Ggra1311.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1311.t1
Unique NameGgra1311.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:72005..73164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708750.1
PFAMsFDX-ACB,Phe_tRNA-synt_N,tRNA-synt_2d
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue1.58e-121
EggNOG OGsCOG0016@1|root,KOG2783@2759|Eukaryota
EC6.1.1.20
Descriptionphenylalanyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1311Ggra1311Gracilaria gracilis GNS1m malegenetig00000092_pilon 72005..73164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1311.t1Ggra1311.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 72005..73164 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1311.t1.start1Ggra1311.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 72005..72007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1311.t1.CDS1Ggra1311.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 72005..72394 +
Ggra1311.t1.CDS2Ggra1311.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 72469..73164 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1311.t1.exon1Ggra1311.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 72005..72394 +
Ggra1311.t1.exon2Ggra1311.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 72469..73164 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1311.t1.intron1Ggra1311.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 72395..72468 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1311.t1.stop1Ggra1311.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 73162..73164 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1311.t1 ID=Ggra1311.t1|Name=Ggra1311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MTQLSRSLASARSILRRYLATQPSRATENVDLRPTQGHGRVPEAIWRKTS
DRLHKKPLHPLCTLRTEIESYFQTRHPNVFHSYNDLSPVVTTKHCFDDLL
VPANHPSRAPTDTYYVDNDVVLRTHMTAHDDHYPVFHQIDATRLYEPGTD
RVQIQKDLQTSLTGLAHHLFGEQAKLRWVDAYFPFTYPSFELEVFWQGEW
LELLGCGLLHRGVLSNANVASDVDGWAFGLGLERLAMVLFQLPDIRLFWS
KDERVTSQFSSGTLLDRFEPFSVFPSIEKDISFWVDGQFHENDFCEIARS
LGGDLVENVSLVDRFEREGKSSLCYRLVFRSMERNLTHSEINDLFYNIRE
SVSSSLPVTLR*
back to top

spliced messenger RNA

>Ggra1311.t1 ID=Ggra1311.t1|Name=Ggra1311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000092_pilon:72005..73164+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAGTTGTCAAGGAGCCTTGCGTCAGCGAGATCAATTCTTCGAAG
ATACCTCGCAACGCAGCCATCGAGGGCTACCGAAAACGTTGACTTGAGGC
CCACACAAGGCCATGGACGCGTACCGGAGGCAATCTGGCGCAAGACATCC
GACAGGCTGCATAAAAAGCCCCTACATCCTCTTTGCACGCTACGCACGGA
GATCGAATCGTACTTTCAAACTCGACATCCAAACGTCTTCCATTCTTACA
ACGACTTATCTCCGGTAGTCACCACAAAGCATTGCTTCGATGACTTGCTC
GTTCCAGCCAACCATCCGTCTCGCGCCCCCACTGATACTTACTACGTCGA
TAACGACGTGGTGCTTCGAACTCATATGACTGCTCATGATGATCATTATC
CAGTGTTTCATCAGATCGATGCCACGCGCTTGTACGAGCCAGGTACCGAC
CGTGTCCAGATTCAGAAAGACTTGCAGACCAGTTTGACCGGCCTAGCTCA
TCATTTGTTTGGTGAACAGGCCAAACTTCGTTGGGTGGATGCGTACTTCC
CGTTTACATATCCTAGTTTTGAACTGGAGGTTTTCTGGCAAGGTGAATGG
CTTGAACTTCTTGGATGTGGCCTGTTACATCGCGGAGTTCTTTCTAATGC
TAATGTCGCCAGTGACGTCGATGGCTGGGCTTTTGGGCTGGGTTTGGAGA
GACTCGCCATGGTTCTGTTTCAGCTTCCTGATATCAGACTGTTCTGGTCA
AAGGACGAACGCGTGACGTCTCAGTTTTCAAGCGGAACTCTGTTGGACAG
GTTTGAACCCTTCTCTGTGTTTCCAAGCATTGAGAAGGACATTTCGTTTT
GGGTGGATGGCCAATTTCATGAGAATGATTTTTGCGAGATAGCTCGCAGT
CTGGGAGGTGATCTTGTTGAGAATGTTTCGCTGGTCGATCGTTTTGAACG
CGAGGGAAAATCGAGTCTTTGCTATCGCTTGGTGTTTAGAAGTATGGAAA
GAAACTTGACTCACTCGGAGATTAATGACTTGTTCTATAACATAAGGGAA
AGCGTTTCAAGCAGTCTGCCTGTGACCTTGAGATAA
back to top

protein sequence of Ggra1311.t1

>Ggra1311.t1 ID=Ggra1311.t1|Name=Ggra1311.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MTQLSRSLASARSILRRYLATQPSRATENVDLRPTQGHGRVPEAIWRKTS
DRLHKKPLHPLCTLRTEIESYFQTRHPNVFHSYNDLSPVVTTKHCFDDLL
VPANHPSRAPTDTYYVDNDVVLRTHMTAHDDHYPVFHQIDATRLYEPGTD
RVQIQKDLQTSLTGLAHHLFGEQAKLRWVDAYFPFTYPSFELEVFWQGEW
LELLGCGLLHRGVLSNANVASDVDGWAFGLGLERLAMVLFQLPDIRLFWS
KDERVTSQFSSGTLLDRFEPFSVFPSIEKDISFWVDGQFHENDFCEIARS
LGGDLVENVSLVDRFEREGKSSLCYRLVFRSMERNLTHSEINDLFYNIRE
SVSSSLPVTLR*
back to top

mRNA from alignment at tig00000092_pilon:72005..73164+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1311.t1 ID=Ggra1311.t1|Name=Ggra1311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1160bp|location=Sequence derived from alignment at tig00000092_pilon:72005..73164+ (Gracilaria gracilis GNS1m male)
ATGACTCAGTTGTCAAGGAGCCTTGCGTCAGCGAGATCAATTCTTCGAAG
ATACCTCGCAACGCAGCCATCGAGGGCTACCGAAAACGTTGACTTGAGGC
CCACACAAGGCCATGGACGCGTACCGGAGGCAATCTGGCGCAAGACATCC
GACAGGCTGCATAAAAAGCCCCTACATCCTCTTTGCACGCTACGCACGGA
GATCGAATCGTACTTTCAAACTCGACATCCAAACGTCTTCCATTCTTACA
ACGACTTATCTCCGGTAGTCACCACAAAGCATTGCTTCGATGACTTGCTC
GTTCCAGCCAACCATCCGTCTCGCGCCCCCACTGATACTTACTACGTCGA
TAACGACGTGGTGCTTCGAACTCATATGACTGCTCATGATGTACCCCTCA
TGCAGCAGGGCAAAACCGCCCTTTTTCTTTGCGGAGATGTGTACCGTCGT
GACACTATTGACAGGATCATTATCCAGTGTTTCATCAGATCGATGCCACG
CGCTTGTACGAGCCAGGTACCGACCGTGTCCAGATTCAGAAAGACTTGCA
GACCAGTTTGACCGGCCTAGCTCATCATTTGTTTGGTGAACAGGCCAAAC
TTCGTTGGGTGGATGCGTACTTCCCGTTTACATATCCTAGTTTTGAACTG
GAGGTTTTCTGGCAAGGTGAATGGCTTGAACTTCTTGGATGTGGCCTGTT
ACATCGCGGAGTTCTTTCTAATGCTAATGTCGCCAGTGACGTCGATGGCT
GGGCTTTTGGGCTGGGTTTGGAGAGACTCGCCATGGTTCTGTTTCAGCTT
CCTGATATCAGACTGTTCTGGTCAAAGGACGAACGCGTGACGTCTCAGTT
TTCAAGCGGAACTCTGTTGGACAGGTTTGAACCCTTCTCTGTGTTTCCAA
GCATTGAGAAGGACATTTCGTTTTGGGTGGATGGCCAATTTCATGAGAAT
GATTTTTGCGAGATAGCTCGCAGTCTGGGAGGTGATCTTGTTGAGAATGT
TTCGCTGGTCGATCGTTTTGAACGCGAGGGAAAATCGAGTCTTTGCTATC
GCTTGGTGTTTAGAAGTATGGAAAGAAACTTGACTCACTCGGAGATTAAT
GACTTGTTCTATAACATAAGGGAAAGCGTTTCAAGCAGTCTGCCTGTGAC
CTTGAGATAA
back to top

Coding sequence (CDS) from alignment at tig00000092_pilon:72005..73164+

>Ggra1311.t1 ID=Ggra1311.t1|Name=Ggra1311.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000092_pilon:72005..73164+ (Gracilaria gracilis GNS1m male)
ATGACTCAGTTGTCAAGGAGCCTTGCGTCAGCGAGATCAATTCTTCGAAG
ATACCTCGCAACGCAGCCATCGAGGGCTACCGAAAACGTTGACTTGAGGC
CCACACAAGGCCATGGACGCGTACCGGAGGCAATCTGGCGCAAGACATCC
GACAGGCTGCATAAAAAGCCCCTACATCCTCTTTGCACGCTACGCACGGA
GATCGAATCGTACTTTCAAACTCGACATCCAAACGTCTTCCATTCTTACA
ACGACTTATCTCCGGTAGTCACCACAAAGCATTGCTTCGATGACTTGCTC
GTTCCAGCCAACCATCCGTCTCGCGCCCCCACTGATACTTACTACGTCGA
TAACGACGTGGTGCTTCGAACTCATATGACTGCTCATGATGATCATTATC
CAGTGTTTCATCAGATCGATGCCACGCGCTTGTACGAGCCAGGTACCGAC
CGTGTCCAGATTCAGAAAGACTTGCAGACCAGTTTGACCGGCCTAGCTCA
TCATTTGTTTGGTGAACAGGCCAAACTTCGTTGGGTGGATGCGTACTTCC
CGTTTACATATCCTAGTTTTGAACTGGAGGTTTTCTGGCAAGGTGAATGG
CTTGAACTTCTTGGATGTGGCCTGTTACATCGCGGAGTTCTTTCTAATGC
TAATGTCGCCAGTGACGTCGATGGCTGGGCTTTTGGGCTGGGTTTGGAGA
GACTCGCCATGGTTCTGTTTCAGCTTCCTGATATCAGACTGTTCTGGTCA
AAGGACGAACGCGTGACGTCTCAGTTTTCAAGCGGAACTCTGTTGGACAG
GTTTGAACCCTTCTCTGTGTTTCCAAGCATTGAGAAGGACATTTCGTTTT
GGGTGGATGGCCAATTTCATGAGAATGATTTTTGCGAGATAGCTCGCAGT
CTGGGAGGTGATCTTGTTGAGAATGTTTCGCTGGTCGATCGTTTTGAACG
CGAGGGAAAATCGAGTCTTTGCTATCGCTTGGTGTTTAGAAGTATGGAAA
GAAACTTGACTCACTCGGAGATTAATGACTTGTTCTATAACATAAGGGAA
AGCGTTTCAAGCAGTCTGCCTGTGACCTTGAGATAA
back to top