Ggra1313.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1313.t1
Unique NameGgra1313.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:74710..76191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM299CT
Preferred nameDLD
PFAMsPyr_redox_2,Pyr_redox_dim
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00022,RC00583,RC02742,RC02833,RC02834
KEGG koko:K00382,ko:K17583
KEGG ReactionR00209,R01221,R01698,R03815,R07618,R08549
KEGG Pathwayko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00036,M00307,M00532
GOsGO:0000003,GO:0000166,GO:0001505,GO:0001669,GO:0003006,GO:0003674,GO:0003824,GO:0004148,GO:0004375,GO:0004591,GO:0004738,GO:0004739,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005929,GO:0005947,GO:0005960,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006103,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006508,GO:0006520,GO:0006544,GO:0006546,GO:0006549,GO:0006550,GO:0006551,GO:0006552,GO:0006563,GO:0006564,GO:0006573,GO:0006574,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006748,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007369,GO:0007568,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009063,GO:0009069,GO:0009070,GO:0009071,GO:0009081,GO:0009083,GO:0009106,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009152,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009260,GO:0009295,GO:0009353,GO:0009653,GO:0009790,GO:0009987,GO:0012505,GO:0015980,GO:0016053,GO:0016054,GO:0016310,GO:0016491,GO:0016624,GO:0016638,GO:0016642,GO:0016651,GO:0016667,GO:0016668,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019464,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022900,GO:0022904,GO:0030062,GO:0030141,GO:0030154,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033218,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036094,GO:0036211,GO:0042133,GO:0042135,GO:0042391,GO:0042645,GO:0042737,GO:0042743,GO:0042773,GO:0042775,GO:0042995,GO:0043159,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043544,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0045333,GO:0046034,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0048037,GO:0048232,GO:0048240,GO:0048468,GO:0048469,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0050660,GO:0050662,GO:0051068,GO:0051186,GO:0051188,GO:0051287,GO:0051704,GO:0055086,GO:0055114,GO:0061732,GO:0065007,GO:0065008,GO:0070013,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0072593,GO:0090407,GO:0097159,GO:0097223,GO:0097708,GO:0098798,GO:0099503,GO:0106077,GO:0120025,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901681,GO:1902494,GO:1990204,GO:1990234
Evalue3.88e-237
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota
EC1.8.1.4
Descriptiondihydrolipoyl dehydrogenase activity
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01009,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1313Ggra1313Gracilaria gracilis GNS1m malegenetig00000092_pilon 74710..76191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1313.t1.stop1Ggra1313.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 74710..74712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1313.t1.CDS1Ggra1313.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 74710..76191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1313.t1.exon1Ggra1313.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 74710..76191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1313.t1.start1Ggra1313.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 76189..76191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1313.t1Ggra1313.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 74710..76191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1313.t1 ID=Ggra1313.t1|Name=Ggra1313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MLSFRTTAPRFHTLRRFLSTAPQQDLVVIGGGPGGYVAAIKAAQLGLSVT
CVEKRGTLGGTCLNVGCIPSKALLHSSHLYEEAKHSFSKHGIDIKGDVEV
NLPAMMKHKLNSVGGLTQGIEGLFKKNKVTYVKGAGSVSSANEVSVDLID
GGSQQIAAKNIMIATGSEVSTLPTVPIDEQVIVSSTGALKLETVPEKMVV
IGGGVIGLEMGSVWRRLGADVTVVEFLDRIIPGTDKEIANNFLRILKKQK
MKFKLGTKVVSSKKEGGKVVLDLEKSKGGKPETMEADVVLVATGRKPHTD
GLGLDKVGIEMDDRGRINVDDKFRTNVPNIYAIGDVIKGPMLAHKAEDEG
LIAAEIIAGAGEGHLDYNCVPNVIYTHPEVATVGKTEEELKEAGVEYSKG
TFPFMANSRARTNDVGGEFAQGMVKVLADKTTDRVLGMHIVGPNAGELIA
EGVLAMEYGASSEDIARTCHAHPTLSEATREAAMATHSKPIHF*
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spliced messenger RNA

>Ggra1313.t1 ID=Ggra1313.t1|Name=Ggra1313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000092_pilon:74710..76191- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCGTTTCGCACCACAGCTCCTCGCTTCCACACGCTGCGTCGCTT
CTTGTCCACCGCTCCTCAACAGGATCTTGTCGTTATTGGCGGCGGTCCCG
GTGGTTATGTAGCTGCTATCAAGGCTGCTCAACTCGGCCTTTCCGTCACT
TGCGTTGAGAAGCGCGGTACGCTAGGTGGCACATGTCTCAACGTTGGGTG
CATTCCAAGCAAAGCGCTTCTACACTCGTCTCATTTGTATGAGGAAGCCA
AGCACAGTTTTTCCAAGCATGGAATCGACATCAAGGGCGACGTGGAAGTT
AACCTTCCCGCCATGATGAAACACAAGCTCAACAGCGTCGGCGGCCTTAC
TCAAGGTATTGAAGGTCTCTTTAAGAAGAACAAAGTCACCTATGTTAAGG
GCGCCGGTTCAGTTTCCTCTGCGAATGAGGTCTCCGTTGACCTTATTGAT
GGCGGCTCTCAACAAATCGCGGCGAAGAATATCATGATTGCTACCGGAAG
CGAAGTTTCCACTCTACCAACAGTCCCCATCGACGAACAAGTCATAGTGT
CAAGTACCGGTGCGCTCAAACTTGAAACAGTGCCTGAGAAAATGGTCGTA
ATTGGAGGTGGCGTAATCGGTCTTGAAATGGGCTCTGTATGGAGAAGACT
TGGTGCTGATGTCACAGTAGTTGAATTCTTGGATCGCATCATACCTGGTA
CAGACAAAGAGATTGCAAATAACTTCCTTCGCATTCTCAAGAAACAGAAG
ATGAAGTTCAAGCTTGGAACAAAGGTTGTTTCGAGTAAGAAAGAGGGTGG
AAAGGTCGTACTCGATCTTGAAAAGAGCAAGGGTGGAAAGCCTGAAACCA
TGGAGGCTGATGTCGTTCTAGTGGCCACAGGTCGAAAACCACACACTGAT
GGACTGGGTTTGGATAAGGTTGGAATCGAAATGGACGATAGGGGAAGAAT
TAACGTCGACGACAAATTCCGCACAAATGTTCCGAACATCTATGCTATTG
GTGATGTTATCAAAGGTCCAATGCTGGCTCACAAGGCTGAAGACGAGGGT
CTAATCGCTGCCGAAATTATCGCAGGCGCTGGTGAAGGTCACCTCGATTA
CAATTGTGTTCCTAATGTTATCTACACTCATCCTGAAGTTGCCACAGTTG
GAAAGACGGAAGAGGAACTTAAAGAGGCTGGTGTAGAATACTCTAAAGGA
ACATTCCCCTTTATGGCGAACTCTCGAGCACGAACAAACGATGTTGGCGG
CGAGTTCGCTCAAGGTATGGTCAAGGTCCTTGCCGACAAGACCACAGATC
GTGTCCTTGGTATGCACATCGTTGGTCCTAATGCTGGCGAACTGATTGCT
GAAGGCGTTCTTGCCATGGAATACGGCGCGAGCTCCGAAGATATCGCTAG
GACATGCCACGCTCATCCCACTCTCTCAGAAGCCACAAGAGAAGCCGCTA
TGGCTACTCACAGCAAACCCATCCATTTCTAA
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protein sequence of Ggra1313.t1

>Ggra1313.t1 ID=Ggra1313.t1|Name=Ggra1313.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MLSFRTTAPRFHTLRRFLSTAPQQDLVVIGGGPGGYVAAIKAAQLGLSVT
CVEKRGTLGGTCLNVGCIPSKALLHSSHLYEEAKHSFSKHGIDIKGDVEV
NLPAMMKHKLNSVGGLTQGIEGLFKKNKVTYVKGAGSVSSANEVSVDLID
GGSQQIAAKNIMIATGSEVSTLPTVPIDEQVIVSSTGALKLETVPEKMVV
IGGGVIGLEMGSVWRRLGADVTVVEFLDRIIPGTDKEIANNFLRILKKQK
MKFKLGTKVVSSKKEGGKVVLDLEKSKGGKPETMEADVVLVATGRKPHTD
GLGLDKVGIEMDDRGRINVDDKFRTNVPNIYAIGDVIKGPMLAHKAEDEG
LIAAEIIAGAGEGHLDYNCVPNVIYTHPEVATVGKTEEELKEAGVEYSKG
TFPFMANSRARTNDVGGEFAQGMVKVLADKTTDRVLGMHIVGPNAGELIA
EGVLAMEYGASSEDIARTCHAHPTLSEATREAAMATHSKPIHF*
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mRNA from alignment at tig00000092_pilon:74710..76191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1313.t1 ID=Ggra1313.t1|Name=Ggra1313.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000092_pilon:74710..76191- (Gracilaria gracilis GNS1m male)
ATGCTGTCGTTTCGCACCACAGCTCCTCGCTTCCACACGCTGCGTCGCTT
CTTGTCCACCGCTCCTCAACAGGATCTTGTCGTTATTGGCGGCGGTCCCG
GTGGTTATGTAGCTGCTATCAAGGCTGCTCAACTCGGCCTTTCCGTCACT
TGCGTTGAGAAGCGCGGTACGCTAGGTGGCACATGTCTCAACGTTGGGTG
CATTCCAAGCAAAGCGCTTCTACACTCGTCTCATTTGTATGAGGAAGCCA
AGCACAGTTTTTCCAAGCATGGAATCGACATCAAGGGCGACGTGGAAGTT
AACCTTCCCGCCATGATGAAACACAAGCTCAACAGCGTCGGCGGCCTTAC
TCAAGGTATTGAAGGTCTCTTTAAGAAGAACAAAGTCACCTATGTTAAGG
GCGCCGGTTCAGTTTCCTCTGCGAATGAGGTCTCCGTTGACCTTATTGAT
GGCGGCTCTCAACAAATCGCGGCGAAGAATATCATGATTGCTACCGGAAG
CGAAGTTTCCACTCTACCAACAGTCCCCATCGACGAACAAGTCATAGTGT
CAAGTACCGGTGCGCTCAAACTTGAAACAGTGCCTGAGAAAATGGTCGTA
ATTGGAGGTGGCGTAATCGGTCTTGAAATGGGCTCTGTATGGAGAAGACT
TGGTGCTGATGTCACAGTAGTTGAATTCTTGGATCGCATCATACCTGGTA
CAGACAAAGAGATTGCAAATAACTTCCTTCGCATTCTCAAGAAACAGAAG
ATGAAGTTCAAGCTTGGAACAAAGGTTGTTTCGAGTAAGAAAGAGGGTGG
AAAGGTCGTACTCGATCTTGAAAAGAGCAAGGGTGGAAAGCCTGAAACCA
TGGAGGCTGATGTCGTTCTAGTGGCCACAGGTCGAAAACCACACACTGAT
GGACTGGGTTTGGATAAGGTTGGAATCGAAATGGACGATAGGGGAAGAAT
TAACGTCGACGACAAATTCCGCACAAATGTTCCGAACATCTATGCTATTG
GTGATGTTATCAAAGGTCCAATGCTGGCTCACAAGGCTGAAGACGAGGGT
CTAATCGCTGCCGAAATTATCGCAGGCGCTGGTGAAGGTCACCTCGATTA
CAATTGTGTTCCTAATGTTATCTACACTCATCCTGAAGTTGCCACAGTTG
GAAAGACGGAAGAGGAACTTAAAGAGGCTGGTGTAGAATACTCTAAAGGA
ACATTCCCCTTTATGGCGAACTCTCGAGCACGAACAAACGATGTTGGCGG
CGAGTTCGCTCAAGGTATGGTCAAGGTCCTTGCCGACAAGACCACAGATC
GTGTCCTTGGTATGCACATCGTTGGTCCTAATGCTGGCGAACTGATTGCT
GAAGGCGTTCTTGCCATGGAATACGGCGCGAGCTCCGAAGATATCGCTAG
GACATGCCACGCTCATCCCACTCTCTCAGAAGCCACAAGAGAAGCCGCTA
TGGCTACTCACAGCAAACCCATCCATTTCTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:74710..76191-

>Ggra1313.t1 ID=Ggra1313.t1|Name=Ggra1313.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000092_pilon:74710..76191- (Gracilaria gracilis GNS1m male)
ATGCTGTCGTTTCGCACCACAGCTCCTCGCTTCCACACGCTGCGTCGCTT
CTTGTCCACCGCTCCTCAACAGGATCTTGTCGTTATTGGCGGCGGTCCCG
GTGGTTATGTAGCTGCTATCAAGGCTGCTCAACTCGGCCTTTCCGTCACT
TGCGTTGAGAAGCGCGGTACGCTAGGTGGCACATGTCTCAACGTTGGGTG
CATTCCAAGCAAAGCGCTTCTACACTCGTCTCATTTGTATGAGGAAGCCA
AGCACAGTTTTTCCAAGCATGGAATCGACATCAAGGGCGACGTGGAAGTT
AACCTTCCCGCCATGATGAAACACAAGCTCAACAGCGTCGGCGGCCTTAC
TCAAGGTATTGAAGGTCTCTTTAAGAAGAACAAAGTCACCTATGTTAAGG
GCGCCGGTTCAGTTTCCTCTGCGAATGAGGTCTCCGTTGACCTTATTGAT
GGCGGCTCTCAACAAATCGCGGCGAAGAATATCATGATTGCTACCGGAAG
CGAAGTTTCCACTCTACCAACAGTCCCCATCGACGAACAAGTCATAGTGT
CAAGTACCGGTGCGCTCAAACTTGAAACAGTGCCTGAGAAAATGGTCGTA
ATTGGAGGTGGCGTAATCGGTCTTGAAATGGGCTCTGTATGGAGAAGACT
TGGTGCTGATGTCACAGTAGTTGAATTCTTGGATCGCATCATACCTGGTA
CAGACAAAGAGATTGCAAATAACTTCCTTCGCATTCTCAAGAAACAGAAG
ATGAAGTTCAAGCTTGGAACAAAGGTTGTTTCGAGTAAGAAAGAGGGTGG
AAAGGTCGTACTCGATCTTGAAAAGAGCAAGGGTGGAAAGCCTGAAACCA
TGGAGGCTGATGTCGTTCTAGTGGCCACAGGTCGAAAACCACACACTGAT
GGACTGGGTTTGGATAAGGTTGGAATCGAAATGGACGATAGGGGAAGAAT
TAACGTCGACGACAAATTCCGCACAAATGTTCCGAACATCTATGCTATTG
GTGATGTTATCAAAGGTCCAATGCTGGCTCACAAGGCTGAAGACGAGGGT
CTAATCGCTGCCGAAATTATCGCAGGCGCTGGTGAAGGTCACCTCGATTA
CAATTGTGTTCCTAATGTTATCTACACTCATCCTGAAGTTGCCACAGTTG
GAAAGACGGAAGAGGAACTTAAAGAGGCTGGTGTAGAATACTCTAAAGGA
ACATTCCCCTTTATGGCGAACTCTCGAGCACGAACAAACGATGTTGGCGG
CGAGTTCGCTCAAGGTATGGTCAAGGTCCTTGCCGACAAGACCACAGATC
GTGTCCTTGGTATGCACATCGTTGGTCCTAATGCTGGCGAACTGATTGCT
GAAGGCGTTCTTGCCATGGAATACGGCGCGAGCTCCGAAGATATCGCTAG
GACATGCCACGCTCATCCCACTCTCTCAGAAGCCACAAGAGAAGCCGCTA
TGGCTACTCACAGCAAACCCATCCATTTCTAA
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