCCATTGCAGAT
ACATACGAGCGCCTAGAGGCAGTCTATAACGAATCCGGATGCACCATATC
TCTACGAGTGGCTCTTGATATAGAGAAGGCTGTTCATGCGAAGATAACTA
ACGTTACAGGCGGATCAGCAAAGATTGAGCGGCTTTCTCCCGAACGAGAG
CAACCTGGGGACTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:77560..78174-

>Ggra1314.t1 ID=Ggra1314.t1|Name=Ggra1314.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000092_pilon:77560..78174- (Gracilaria gracilis GNS1m male)
ATGCGTAACATACTACATTTGACAGCGCCACATGTCTCCGAAATAGTCAT
CAAAAAGTCTCGTTTCGTCACTAGCGCCTCAAAAGCACTCACCATCGCTG
ACGCCAAAGCGTTTATAGAACTCGTTCGTGAACCCAGGGCTTCTCATAAC
TGCTGGGCTTATCGCATTGGAGAGTCTACATATCGCTTCAGCGACGATGG
CGAGCCCTCTGGCACTGCAGGAAGACCCATCTACTCGGCCATTTGCGCAA
ACGACATCGACCACGTTGTTGTTGTTGTCACAAGATATTTCGGAGGGGTG
AAGCTTGGAGCTGGTGGCCTGATTCGTGCTTACAATAGATCTGCAACAGA
ATGCTTGAAAGGTGCCCCAAAGGAGATAGCCACTGCCACTGTTGATCTTC
AAGTAACAGTCCAATGGGAGCACATTGGAGTTGTTCAAGCCATTGCAGAT
ACATACGAGCGCCTAGAGGCAGTCTATAACGAATCCGGATGCACCATATC
TCTACGAGTGGCTCTTGATATAGAGAAGGCTGTTCATGCGAAGATAACTA
ACGTTACAGGCGGATCAGCAAAGATTGAGCGGCTTTCTCCCGAACGAGAG
CAACCTGGGGACTAA
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